Microbiology and Biotechnology Letters (한국미생물·생명공학회지)

The Korean Society for Microbiology and Biotechnology (한국미생물·생명공학회)
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Complete Genome Sequence of Spirosoma sp. SC4-14 Isolated from the Rhizosphere of pepper (Capsicum annuum L.)

  • Jihye Jung (Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAAS), Rural Development Administration (RDA)) ;
  • Dawon Jo (Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAAS), Rural Development Administration (RDA)) ;
  • Myoungjoo Riu (Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAAS), Rural Development Administration (RDA)) ;
  • Seongho Ahn (Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAAS), Rural Development Administration (RDA)) ;
  • Do-Hyun Kim (Agricultural Microbiology Division, National Institute of Agricultural Sciences (NAAS), Rural Development Administration (RDA))
  • Received : 2024.03.19
  • Accepted : 2024.04.26
  • Published : 2024.06.28
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Abstract

Spirosoma sp. SC4-14 was isolated from the rhizosphere soil of pepper (Capsicum annuum L.). The genome of the strain SC4-14 consists of a single chromosome with one plasmid, total size of 8,104,799 bp and the DNA G+C-content is 48.2%. This chromosome contains 6,479 protein-coding sequences and 41 tRNA and 6 rRNA genes.

Keywords

Acknowledgement

This research was supported by grants from the Agenda Project (Project No. PJ01727502) of the Rural Development Administration (RDA), Republic of Korea.

References

  1. Ten LN, Okiria J, Lee J-J, Lee S-Y, Park S, Lee DS, et al. 2018. Spirosoma terrae sp. nov., Isolated from Soil from Jeju Island, Korea. Curr. Microbiol. 75: 492-498. 
  2. Lee JJ, Elderiny N, Lee SY, Lee DS, Kim MK, Ten LN, et al. 2017. Spirosoma gilvum sp. nov., Isolated from Beach Soil. Curr. Microbiol. 74: 1425-1431. 
  3. Maeng S, Park Y, Han JH, Lee SE, Zhang J, Kim M-K, et al. 2020. Spirosoma aureum sp. nov., and Hymenobacter russus sp. nov., radiation-resistant bacteria in Cytophagales order isolated from soil. Antonie van Leeuwenhoek. 113: 2201-2212. 
  4. Joo ES, Lee J-J, Cha S, Jheong W, Seo T, Lim S, et al. 2015. Spirosoma pulveris sp. nov., a bacterium isolated from a dust sample collected at Chungnam province, South Korea. J. Microbiol. 53: 750-755. 
  5. Zhang L, Zhou X-Y, Su X-J, Hu Q, Jiang J-D. 2019. Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil. Antonie van Leeuwenhoek. 112: 1523-1532. 
  6. Kim MK, Kim J-Y, Kim SJ, Kim MJ, Lee JY, Kim C-G, et al. 2017. Complete genome sequence of Spirosoma pulveris JSH 5-14T, a bacterium isolated from a dust sample. Mol. Cell. Toxicol. 13: 373-378. 
  7. Lee JJ, Kang MS, Joo ES, Kim MK, Im WT, Jung HY, et al. 2015. Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil. J. Microbiol. 53: 429-434. 
  8. Kim D-U, Kim J-Y, Kim SJ, Kim MJ, Lee JY, Kim MK. 2017. Complete genome sequence of Spirosoma aerolatum KACC 17939 T, a bacterium related to the DNA repair. Korean J. Microbiol. 53: 230-232. 
  9. Rojas J, Ambika Manirajan B, Ratering S, Suarez C, Geissler-Plaum R, Schnell S. 2020. Spirosoma endbachense sp. nov., isolated from a natural salt meadow. Int. J. Syst. Evol. Microbiol. 71. 
  10. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, Chun J. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int. J. Syst. Evol. Microbiol. 67: 1613-1617.