• Title/Summary/Keyword: 'biological and environmental' section

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Isolation of ten unrecorded yeasts from soil in Korea

  • Han, Joo Hyun;Oh, Hye Jin;Lee, Sang Eun;Kim, Myung Kyum
    • Journal of Species Research
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    • v.10 no.4
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    • pp.336-343
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    • 2021
  • In 2020, as a subset study to discover indigenous yeast species in Korea, a total of 22 yeast species were isolated from soil samples collected in Gwangju-si, Gyeonggi-do. Among them, 10 strains were unreported species. From the high 26S rRNA gene sequence similarity and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged independent and predefined yeast species. The 22 strains were assigned to the genera Dothiora (1 strain), Sarocladium (1 strain), Tetrapisispora (1 strain) and Torulaspora (2 strains) of the phylum Ascomycota; the genera Erythrobasidium (1 strain), Leucosporidium (4 strains), Ustilentyloma (2 strains), Fellozyma (1 strain), Sampaiozyma (2 strains), Filobasidium (1 strain), Solicoccozyma (2 strains) and Vishniacozyma (4 strains) of the phylum Basidiomycota. This is the first official report of the following species in Korea: Dothiora cannabinae (1 strain), Sarocladium strictum (1 strain), Fellozyma inositophila (1 strain), Filobasidium magnum (1 strain), Solicoccozyma phenolicus (1 strain), Solicoccozyma terreus(1 strain), Vishniacozyma tephrensis(1 strain) and Vishniacozyma victoriae (3 strains). Cell morphology, phenotypic features and biochemical features are described in the Species Description section.

A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria

  • Lim, Yeonjung;Joung, Yochan;Nam, Gi Gyun;Jahng, Kwang-Yeop;Kim, Seung-Bum;Joh, Ki-seong;Cha, Chang-Jun;Seong, Chi-Nam;Bae, Jin-Woo;Im, Wan-Taek;Cho, Jang-Cheon
    • Journal of Species Research
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    • v.5 no.2
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    • pp.241-253
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    • 2016
  • In 2014, as a subset study to discover indigenous prokaryotic species in Korea, a total of 33 bacterial strains assigned to the class Gammaproteobacteria were isolated from diverse environmental samples collected from soil, tidal flat, freshwater, seawater, oil-contaminated soil, and guts of animal. From the high 16S rRNA gene sequence similarity (>98.5%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to each independent and predefined bacterial species. There is no official report that these 33 species have been described in Korea; therefore, 1 strain of the Aeromonadales, 6 strains of the Alteromonadales, 3 strains of the Chromatiales, 5 strains of the Enterobacteriales, 4 strains of the Oceanospirillales, 11 strains of the Pseudomonadales, and 3 strains of the Xanthomonadales within the Gammaproteobacteria are described for unreported bacterial species in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, and isolation sources are also described in the species description section.

Analyses of Seasonal Water Quality Pollution for Side Planning (수변계획을 위한 계절별 수질오염 분석)

  • Lee, Yang-Kyoo;Han, Jung-Geun;Hong, Chang-Sun
    • Journal of Korean Society of Water and Wastewater
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    • v.20 no.3
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    • pp.347-355
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    • 2006
  • Anyang Stream including its main branch is the biggest branch stream of Han River in Korea. The geological and geomorphological characteristics were investigated to the affected area of Anyang Stream, in which rainfall characteristic was analyzed. The water quality surveyed that the analysis of water pollution used to biotic index and biological water pollution. The rainfall pattern in this area was like to that of typical Korea, but the rate of trigger and runoff during summer season(June~August) is more higher than mean of Korea. Before 2003, a dried stream is severe status, which was due to abundant runoff, but this status are improved. After 1997, water quality of stream is recovering status such as water pollution of stream steeply decreased. Especially after 2003, this trend is more quickly improved. Although, owing to the increasing of a T-N and SS at upstream wastewater were due to bad collection of industrial factories, livestock's and mans living, the water quality worsted at upstream. Water quality in total section of main stream was severely contaminated that water-quality limit is 5 with polysaprobic by water self-purification. That of main branch was 1~3limits with ${\alpha}$- and ${\beta}$-mesosaprobic in Anyang city area, But water quality in all area about another branch of Anyang stream except Anyang city area was almost under of 3 grades. Though trying of Anyang city for recover movement(completion of 2nd Sewage Treatment Plant and Water supply pipe system) on Anyang stream, water pollution states of upper branch in Anyang stream was not better than its of 2002 because it may be difference of control area on other cities.

Isolation of wild yeasts from soils collected in Pochoen-si, Korea and characterization of unrecorded yeasts

  • Maeng, Soohyun;Park, Yuna;Srinivasan, Sathiyaraj
    • Journal of Species Research
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    • v.9 no.3
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    • pp.204-209
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    • 2020
  • In 2019, as a subset study to discover indigenous yeast species in Korea, a total of 20 yeast species were isolated from soil samples collected in Pochoen-si. Among them, eight strains were unreported species. From the high 26S rRNA gene sequence similarity and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to independent and predefined yeast species. The 20 strains were assigned to the genera Aureobasidium (1 strain) and Meyerozyma (1 strain) of the phylum Ascomycota and Cystofilobasidium (2 strains), Filobasidium (1 strain), Naganishia (2 strains), Bullera (3 strains), Leucosporidium (9 strains) and Sampaiozyma (1 strain) of the phylum Basidiomycota. There is no official report of the following species in Korea: Leucosporidium creatinivorum (4 strains), Leucosporidium escuderoi(2 strains), Leucosporidium golubevii(1 strain) and Leucosporidium intermedium (2 strains). Basic biochemical characteristics, colony and cell morphology are also described in the species description section.

Analysis of Environmental Factors and Change of Vascular Plant Species along an Elevational Gradients in Baekdansa, Mt. Taebaeksan National Park (태백산국립공원 백단사코스의 고도별 관속식물상 변화와 환경요인 분석)

  • An, Ji-Hong;Park, Hwan-Joon;Lee, Sae-rom;Seo, In-Soon;Nam, Gi-Heum;Kim, Jung-Hyun
    • Korean Journal of Environment and Ecology
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    • v.33 no.4
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    • pp.378-401
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    • 2019
  • This study generated a list of plants in eight sections from the Baekdansa ticket office (874m) to Cheonjedan (1,560m) divided in the interval of 100m above sea level to examine the species diversity patterns and distribution changes of the vascular plants at different altitudes in Taebaeksan National Park. Four site surveys found a total of 385 taxa: 89 families, 240 genera, 345 species, 5 subspecies, 34 varieties, and 1 form. A result of analyzing the change of species diversity along elevational gradients showed that it decreased with increasing elevation and then increased from a certain section. A result of analyzing habitat affinity types showed that the proportion of forest species increased with increasing elevation. On the other hand, the ruderal species appeared at a high rate in the artificial interference section. A result of comparing the proportion of woody and herb plants showed that the woody plants gradually increased with elevation and rapidly decreased in the artificial interference section. On the other hand, the herb plants showed the opposite trend. A result of analyzing the change of distribution of species according to altitude with the DCA technique showed that the vascular plants were divided into three groups according to the elevation in order on the I axis with the boundaries at 900m and 1,300m above sea level. The arrangement of each stand from right to left along the altitude on the I axis with a significant correlation with warmth index (WI) confirmed that the temperature change along the altitude could affect the distribution of vascular plants, composition, and diversity. Therefore, the continuous monitoring is necessary to confirm ecological and environmental characteristics of vegetation, distribution ranges, changes of habitat. We expect that the results of this study will be used as the basic data for establishing the measurement measures related to the preservation of biodiversity and climate change.

A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria

  • Choi, Ahyoung;Bae, Jin-Woo;Cha, Chang-Jun;Chun, Jongsik;Im, Wan-Taek;Jahng, Kwang Yeop;Jeon, Che Ok;Joh, Kiseong;Kim, Seung Bum;Seong, Chi Nam;Yoon, Jung-Hoon;Cho, Jang-Cheon
    • Journal of Species Research
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    • v.4 no.2
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    • pp.109-126
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    • 2015
  • As a subset study to discover indigenous prokaryotic species in Korea, a total of 39 bacterial strains assigned to the classes Betaproteobacteria and Gammaproteobacteria were isolated from diverse environmental samples collected from soil, tidal flat, freshwater, seawater, seaweed, wetland, plant roots, guts of insects, and fermented foods. From the high 16S rRNA gene sequence similarity (>99.1%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to each independent and predefined bacterial species. There is no official report that these 39 species have been described in Korea; therefore 4 species of 4 genera in the order Burkholderiales and 1 species in the order Neisseriales within the class Betaproteobacteria, and 10 species of 6 genera in the order Alteromonadales, 11 species of 3 genera in the order Pseudomonadales, 4 species of 4 genera in the order Enterobacteriales, 2 species of 2 genera in the order Vibrionales, 1 species in the order Aeromonadales, 3 species of 3 genera in the order Oceanospirillales, 2 species of 2 genera in the order Xanthomonadales, and 1 species in the order Chromatiales within the Gammaproteobacteia are reported for proteobacterial species found in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

Historical Control Data for Developmental Toxicity Study in Sprague-Dawley Rats (Sprague-Dawley 랫드를 이용한 발생독성시험의 기초자료연구)

  • 김종춘;이상준;배진숙;박종일;김용범;정문구
    • Toxicological Research
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    • v.17 no.2
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    • pp.83-90
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    • 2001
  • The background control data were compiled from rat developmental toxicity studies con-ducted at Toxicology Research Center, KRICT during the 1993-1999 period. These data were assembled in order to provide background in formation for the maternal and fetal data collected in 13 developmental toxicity studies using Sprague-Dawley rats. A total of 325 mated females were used in these studies during the seven-year period and overall pregnancy rate of these females was 93.8%. The present background control data included body weights, food consumption, hematological values, and organ weights of pregnant females, caesarean section data, and fetal examination data. These data can be used not only as a historical database for the meaningful interpretation of data from reproductive and developmental toxicity studies, but also as a contribution to biological characterization oj Sprague-Dawley rats.

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Immunomodulatory Effects of Euglena gracilis Extracts (Euglena gracilis 추출물의 면역조절 및 생리활성 분석)

  • Yu, Sun Nyoung;Park, Bo Bae;Kim, Ji Won;Hwang, You Lim;Kim, Sang Hun;Kim, Sunah;Lee, Taeho;Ahn, Soon Cheol
    • Journal of Life Science
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    • v.31 no.2
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    • pp.183-191
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    • 2021
  • Euglena gracilis is a microalga of great biotechnological interest that can create high levels of bioactive compounds, such as tocopherol, paramylon, and folic acid. The objective of this study was to investigate the biological activities of extracts from E. gracilis, especially those focused on immunological activity. E. gracilis biomass was extracted with hot water (HWE) and the remaining pellet was continuously extracted with methanol (HWME). First, we examined the effect of two extracts from E. gracilis on the production of nitric oxide (NO) and the expression of pro-inflammation cytokines, including IL-1β, IL-6, and TNF-α in murine macrophage RAW 264.7 cells. HWE treatment dose-dependently increased the production of IL-1β and TNF-α. On the other hand, treatment with HWME significantly decreased the generation of NO and pro-inflammatory cytokines (IL-6 and TNF-α) in lipopolysaccharide (LPS)-stimulated macrophage cells. In addition, other biological activities of the extracts were further analyzed: α-glucosidase inhibition, protein tyrosine phosphatase (PTP1B) inhibition, tyrosinase inhibition, xanthine oxidase (XO) inhibition, and angiotensin-converting enzyme (ACE) inhibition. Analysis of these biological activities showed that HWE has more inhibitory effects than HWME against α-glucosidase, tyrosinase, and XO agents. However, the inhibition of PTP1B and ACE with HWME were higher than with HWE. Taken together, the results suggested that E. gracilis possesses various biological activities―especially immunological capabilities―through regulation of cytokine production. Therefore, E. gracilis extract may be potentially useful for food material with immune-regulating effects.

Description of 42 unrecorded bacterial species in Korea, belonging to the class Alphaproteobacteria

  • Liu, Qingmei;Kim, Seung-Bum;Yoon, Jung-Hoon;Joh, Kiseong;Seong, Chi-Nam;Jeon, Che-Ok;Kim, Wonyong;Kim, Myung Kyum;Im, Wan-Taek
    • Journal of Species Research
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    • v.8 no.4
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    • pp.351-364
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    • 2019
  • Here we describe indigenous prokaryotic species in Korea, a total of 42 bacterial strains affiliated to the class Alphaproteobacteria isolated from various environmental samples: fermented vinegar, sea water, beach sand, fresh water, salt flats, moss, algae, activated sludge, and soil. From the high 16S rRNA gene sequence similarity (>98.7%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to predefined bacterial species. There is no official report that these 42 species included in Alphaproteobacteria in Korea: 15 species of 6 genera in the order Rhodospirillales, 12 species of 10 genera in the order Rhizobiales, 10 species of 8 genera in the order Rhodobacterales, 4 species of 4 genera in the order Sphingomonadales and 1 species of 1 genus in the order Caulobacterales. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

Foodweb of Aquatic Ecosystem within the Tamjin River through the Determination of Carbon and Nitrogen Stable Isotope Ratios (탄소 및 질소 안정동위원소비를 이용한 탐진강 수생태계 먹이망 연구)

  • Gal, Jong-Ku;Kim, Min-Seob;Lee, Yeon-Jung;Seo, Jin-Won;Shin, Kyung-Hoon
    • Korean Journal of Ecology and Environment
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    • v.45 no.2
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    • pp.242-251
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    • 2012
  • To investigate foodweb of aquatic ecosystem in the Tamjin River, carbon and nitrogen stable isotopes ratios of aquatic organisms, as well as environmental indicators based on the water, were determined in this study. Various organisms such as fishes (Coreoperca kawamebari, Zacco platypus, Cobitis lutheri, and Pungtungia herzi) and periphyton (epilithon and epiphyte), and particulate- and coarse particulate organic matters (POM and CPOM) were collected in upper (Tamjin River, Yuchi Stream, and Omcheon Stream) and lower (TJ-1~TJ-5) reaches of Jangheung Dam. The nitrate concentration and ${\delta}^{15}N$ signature of POM and organisms (invertebrates and fish) were found to be more enriched toward the downstream section of the river. It was determined that allochthonous matter occurring from a tributary alters the chemical character of water, as well as the isotopic signature of organisms contained therein. Attached algae (ephilithon) were identified as a base component of the benthic foodchain further downstream.