• Title/Summary/Keyword: $sp^{3}$ carbon

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Cystocin, a Novel Antibiotic, Produced by Streptomyces sp. GCA0001: Production and Characterization of Cystocin

  • Sohng, Jae-Kyung;Lee, Hei-Chan;Liou, Kwang-Kyoung;Lee, Eui-Bok;Kang, Sun-Yub;Woo, Jin-Suk
    • Journal of Microbiology and Biotechnology
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    • v.13 no.4
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    • pp.483-486
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    • 2003
  • 3'-[S-Methyl-cysteinyl]-3'-amino-3'-deoxy-N,N- dimethyl adenosine, cystocin, is a biosynthesized antibiotic material newly identified from Streptomyces sp. GCA0001. Its structure was found to be similar to puromycin, where the terminal tyrosine is replaced by a methyl cysteine. NMR data prove that the 3-ammo ribose is connected to dimethylaminopurine through the anomeric carbon at 1'-carbon. The methyl cysteinyl unit is connected to the amino unit of ribose by peptide bond. The verification of the structure was performed by comparing the puromycin nucleosides resulted from the hydrolysis of cystocin and puromycin, respectively. Antibiotic activity of cystocin against Streptococcus was found to be two times more potent than that of puromycin.

Isolation and Characterization of Cyclohexanol-utilizing Bacteria (Cyclohexanol 이용성 세균의 분리 및 특성)

  • 김태강;이인구
    • Microbiology and Biotechnology Letters
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    • v.27 no.2
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    • pp.107-112
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    • 1999
  • A bacterium, which can utilize cyclohexanol as a sole source of carbon and energy, was isolated from sludge in sewage of Ulsan Industrial Complex for Petrochemicals, Korea and identified as Rhodococcus sp. TK6. The growth conditions of the bacteria were investigated in cyclohexanol containing media. The bacteria utilized cyclohexanol, cyclohexanone, cyclohexane-1,2=diol, cyclopentanol, cyclopentanone, and $\varepsilon$-caprolactone but not cyclohexane, cyclohexane-1,2-dione, and cyclooctanone. The bacteria were able to utilize alcohols such as ethanol, 1-propanol, 1-butanol, 1-pentanol, 1-hexanol, 2-methyl-1-propanol, 3-methyl-1-butanol, 2-propanol, and 2-butanol as well as cyclohexanol, organic acids such as adipate, propionate, butyrate, valerate, n-caproate, and 6-hydroxycaproate, and aromatic compounds such as phenol, salicylate, p-hydroxbenzoate, and benzoate as a sole source of carbon and energy. Cyclohexanone as a degradation product of cyclohexanol by Rhodococcus sp. TK6 was determined with gas chromatography.

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물리기상증착법으로 형성된 다이아몬드상 탄소 박막의 마찰 특성에 관한 연구

  • 박관우;문일도;나종주;김대은
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 2004.05a
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    • pp.141-141
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    • 2004
  • 다이아몬드상 탄소(diamond-like carbon, DLC) 박막은 명칭에 함축된 의미로 알 수 있듯이 다이아몬드와 유사한 특징을 지니고 있다. DLC 박막은 비정질(amorphous) 고상 탄소 박막으로 구조적으로 Sp$^1$, Sp$^2$, Sp$^3$의 결합들로 구성되어 있다. DLC 박막의 물성으로는 우수한 경도, 내마모성, 낮은 마찰계수, 화학적 안정성 그리고 적외선(IR) 영역에서의 높은 투과율 등이 있다. 현재 DLC 박막은 앞서 열거된 물성들의 장점을 활용하여 다양한 산업분야에서 활발히 응용되고 있다.(중략)

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Influence of Neutral Particle Beam Energy on the Structural Properties of Amorphous Carbon Films Prepared by Neutral Particle Beam Assisted Sputtering

  • Lee, Dong-Hyeok;Jang, Jin-Nyeong;Gwon, Gwang-Ho;Yu, Seok-Jae;Lee, Bong-Ju;Hong, Mun-Pyo
    • Proceedings of the Korean Vacuum Society Conference
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    • 2011.02a
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    • pp.194-194
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    • 2011
  • The effects of argon neutral beam (NB) energy on the amorphous carbon (a-C) films were investigated, while the a-C films were deposited by neutral particle beam assisted sputtering (NBAS) system. The energy of neutral particle beam can be controlled by reflector bias voltage directly as a unique operating parameter in this system. The deposition characteristics of the films investigated of Raman spectra, UV-visible spectroscopy, electrical conductivity, stress measurement system, and ellipsometer indicate the properties of amorphous carbon films can be manipulated by only NB energy (or reflector bias voltage) without changing any other process parameters. We report the effect of reflector bias voltage in the range from 0 to -1KV. By the increase of the reflector bias voltage, the amount of cross-linked sp2 clusters as well as the sp3 bonding in the a-C film coated by the NBAS system can be increased effectively and the composition of carbon thin films can be changed from nano-crystalline graphite phase to amorphous carbon phase.

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Novel Polyhydroxybutyrate-Degrading Activity of the Microbulbifer Genus as Confirmed by Microbulbifer sp. SOL03 from the Marine Environment

  • Park, Sol Lee;Cho, Jang Yeon;Kim, Su Hyun;Lee, Hong-Ju;Kim, Sang Hyun;Suh, Min Ju;Ham, Sion;Bhatia, Shashi Kant;Gurav, Ranjit;Park, ee-Hyoung;Park, Kyungmoon;Kim, Yun-Gon;Yang, Yung-Hun
    • Journal of Microbiology and Biotechnology
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    • v.32 no.1
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    • pp.27-36
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    • 2022
  • Ever since bioplastics were globally introduced to a wide range of industries, the disposal of used products made with bioplastics has become an issue inseparable from their application. Unlike petroleum-based plastics, bioplastics can be completely decomposed into water and carbon dioxide by microorganisms in a relatively short time, which is an advantage. However, there is little information on the specific degraders and accelerating factors for biodegradation. To elucidate a new strain for biodegrading poly-3-hydroxybutyrate (PHB), we screened out one PHB-degrading bacterium, Microbulbifer sp. SOL03, which is the first reported strain from the Microbulbifer genus to show PHB degradation activity, although Microbulbifer species are known to be complex carbohydrate degraders found in high-salt environments. In this study, we evaluated its biodegradability using solid- and liquid-based methods in addition to examining the changes in physical properties throughout the biodegradation process. Furthermore, we established the optimal conditions for biodegradation with respect to temperature, salt concentration, and additional carbon and nitrogen sources; accordingly, a temperature of 37℃ with the addition of 3% NaCl without additional carbon sources, was determined to be optimal. In summary, we found that Microbulbifer sp. SOL03 showed a PHB degradation yield of almost 97% after 10 days. To the best of our knowledge, this is the first study to investigate the potent bioplastic degradation activity of Microbulbifer sp., and we believe that it can contribute to the development of bioplastics from application to disposal.

Production of Extracellular Water Insoluble ${\beta}-1,3-Glucan$ (Curdlan) from Bacillus sp. SNC07

  • Gummadi, Sathyanarayana N.;Kumar, Kislay
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.10 no.6
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    • pp.546-551
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    • 2005
  • [ ${\beta}-1,3-Glucan$ ] (curdlan) is a water-insoluble polysaccharide composed exclusively of ${\beta}-1,3\;linked$ glucose residues. Extracellular curdlan was mostly synthesized by Agrobacterium species and Alcaligenes faecalis under nitrogen-limiting conditions. In this study, we screened the microorganisms capable of producing extracellular curdlan from soil samples. For the first time, we reported Gram-positive bacterium Bacillus sp. SNC 107 capable of producing extracellular curdlan in appreciable amounts. The effect of different carbon sources on curdlan production was studied and found that the yield of curdlan was more when glucose was used as carbon source. It was also found that maximum production was achieved when the initial concentration of ammonium and phosphate in the medium was 0.5 and 1.9 g/L respectively. In this study the curdlan production was increased from 3 to 7g/L in shake flask cultures.

Regulation of β-xylosidase biosynthesis in Paenibacillus sp. DG-22 (Paenibacillus sp. DG-22에서의 β-xylosidase 생합성 조절)

  • Lee, Tae-Hyeong;Lim, Pyung-Ok;Lee, Yong-Eok
    • Journal of Life Science
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    • v.17 no.3 s.83
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    • pp.407-411
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    • 2007
  • Regulation of ${\beta}-xylosidase$ synthesis in Paenibacillus sp. DC-22 was studied to optimize the enzyme production. ${\beta}-Xylosidase$ synthesis of the Paenibacillus sp. DG-22 was observed to be regulated by carbon sources present in culture media. The synthesis of ${\beta}-xylosidase$ was induced by xylan and methyl ${\beta}-D-xylopyranoside$ (${\beta}MeXyl$) but slightly repressed by readily metabolizable monosaccharides. ${\beta}MeXyl$ was found to be the best substrate for the induction of ${\beta}$-xylosidase and the most effective induction was obtained at a concentration of 10 mg/ml. ${\beta}-Xylosidase$ production showed a cell growth associated profile with the maximum amount formed during the late exponential phase of growth. The presence of glucose and xylose decreased the level of ${\beta}-xylosidase$ activity indicating that its production was subjected to a form of carbon catabolite repression. SDS-PAGE and zymogram techniques demonstrated the induction by ${\beta}MeXyl$ and revealed the presence of one ${\beta}-xylosidase$ of approximately 80 kDa.

Phosphorus Removal Characteristics by Bacteria Isolated from Industrial Wastewater (산업폐수로부터 분리한 인제거 미생물의 인 제거 특성)

  • Kim, Hee-Jung;Lee, Seok-Eon;Hong, Hyeon-Ki;Kim, Deok-Hyun;An, Jung-Woo;Choi, Jong-Soon;Nam, Ju-Hyun;Lee, Moon-Soon;Woo, Sun-Hee;Chung, Keun-Yook
    • Korean Journal of Environmental Agriculture
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    • v.31 no.2
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    • pp.185-191
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    • 2012
  • Background: The removal of phosphate(P) in the wastewater is essential for the prevention of eutrophication in the river and stream. This study was initiated to evaluate the P removal by three strains of bacteria isolated from industrial wastewater. The three strains of bacteria, A1, A2, and A3, isolated were identified as Stenotrophomonas maltophilia strain CUPS 3, Rhodococcus erythropolis strain Sco-C01, Bacillus sp. 3434BRRJ, respectively. METHODS AND RESULTS: The experiments evaluating the effects of temperature, P concentration, aeration, and carbon sources on P removal by Bacillus sp. 3434BRRJ were performed in the following conditions: temperature, 15, 25 and $30^{\circ}C$; P concentrations, 20, 30, and 40 mg/L; oxygen condition, aerobic, anaerobic/aerobic conditions; carbon sources, glucose, acetate and mixture of glucose and acetate. As a result, the best optimum conditions for P removal by Bacillus sp. 3434BRRJ were as follows: temperature, $30^{\circ}C$; P concentration, 20 mg/L; carbon sources, mixture of glucose and acetate; oxygen concentration, anaerobic and aerobic conditions. The P removal efficiencies by Bacillus sp. 3434BRRJ, Stenotrophomonas maltophilia strain CUPS, and Rhodococcus erythropolis strain Sco-C01 were 99%, 50%, 20%, respectively. CONCLUSION: As a result, the best optimum conditions for P removal by Bacillus sp. 3434BRRJ selected and used in this study were as follows: temperature, $30^{\circ}C$; P concentration, 20 mg/L; carbon sources, mixture of glucose and acetate; oxygen concentration, anaerobic and aerobic conditions.

Characterization of Crude Oil Degradation by Klebsiella sp. KCL-2 Isolated from Sea Water (유류오염 지역에서 분리된 Klebsiella sp. KCL-2에 의한 원유분해 특성)

  • 차재영;김혜선;조영수;이영춘;최용락
    • Journal of Life Science
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    • v.10 no.3
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    • pp.300-306
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    • 2000
  • Several bacterial strains utilizing crude oil as their sole carbon and energy source were isolated from polluted marine by crude oil. One of the strains, named KCL-2 showed strong degradation activity for crude oil. This strain was identified as a Klebsiella sp. based on the morphological, biochemical, and physiological characteristics. The optimum cultural conditions were as follows; $27^{\circ}C$~$37^{\circ}C$ for temperature and 7.0 for initial pH. Additionally, the optimal concentration of sodium chloride was 3.0%, confirming indicating that this strain was derived from sea water.The strain KCL-2 could use several kinds of n-alkane hydrocarbones from octadecane to octacosane as a sole carbon source. The emulsifying activity by KCL-2 was the highest after 3 days of cultivation under the condition of 3.0% sodium chloride, pH 7.0 and 32$^{\circ}C$. This strain had several criptic plasmids.

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Isotopic Evidence of Marine Yeast to Artificial Culture of Moina macrocopa (물벼룩(Moina macrocopa)배양을 위한 해양효모의 유효성에 대한 안전 동위원소의 증거)

  • Kim Mu-Chan;Kang Chang-Keun;Park Hye-Young;Lee Dae-Seong;Kim Yun-Sook;Lee Won-Jae
    • Korean Journal of Microbiology
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    • v.42 no.2
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    • pp.111-115
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    • 2006
  • A feeding trial was conducted to test the use of marine yeasts isolated from seawaters and sediments as a dietary source in cultivating a Cladocera, Moina macrocopa which is available as an alternative live food for fish larvae. The marine yeast-fed M. macrocopa had similar essential amino acid profiles to the documented values for Rotifers and Artemia enriched in microalgae and commercial diets. Erythrobacter sp. $S{\pi}-1$ lacked ${\omega}-3$ high unsaturated fatty acids (HUFAs), $20:5{\omega}-3$ (EPA) and $22:6{\omega}-3$ (DHA), which were also poor but detected in both the marine yeasts. An increase in the $20:5{\omega}-3$ and $22:6{\omega}-3$ levels, compared with the levels in marine yeast strains themselves, was more pronounced in the $22:6{\omega}-3$ level of Moina fed the Candida sp. Y-16, resulting in a high DHA:EPA ratio. When the Moina diets were switched, their ${\delta}^{13}C$ values shifted gradually toward the values of the switched diets. Diet switch from Erythrobacter sp. $S{\pi}-1$to Candide sp. Y.16 resulted in a more rapid turnover of Moina tissue carbon than that in the inverse case. When fed a mixed diet, the ${\delta}^{13}C$ values of Moina tissue approached the value of marine yeasts immediately. These temporal changes in the ${\delta}^{13}C$ values of Moina tissue indicate the preferential ingestion of marine yeasts and a selective assimilation of the carbon originated from marine yeasts. These findings suggest that marine yeasts, particularly Candida sp. Y-16, are highly available to mass cultures of M. macrocopa, providing better nutritional and dietaty values than the commercial diet (Erythrobacter sp. $S{\pi}-1$).