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Spatial Computation on Spark Using GPGPU (GPGPU를 활용한 스파크 기반 공간 연산)

  • Son, Chanseung;Kim, Daehee;Park, Neungsoo
    • KIPS Transactions on Computer and Communication Systems
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    • v.5 no.8
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    • pp.181-188
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    • 2016
  • Recently, as the amount of spatial information increases, an interest in the study of spatial information processing has been increased. Spatial database systems extended from the traditional relational database systems are difficult to handle large data sets because of the scalability. SpatialHadoop extended from Hadoop system has a low performance, because spatial computations in SpationHadoop require a lot of write operations of intermediate results to the disk, resulting in the performance degradation. In this paper, Spatial Computation Spark(SC-Spark) is proposed, which is an in-memory based distributed processing framework. SC-Spark is extended from Spark in order to efficiently perform the spatial operation for large-scale data. In addition, SC-Spark based on the GPGPU is developed to improve the performance of the SC-Spark. SC-Spark uses the advantage of the Spark holding intermediate results in the memory. And GPGPU-based SC-Spark can perform spatial operations in parallel using a plurality of processing elements of an GPU. To verify the proposed work, experiments on a single AMD system were performed using SC-Spark and GPGPU-based SC-Spark for Point-in-Polygon and spatial join operation. The experimental results showed that the performance of SC-Spark and GPGPU-based SC-Spark were up-to 8 times faster than SpatialHadoop.

An Accelerated Approach to Dose Distribution Calculation in Inverse Treatment Planning for Brachytherapy (근접 치료에서 역방향 치료 계획의 선량분포 계산 가속화 방법)

  • Byungdu Jo
    • Journal of the Korean Society of Radiology
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    • v.17 no.5
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    • pp.633-640
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    • 2023
  • With the recent development of static and dynamic modulated brachytherapy methods in brachytherapy, which use radiation shielding to modulate the dose distribution to deliver the dose, the amount of parameters and data required for dose calculation in inverse treatment planning and treatment plan optimization algorithms suitable for new directional beam intensity modulated brachytherapy is increasing. Although intensity-modulated brachytherapy enables accurate dose delivery of radiation, the increased amount of parameters and data increases the elapsed time required for dose calculation. In this study, a GPU-based CUDA-accelerated dose calculation algorithm was constructed to reduce the increase in dose calculation elapsed time. The acceleration of the calculation process was achieved by parallelizing the calculation of the system matrix of the volume of interest and the dose calculation. The developed algorithms were all performed in the same computing environment with an Intel (3.7 GHz, 6-core) CPU and a single NVIDIA GTX 1080ti graphics card, and the dose calculation time was evaluated by measuring only the dose calculation time, excluding the additional time required for loading data from disk and preprocessing operations. The results showed that the accelerated algorithm reduced the dose calculation time by about 30 times compared to the CPU-only calculation. The accelerated dose calculation algorithm can be expected to speed up treatment planning when new treatment plans need to be created to account for daily variations in applicator movement, such as in adaptive radiotherapy, or when dose calculation needs to account for changing parameters, such as in dynamically modulated brachytherapy.