Acknowledgement
This work was supported by the Gyeongsang National University Fund for Professors on Sabbatical Leave, 2024.
References
- de Vos WM, Tilg H, Van Hul M, et al. Gut microbiome and health: mechanistic insights. Gut 2022;71:1020–1032. https://doi.org/10.1136/gutjnl-2021-326789
- Xu H, Cao C, Ren Y, et al. Antitumor effects of fecal microbiota transplantation: implications for microbiome modulation in cancer treatment. Front Immunol 2022;13:949490. https://doi.org/10.3389/fimmu.2022.949490
- Cani PD. Human gut microbiome: hopes, threats and promises. Gut 2018;67:1716–1725. https://doi.org/10.1136/gutjnl-2018-316723
- Hollister EB, Gao C, Versalovic J. Compositional and functional features of the gastrointestinal microbiome and their effects on human health. Gastroenterology 2014;146:1449–1458. https://doi.org/10.1053/j.gastro.2014.01.052
- Jalanka-Tuovinen J, Salojärvi J, Salonen A, et al. Faecal microbiota composition and host-microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome. Gut 2014;63:1737–1745. https://doi.org/10.1136/gutjnl-2013-305994
- Pittayanon R, Lau JT, Yuan Y, et al. Gut microbiota in patients with irritable bowel syndrome: a systematic review. Gastroenterology 2019;157:97–108. https://doi.org/10.1053/j.gastro.2019.03.049
- Lucas C, Barnich N, Nguyen HT. Microbiota, inflammation and colorectal cancer. Int J Mol Sci 2017;18:1310. https://doi.org/10.3390/ijms18061310
- Sánchez-Alcoholado L, Ramos-Molina B, Otero A, et al. The role of the gut microbiome in colorectal cancer development and therapy response. Cancers (Basel) 2020;12:1406. https://doi.org/10.3390/cancers12061406
- Lloyd-Price J, Arze C, Ananthakrishnan AN, et al. Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. Nature 2019;569:655–662. https://doi.org/10.1038/s41586-019-1237-9
- Depommier C, Everard A, Druart C, et al. Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study. Nat Med 2019;25:1096–1103. https://doi.org/10.1038/s41591-019-0495-2
- Qin J, Li Y, Cai Z, et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012;490:55–60. https://doi.org/10.1038/nature11450
- Wu H, Tremaroli V, Schmidt C, et al. The gut microbiota in prediabetes and diabetes: a population-based cross-sectional study. Cell Metab 2020;32:379–390. https://doi.org/10.1016/j.cmet.2020.06.011
- Fan Y, Pedersen O. Gut microbiota in human metabolic health and disease. Nat Rev Microbiol 2021;19:55–71. https://doi.org/10.1038/s41579-020-0433-9
- Mylonaki M, Langmead L, Pantes A, et al. Enteric infection in relapse of inflammatory bowel disease: importance of microbiological examination of stool. Eur J Gastroenterol Hepatol 2004;16:775–778. https://doi.org/10.1097/01.meg.0000131040.38607.09
- Mukherjee PK, Sendid B, Hoarau G, et al. Mycobiota in gastrointestinal diseases. Nat Rev Gastroenterol Hepatol 2015;12:77–87. https://doi.org/10.1038/nrgastro.2014.188
- Rautava S, Luoto R, Salminen S, et al. Microbial contact during pregnancy, intestinal colonization and human disease. Nat Rev Gastroenterol Hepatol 2012;9:565–576. https://doi.org/10.1038/nrgastro.2012.144
- Smits LP, Bouter KE, de Vos WM, et al. Therapeutic potential of fecal microbiota transplantation. Gastroenterology 2013;145:946–953. https://doi.org/10.1053/j.gastro.2013.08.058
- Peery AF, Kelly CR, Kao D, et al. AGA clinical practice guideline on fecal microbiota-based therapies for select gastrointestinal diseases. Gastroenterology 2024;166:409–434. https://doi.org/10.1053/j.gastro.2024.01.008
- Feuerstadt P, Louie TJ, Lashner B, et al. SER-109, an oral microbiome therapy for recurrent Clostridioides difficile infection. N Engl J Med 2022;386:220–229. https://doi.org/10.1056/NEJMoa2106516
- Khanna S, Assi M, Lee C, et al. Efficacy and safety of RBX2660 in PUNCH CD3, a phase III, randomized, double-blind, placebo-controlled trial with a Bayesian primary analysis for the prevention of recurrent Clostridioides difficile infection. Drugs 2022;82:1527–1538. https://doi.org/10.1007/s40265-022-01797-x
- Lopetuso LR, Deleu S, Godny L, et al. The first international Rome consensus conference on gut microbiota and faecal microbiota transplantation in inflammatory bowel disease. Gut 2023;72:1642–1650. https://doi.org/10.1136/gutjnl-2023-329948
- Cammarota G, Ianiro G, Tilg H, et al. European consensus conference on faecal microbiota transplantation in clinical practice. Gut 2017;66:569–580. https://doi.org/10.1136/gutjnl-2016-313017
- Gweon TG, Lee YJ, Kim KO, et al. Clinical practice guidelines for fecal microbiota transplantation in Korea. J Neurogastroenterol Motil 2022;28:28–42. https://doi.org/10.5056/jnm21221
- Vindigni SM, Surawicz CM. Fecal microbiota transplantation. Gastroenterol Clin North Am 2017;46:171–185. https://doi.org/10.1016/j.gtc.2016.09.012
- DeFilipp Z, Bloom PP, Torres Soto M, et al. Drug-resistant E. coli bacteremia transmitted by fecal microbiota transplant. N Engl J Med 2019;381:2043–2050. https://doi.org/10.1056/NEJMoa1910437
- Bafeta A, Yavchitz A, Riveros C, et al. Methods and reporting studies assessing fecal microbiota transplantation: a systematic review. Ann Intern Med 2017;167:34–39. https://doi.org/10.7326/M16-2810
- Woodworth MH, Carpentieri C, Sitchenko KL, et al. Challenges in fecal donor selection and screening for fecal microbiota transplantation: a review. Gut Microbes 2017;8:225-237. https://doi.org/10.1080/19490976.2017.1286006
- Cammarota G, Ianiro G, Kelly CR, et al. International consensus conference on stool banking for faecal microbiota transplantation in clinical practice. Gut 2019;68:2111-2121. https://doi.org/10.1136/gutjnl-2019-319548
- Cammarota G, Masucci L, Ianiro G, et al. Randomised clinical trial: faecal microbiota transplantation by colonoscopy vs. vancomycin for the treatment of recurrent Clostridium difficile infection. Aliment Pharmacol Ther 2015;41:835-843. https://doi.org/10.1111/apt.13144
- Kao D, Roach B, Silva M, et al. Effect of oral capsule- vs colonoscopy-delivered fecal microbiota transplantation on recurrent Clostridium difficile infection: a randomized clinical trial. JAMA 2017;318:1985-1993. https://doi.org/10.1001/jama.2017.17077
- van Nood E, Vrieze A, Nieuwdorp M, et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. N Engl J Med 2013;368:407-415. https://doi.org/10.1056/NEJMoa1205037
- Orenstein R, Dubberke E, Hardi R, et al. Safety and durability of RBX 2660 (microbiota suspension) for recurrent Clostridium dif-ficile infection: results of the PUNCHCD Study. Clin Infect Dis 2016;62:596-602. https://doi.org/10.1093/cid/civ938
- Bakken JS, Borody T, Brandt LJ, et al. Treating Clostridium difficile infection with fecal microbiota transplantation. Clin Gastroenterol Hepatol 2011;9:1044-1049. https://doi.org/10.1016/j.cgh.2011.08.014
- Mullish BH, Quraishi MN, Segal JP, et al. The use of faecal microbiota transplant as treatment for recurrent or refractory Clostridium difficile infection and other potential indications: joint British Society of Gastroenterology (BSG) and Healthcare Infection Society (HIS) guidelines. Gut 2018;67:1920-1941. https://doi.org/10.1136/gutjnl-2018-316818
- Monday L, Tillotson G, Chopra T. Microbiota-based live biotherapeutic products for Clostridioides difficile infection: the devil is in the details. Infect Drug Resist 2024;17:623-639. https://doi.org/10.2147/IDR.S419243
- Surawicz CM, Brandt LJ, Binion DG, et al. Guidelines for diagnosis, treatment, and prevention of Clostridium difficile infections. Am J Gastroenterol 2013;108:478-498. https://doi.org/10.1038/ajg.2013.4
- van Beurden YH, de Groot PF, van Nood E, et al. Complications, effectiveness, and longterm follow-up of fecal microbiota transfer by nasoduodenal tube for treatment of recurrent Clostridium difficile infection. United European Gastroenterol J 2017;5:868-879. https://doi.org/10.1177/2050640616678099
- Fischer M, Kao D, Mehta SR, et al. Predictors of early failure after fecal microbiota transplantation for the therapy of Clostridium difficile infection: a multicenter study. Am J Gastroenterol 2016;111:1024-1031. https://doi.org/10.1038/ajg.2016.180
- Perler BK, Chen B, Phelps E, et al. Long-term efficacy and safety of fecal microbiota transplantation for treatment of recurrent Clostridioides difficile infection. J Clin Gastroenterol 2020;54:701-706. https://doi.org/10.1097/MCG.0000000000001281
- Miller BA, Chen LF, Sexton DI, et al. Comparison of the burdens of hospital-onset, healthcare facility-associated Clostridium difficile infection and of healthcare-associated infection due to methicillin-resistant Staphylococcus aureus in community hospitals. Infect Control Hosp Epidemiol 2011;32:387-390. https://doi.org/10.1086/659156
- Vendrik KE, Terveer EM, Kuijper EJ, et al. Periodic screening of donor faeces with a quarantine period to prevent transmission of multidrug-resistant organisms during faecal microbiota transplantation: a retrospective cohort study. Lancet Infect Dis 2021;21:711-721. https://doi.org/10.1016/S1473-3099(20)30473-4
- Gerding DN, Muto CA, Owens RC Jr. Treatment of Clostridium difficile infection. Clin Infect Dis 2008;46 Suppl 1:932-S42. https://doi.org/10.1086/521860
- Barbut F, Richard A, Hamadi K, et al. Epidemiology of recurrences or reinfections of Clostridium difficile-associated diarrhea. J Clin Microbiol 2000;38:2386-2388. https://doi.org/10.1128/JCM.38.6.2386-2388.2000
- Brandt LJ, Aroniadis OC, Mellow M, et al. Long-term follow-up of colonoscopic fecal microbiota transplant for recurrent Clostridium difficile infection. Am J Gastroenterol 2012;107:1079-1087. https://doi.org/10.1038/ajg.2012.60
- Mattila E, Uusitalo-Seppälä R, Wuorela M, et al. Fecal transplantation, through colonoscopy, is effective therapy for recurrent Clostridium difficile infection. Gastroenterology 2012;142:490-496. https://doi.org/10.1053/j.gastro.2011.11.037
- Shin JY, Ko EJ, Lee SH, et al. Refractory pseudomembranous colitis that was treated successfully with colonoscopic fecal microbial transplantation. Intest Res 2016;14:83-88. https://doi.org/10.5217/ir.2016.14.1.83
- Jang MO, An JH, Jung SI, et al. Refractory Clostridium difficile infection cured with fecal microbiota transplantation in vancomycin-resistant enterococcus colonized patient. Intest Res 2015;13:80-84. https://doi.org/10.5217/ir.2015.13.1.80
- Khoruts A, Dicksved J, Jansson JK, et al. Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea. J Clin Gastroenterol 2010;44:354-360. https://doi.org/10.1097/MCG.0b013e3181c87e02
- Sokol H, Landman C, Seksik P, et al. Fecal microbiota transplantation to maintain remission in Crohn's disease: a pilot randomized controlled study. Microbiome 2020;8:12. https://doi.org/10.1186/s40168-020-0792-5
- Kassam Z, Lee CH, Yuan Y, et al. Fecal microbiota transplantation for Clostridium difficile infection: systematic review and meta-analysis. Am J Gastroenterol 2013;108:500-508. https://doi.org/10.1038/ajg.2013.59
- Quraishi MN, Widlak M, Bhala N, et al. Systematic review with meta-analysis: the efficacy of faecal microbiota transplantation for the treatment of recurrent and refractory Clostridium difficile infection. Aliment Pharmacol Ther 2017;46:479-493. https://doi.org/10.1111/apt.14201
- De Cruz P, Prideaux L, Wagner J, et al. Characterization of the gastrointestinal microbiota in health and inflammatory bowel disease. Inflamm Bowel Dis 2012;18:372-390. https://doi.org/10.1002/ibd.21751
- Lamb CA, Kennedy NA, Raine T, et al. British Society of Gastroenterology consensus guidelines on the management of inflammatory bowel disease in adults. Gut 2019;68(Suppl 3):s1-s106. https://doi.org/10.1136/gutjnl-2019-318484
- Moayyedi P, Surette MG, Kim PT, et al. Fecal microbiota transplantation induces remission in patients with active ulcerative colitis in a randomized controlled trial. Gastroenterology 2015;149:102-109. https://doi.org/10.1053/j.gastro.2015.04.001
- Costello SP, Conlon MA, Andrews JM. Fecal microbiota transplantation for ulcerative colitis-reply. JAMA 2019;321:2240-2241. https://doi.org/10.1001/jama.2019.3950
- Khanna S, Vazquez-Baeza Y, González A, et al. Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease. Microbiome 2017;5:55. https://doi.org/10.1186/s40168-017-0269-3
- Turnbaugh PJ, Ley RE, Mahowald MA, et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006;444:1027-1031. https://doi.org/10.1038/nature05414
- Qiu B, Liang J, Li C. Effects of fecal microbiota transplantation in metabolic syndrome: a meta-analysis of randomized controlled trials. PLoS One 2023;18:e0288718. https://doi.org/10.1371/journal.pone.0288718
- Sperber AD, Bangdiwala SI, Drossman DA, et al. Worldwide prevalence and burden of functional gastrointestinal disorders, results of Rome Foundation Global Study. Gastroenterology 2021;160:99-114. https://doi.org/10.1053/j.gastro.2020.04.014
- Ghoshal UC. Gut microbiota-brain axis modulation by a healthier microbiological microenvironment: facts and fictions. J Neurogastroenterol Motil 2018;24:4-6. https://doi.org/10.5056/jnm17150
- Black CJ, Drossman DA, Talley NJ, et al. Functional gastrointestinal disorders: advances in understanding and management. Lancet 2020;396:1664-1674. https://doi.org/10.1016/S0140-6736(20)32115-2
- Barbara G, Feinle-Bisset C, Ghoshal UC, et al. The intestinal microenvironment and functional gastrointestinal disorders. Gastroenterology 2016;150:P1305-P1318. https://doi.org/10.1053/j.gastro.2016.02.028
- Park SY, Seo GS. Fecal microbiota transplantation: is it safe? Clin Endosc 2021;54:157-160. https://doi.org/10.5946/ce.2021.072
- Kelly CR, Yen EF, Grinspan AM, et al. Fecal microbiota transplantation is highly effective in real-world practice: initial results from the FMT National Registry. Gastroenterology 2021;160:183-192. https://doi.org/10.1053/j.gastro.2020.09.038
- Smillie CS, Sauk J, Gevers D, et al. Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation. Cell Host Microbe 2018;23:229-240. https://doi.org/10.1016/j.chom.2018.01.003
- Paramsothy S, Kamm MA, Kaakoush NO, et al. Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial. Lancet 2017;389:1218-1228. https://doi.org/10.1016/S0140-6736(17)30182-4
- Carlson TJ, Gonzales-Luna AJ, Garey KW. Fulminant Clostridioides difficile infection: a review of treatment options for a life-threatening infection. Semin Respir Crit Care Med 2022;43:28-38. https://doi.org/10.1055/s-0041-1740973
- Louie T, Golan Y, Khanna S, et al. VE303, a defined bacterial consortium, for prevention of recurrent Clostridioides difficile infection: a randomized clinical trial. JAMA 2023;329:1356-1366. https://doi.org/10.1001/jama.2023.4314