• Title/Summary/Keyword: 개인유전체

Search Result 54, Processing Time 0.024 seconds

Application of Transposable Elements as Molecular-marker for Cancer Diagnosis (암 진단 분자 마커로서 이동성 유전인자의 응용)

  • Kim, Hyemin;Gim, Jeong-An;Woo, Hyojeong;Hong, Jeonghyeon;Kim, Jinyeop;Kim, Heui-Soo
    • Journal of Life Science
    • /
    • v.27 no.10
    • /
    • pp.1215-1224
    • /
    • 2017
  • Until now, various oncogenic pathways were idenfied. The accumulation of DNA mutation induces genomic instability in the cell, and it makes cancer. The development of bioinformatics and genomics, to find the precise and reliable biomarker is available. This biomarker could be applied the early-dignosis, prediction and convalescence of cancer. Recently, Transposable elements (TEs) have been attracted as the regulator of genes, because they occupy a half of human genome, and the cause of various diseases. TEs induce DNA mutation, as well as the regulation of gene expression, that makes to cancer development. So, we confirmed the relationship between TEs and colon cancer, and provided the clue for colon cancer biomarker. First, we confirmed long interspersed nuclear element-1 (LINE-1), Alu, and long terminal repeats (LTRs) and their relationship to colon cancer. Because these elements have large composition and enormous effect to the human genome. Interestingly, colon cancer specific patterns were detected, such as the hypomethylation of LINE-1, LINE-1 insertion in the APC gene, hypo- or hypermethylation of Alu, and isoform derived from LTR insertion. Moreover, hypomethylation of LINE-1 in proto-oncogene is used as the biomarker of colon cancer metastasis, and MLH1 mutation induced by Alu is detected in familial or hereditary colon cancer. The genes, effected by TEs, were analyzed their expression patterns by in silico analysis. Then, we provided tissue- and gender-specific expression patterns. This information can provide reliable cancer biomarker, and apply to prediction and diagnosis of colon cancer.

DEVELOPMENTAL PSYCHOPHARMACOLOGY - DEVELOPMENTAL PHARMACOKINETICS, PHARMACODYNAMICS AND PHARMACOGENETICS - (발달학적 정신약물학 - 발달학적 약동학, 약역학 및 약물유전학 -)

  • Cho, Soo-Churl
    • Journal of the Korean Academy of Child and Adolescent Psychiatry
    • /
    • v.14 no.2
    • /
    • pp.157-173
    • /
    • 2003
  • The history of pediatric psychopharmacology is very short and the research on safety, efficacy and side effects is preliminary and long-term effect on growth and maturation is not well known yet. Clinical findings have shown that the responses to antidepressants, antipsychotics, CNS stimulants and steroids in children and adolescents might be different from adult populations. Based on these findings, this paper reviewed three issues, Firstly, in developmental pharmacokinetics. the author discussed the developmental factors affecting drug absorption, distribution, protein-binding, metabolism and excretion. Secondly, in developmental pharmacodynamics, developmental characteristics of dopamine, serotonin, norepinephrine receptors and their clinical implications were reviewed. Lastly, in pharamcogenetic part, the clinical utility of pharmacogenetics, pharmacokinetic aspects of pharmacogenetics, the pharmacodynamic aspects of pharmacogenetics, the association studies of dopamine-related alleles in neuropsychiatric disorders such as attention-deficit hyperactivity disorders or Tourette’s disorders, pharmacogenetic studies dopamine-related alleles and the pharmacogenetic studies of serotonin-related alleles. Based on these preliminary research, future pharmacogenetic applications in childhood and adolescent psychiatry were also discussed.

  • PDF

Development of Transgenic Crops and Research Projects for Biotechnology Application (유전자 전환작물 개발 연구 현황과 과제)

  • 정태영
    • Korean Journal of Plant Tissue Culture
    • /
    • v.28 no.5
    • /
    • pp.289-296
    • /
    • 2001
  • The main objective of this topic is to establish strategies and to plan biotechnology researches which are related to the agricultural improvements especially focusing on the crop breeding in Korea. From 1960's to 1980's government policy had been emphasized to develope high yielding cultivars for the self sufficient supply of the staple food crops. As a result, considerable increase of rice production has been made with accumulating technology and man's powers. Recently genetically modified crops harboring useful characteristics have been developed using biotechnology and released in the developed countries. National research institutes and private companies have been developed biotechnology researches to establish competitive capabilities, however they have not been successfully used in commercialization. Therefore it is necessary to promote the practical. application by connecting molecular technology with conventional breeding. Proposed research projects are; (1) basic researches including plant genome studies, (2) developing new cultivars through gene transformation, (3) screening and producing antioxidants, secondary metabolite substances and edible vaccines. To set a government policy, both domestic and international research trends were reviewed and possibility of success based on the economic view point were discussed. The intellectual property and preservation of environment play a key role to decide the research priority. It is also necessary for us to make one step system for the distribution of research resources such as microorganisms, genes cloned, plant seeds and research informations for promoting research activities.

  • PDF

LTCC를 이용한 밀리미터파 송수신기 설계 기술

  • Song Myeong-Seon;Byeon U-Jin;Kim Kwang-Seon;Kim Bong-Su;Eun Gi-Chan
    • The Proceeding of the Korean Institute of Electromagnetic Engineering and Science
    • /
    • v.16 no.4 s.56
    • /
    • pp.48-61
    • /
    • 2005
  • 과거 밀리미터파는 군사용이나 국간 중계와 같은 제한적인 고정 통신용으로 사용되어 왔다. 이러한 제한적인 활용의 원인은 표준의 부재로 인한 장비 호환성 부족, 전파의 직진성, 고가의 시스템 가격, 새로운 활용 분야 개척 미흡에 있다고 하겠다. 고정 통신 분야에서는 IEEE 802.16에서 표준화가 완료되고, 밀리미터파 차량 충돌 방지 레이다, 밀리미터파 WPAN 등 새로운 활용 분야가 개척됨에 따라 시스템의 가격이 밀리미터파 이용 활성화의 관건이 되고 있으며, 특히 소형화에 의한 개인용 기기에의 응용을 위한 연구가 활발히 진행되고 있다. 본 논문에서는 적층 구조의 유전체 기판을 사용하는 LTCC 기술을 밀리미터파대에 적용하여 밀리미터파 송수신 시스템을 저가격화, 소형화하는 기술의 개발 현황에 대해 기술하였다.

Design and Implementation of a Band Pass Filter of Personal Communication System for information facilities (정보 설비용 통신장치의 대역통과 필터의 설계 및 구현)

  • 이헌용;김영달;윤중락;강명식
    • The Proceedings of the Korean Institute of Illuminating and Electrical Installation Engineers
    • /
    • v.10 no.3
    • /
    • pp.47-54
    • /
    • 1996
  • In this paper, the band pass filter was designed and constructed for personal communication services of information facilities. For the band pass filter design, after dielectric resonator structures were analyzed. J-inverter design theory and its simulation method were studied. The parameters obtained from design theory were practically applied to filter construction. The simulation results are well agreed with the measured result of constructed filter after fine tunings.

  • PDF

Current Status and Outlook of pNFS and Its Implementation (pNFS 표준화 및 연구개발 동향)

  • Park, J.S.;Kim, S.Y.;Cha, M.H.;Kim, D.O.;Kim, Y.C.;Kim, H.Y.
    • Electronics and Telecommunications Trends
    • /
    • v.26 no.5
    • /
    • pp.55-65
    • /
    • 2011
  • 요즘 신산업으로 떠오르고 있는 개인 유전체 분석이나 차세대 시퀀싱 기술과 같은 고성능 컴퓨팅 응용들은 data-intensive한 작업들을 요구하며, 이러한 응용을 지원하기 위한 고성능 파일 시스템 기술에 대한 연구들이 다수 진행 중이다. 그러나 그 결과물들은 업체별로 보유한 고유 기술로서, 상호 호환성 등의 문제로 인해 표준화의 필요성이 제기되어 왔다. 현재 파일 시스템과 관련하여 거의 모든 IT 업체에서 사용하고 있는 실질적인 표준은 NFS(Network File System)이다. IETF(Internet Engineering Task Force)에서는 이러한 요구사항들을 반영하여 2010년에 NFSv4.1 표준을 공표하였고, 특히 I/O 성능을 향상시키기 위한 pNFS(parallel NFS)는 NFSv4.1의 핵심 기능으로서 다수업체들과 연구기관들에서 많은 관심을 받고 있다. 본 고에서는 pNFS 표준화 및 연구개발 동향과 관련된 이슈들에 대해 기술하고자 한다.

  • PDF

Parallel CNV detection algorithm based on Cloud Computing (클라우드 컴퓨팅 기반의 병렬 CNV 검출 알고리즘)

  • Hong, Sang-Kyoon;Lee, Jee-Hee;Lee, Un-Joo
    • Proceedings of the Korea Information Processing Society Conference
    • /
    • 2011.04a
    • /
    • pp.1264-1267
    • /
    • 2011
  • 시퀀싱 기술의 발달로 최근에는 비교적 저렴한 비용으로 개인의 유전체 시퀀싱 데이터를 산출할 수 있게 되었다. 하지만 이를 기반으로 하는 기존의 분석 방법은 매우 고가의 컴퓨팅 환경을 요구하기 때문에 분석을 위한 비용이 매우 높은 문제가 있다. 본 논문에서 클라우드 컴퓨팅 환경의 병렬 CNV 검출알고리즘을 제안한다. 제안하는 방법은 모양 기반의 CNV 검출 알고리즘인 CNV_shape을 MapReduce 기법으로 개발한 것으로 시퀀싱 데이터를 레퍼런스 서열에 매핑한 결과로부터 리드 커버리지 (read coverage)를 계산하여 커버리지가 감소하거나 증가하는 일정 길이 이상의 영역을 검출하는 방법이다. 클라우드 컴퓨팅 환경에 적용하고 노드의 밸런싱 유지를 위한 방법으로 파티셔닝 기법을 사용하였다. 또한 실 데이터를 이용한 실험을 통해 제안하는 방법의 효율적 데이터 처리를 보인다.

Nutritional Metabolomics (영양 대사체학)

  • Hong, Young-Shick
    • Journal of the Korean Society of Food Science and Nutrition
    • /
    • v.43 no.2
    • /
    • pp.179-186
    • /
    • 2014
  • Metabolomics is the study of changes in the metabolic status of an organism as a consequence of drug treatment, environmental influences, nutrition, lifestyle, genetic variations, toxic exposure, disease, stress, etc, through global or comprehensive identification and quantification of every single metabolite in a biological system. Since most chronic diseases have been demonstrated to be linked to nutrition, nutritional metabolomics has great potential for improving our understanding of the relationship between disease and nutritional status, nutrient, or diet intake by exploring the metabolic effects of a specific food challenge in a more global manner, and improving individual health. In particular, metabolite profiling of biofluids, such as blood, urine, or feces, together with multivariate statistical analysis provides an effective strategy for monitoring human metabolic responses to dietary interventions and lifestyle habits. Therefore, studies of nutritional metabolomics have recently been performed to investigate nutrition-related metabolic pathways and biomarkers, along with their interactions with several diseases, based on animal-, individual-, and population-based criteria with the goal of achieving personalized health care in the future. This article introduces analytical technologies and their application to determination of nutritional phenotypes and nutrition-related diseases in nutritional metabolomics.

Gas Chromatographic and Mass Spectrometric Determination of Alcohol Homologues in the Korean Folk Sojues (Distilled Liquor) (기체크로마토그래피 및 질량분석법에 의한 민속 소주중의 알코올 동족체 분석)

  • Lee, Dong Seon;Park, Hye Seong;Kim, Geon;Lee, Taek Su;No, Bong Su
    • Journal of the Korean Chemical Society
    • /
    • v.38 no.9
    • /
    • pp.640-652
    • /
    • 1994
  • This work is undertaken to determine alcohol homologues so-called fusel oil that may be present in the Korean folk sojues (distilled liquor) made from grains and to describe sample preparation and analytical method by GC-FID-MS. Solid phase extraction method for sample preparation by using porous styrene divinyl benzene polymer (Porapak Q) was compared with steam distillation and solvent extraction method. Retention behaviors of homologous series of alcohols were also studied. Log values of retention time, molecular weight, boiling point, and capacity factor of alcohols showed linear correlations to the carbon number of an alcohol, to the oven temperature, and to the dielectric constant. Components such as methyl alcohol, n-propyl alcohol, isobutyl alcohol, isopentyl alcohol, and phenethyl alcohol have been identified. The more amount of isopentyl alcohol than other alcohols are contained in the Korean folk sojues, while that of n-propyl alcohol are contained in Chinese kaoliangchiew. Degree of similarity or dissimilarity and classification of the individual samples were discussed using multivariate statistical analysis(principal components analysis) based on GC data.

  • PDF

Relationship between Alcohol Withdrawal Symptoms and Dopaminergic Gene Polymorphisms(DRD2, DAT, COMT) in Alcohol Dependence Patients (알코올 의존 환자의 금단 증상에 영향을 미치는 도파민계(DRD2, DAT, COMT) 유전자 다형성)

  • Choi, Tai Young;Kim, Ho-Nam;Han, Doug-Hyun;Min, Kyung-Jun;Lee, Young-Sik;Na, Chul
    • Korean Journal of Biological Psychiatry
    • /
    • v.13 no.3
    • /
    • pp.178-190
    • /
    • 2006
  • Objectives : We investigated the relationship of the alcohol withdrawal symptoms with genetic polymorphism among alcohol dependence patients. Method : The measuring instruments used in this study were the Clinical Institute Withdrawal Assessment for Alcohol(CIWA-Ar). We analyzed DRD2 TaqI A polymorphism, dopamine transporter(DAT 1) polymorphism, and catechol-O-methyltransferase(COMT) polymorphism in 108 male alcoholics and 76 healthy controls. Results : The major findings was as follows. No significant differences for genotype distribution or allele frequency were revealed comparing controls and alcoholic patients. DRD2 Taq I : The subscale score of auditory hallucination among CIWA-Ar scale in homozygote was significantly higher than in heterozygote(OR=1.34). The total score of CIWA-Ar scale in heterozygote was significantly higher than in homozygote. DAT1 : In the subject without DAT-9 gene allele, it was significantly higher of the subscale score of sweating, anxiety among CIWA-Ar scale than in the subject with DAT-9 gene allele. And The total score of CIWA-Ar scale in the subject without DAT-9 gene allele was significantly higher than in the subject with DAT-9 gene allele. COMT : The total score of CIWA-Ar scale in heterozygote was significantly higher than in homozygote. Conclusion : Our results suggest the relationship between specific genetic factors and the withdrawal symptoms of alcohol dependent patients. As the candidate gene of the severity of alcohol withdrawal syndrome, DRD2 Taq1 gene was recommended.

  • PDF