Acknowledgement
This study was supported by the National Research Foundation of Korea (NRF-2022M3A9H1016308, NRF-2022R1F1A1066611, NRF-2023R1A2C2007120), the Ministry of SMEs and startups (S3098634), the Korean Fund for Regenerative Medicine (2021M3E5E5096744), and the KIST Institutional Program (Project No.2Z05790-19-037).
References
- Frazer LC, Good M. Intestinal epithelium in early life. Mucosal Immunol 2022;15:1181-1187 https://doi.org/10.1038/s41385-022-00579-8
- Martini E, Krug SM, Siegmund B, Neurath MF, Becker C. Mend Your fences: the epithelial barrier and its relationship with mucosal immunity in inflammatory bowel disease. Cell Mol Gastroenterol Hepatol 2017;4:33-46 https://doi.org/10.1016/j.jcmgh.2017.03.007
- Barker N, van Es JH, Kuipers J, Kujala P, van den Born M, Cozijnsen M, Haegebarth A, Korving J, Begthel H, Peters PJ, Clevers H. Identification of stem cells in small intestine and colon by marker gene Lgr5. Nature 2007;449:1003-1007 https://doi.org/10.1038/nature06196
- Lancaster MA, Knoblich JA. Organogenesis in a dish: modeling development and disease using organoid technologies. Science 2014;345:1247125
- Fujii M, Matano M, Toshimitsu K, Takano A, Mikami Y, Nishikori S, Sugimoto S, Sato T. Human intestinal organoids maintain self-renewal capacity and cellular diversity in niche-inspired culture condition. Cell Stem Cell 2018;23:787-793.e6 https://doi.org/10.1016/j.stem.2018.11.016
- Najjar SA, Davis BM, Albers KM. Epithelial-neuronal communication in the colon: implications for visceral pain. Trends Neurosci 2020;43:170-181 https://doi.org/10.1016/j.tins.2019.12.007
- Walsh KT, Zemper AE. The enteric nervous system for epithelial researchers: basic anatomy, techniques, and interactions with the epithelium. Cell Mol Gastroenterol Hepatol 2019;8:369-378 https://doi.org/10.1016/j.jcmgh.2019.05.003
- Ten Hove AS, Seppen J, de Jonge WJ. Neuronal innervation of the intestinal crypt. Am J Physiol Gastrointest Liver Physiol 2021;320:G193-G205 https://doi.org/10.1152/ajpgi.00239.2020
- Zhang W, Lyu M, Bessman NJ, Xie Z, Arifuzzaman M, Yano H, Parkhurst CN, Chu C, Zhou L, Putzel GG, Li TT, Jin WB, Zhou J; JRI Live Cell Bank; Hu H, Tsou AM, Guo CJ, Artis D. Gut-innervating nociceptors regulate the intestinal microbiota to promote tissue protection. Cell 2022;185:4170-4189.e20 https://doi.org/10.1016/j.cell.2022.09.008
- Yang D, Jacobson A, Meerschaert KA, Sifakis JJ, Wu M, Chen X, Yang T, Zhou Y, Anekal PV, Rucker RA, Sharma D, Sontheimer-Phelps A, Wu GS, Deng L, Anderson MD, Choi S, Neel D, Lee N, Kasper DL, Jabri B, Huh JR, Johansson M, Thiagarajah JR, Riesenfeld SJ, Chiu IM. Nociceptor neurons direct goblet cells via a CGRP-RAMP1 axis to drive mucus production and gut barrier protection. Cell 2022;185:4190-4205.e25 https://doi.org/10.1016/j.cell.2022.09.024
- Worthington JJ, Reimann F, Gribble FM. Enteroendocrine cells-sensory sentinels of the intestinal environment and orchestrators of mucosal immunity. Mucosal Immunol 2018;11:3-20 https://doi.org/10.1038/mi.2017.73
- Nagy N, Goldstein AM. Enteric nervous system development: a crest cell's journey from neural tube to colon. Semin Cell Dev Biol 2017;66:94-106 https://doi.org/10.1016/j.semcdb.2017.01.006
- Lyoo KS, Kim HM, Lee B, Che YH, Kim SJ, Song D, Hwang W, Lee S, Park JH, Na W, Yun SP, Kim YJ. Direct neuronal infection of SARS-CoV-2 reveals cellular and molecular pathology of chemosensory impairment of COVID19 patients. Emerg Microbes Infect 2022;11:406-411 https://doi.org/10.1080/22221751.2021.2024095
- Crespo M, Vilar E, Tsai SY, Chang K, Amin S, Srinivasan T, Zhang T, Pipalia NH, Chen HJ, Witherspoon M, Gordillo M, Xiang JZ, Maxfield FR, Lipkin S, Evans T, Chen S. Colonic organoids derived from human induced pluripotent stem cells for modeling colorectal cancer and drug testing. Nat Med 2017;23:878-884 https://doi.org/10.1038/nm.4355
- Munera JO, Sundaram N, Rankin SA, Hill D, Watson C, Mahe M, Vallance JE, Shroyer NF, Sinagoga KL, Zarzoso-Lacoste A, Hudson JR, Howell JC, Chatuvedi P, Spence JR, Shannon JM, Zorn AM, Helmrath MA, Wells JM. Differentiation of human pluripotent stem cells into colonic organoids via transient activation of BMP signaling. Cell Stem Cell 2017;21:51-64.e6 https://doi.org/10.1016/j.stem.2017.05.020
- Kwon O, Yu WD, Son YS, Jung KB, Lee H, Son MY. Generation of highly expandable intestinal spheroids composed of stem cells. Int J Stem Cells 2022;15:104-111 https://doi.org/10.15283/ijsc21209
- Mukherjee-Clavin B, Mi R, Kern B, Choi IY, Lim H, Oh Y, Lannon B, Kim KJ, Bell S, Hur JK, Hwang W, Che YH, Habib O, Baloh RH, Eggan K, Brandacher G, Hoke A, Studer L, Kim YJ, Lee G. Comparison of three congruent patient-specific cell types for the modelling of a human genetic Schwann-cell disorder. Nat Biomed Eng 2019;3:571-582 https://doi.org/10.1038/s41551-019-0381-8
- Oh Y, Cho GS, Li Z, Hong I, Zhu R, Kim MJ, Kim YJ, Tampakakis E, Tung L, Huganir R, Dong X, Kwon C, Lee G. Functional coupling with cardiac muscle promotes maturation of hPSC-derived sympathetic neurons. Cell Stem Cell 2016;19:95-106 https://doi.org/10.1016/j.stem.2016.05.002
- Gu W, Wang H, Huang X, Kraiczy J, Singh PNP, Ng C, Dagdeviren S, Houghton S, Pellon-Cardenas O, Lan Y, Nie Y, Zhang J, Banerjee KK, Onufer EJ, Warner BW, Spence J, Scherl E, Rafii S, Lee RT, Verzi MP, Redmond D, Longman R, Helin K, Shivdasani RA, Zhou Q. SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling. Cell Stem Cell 2022;29:101-115.e10 https://doi.org/10.1016/j.stem.2021.09.004
- Dekkers JF, Wiegerinck CL, de Jonge HR, Bronsveld I, Janssens HM, de Winter-de Groot KM, Brandsma AM, de Jong NW, Bijvelds MJ, Scholte BJ, Nieuwenhuis EE, van den Brink S, Clevers H, van der Ent CK, Middendorp S, Beekman JM. A functional CFTR assay using primary cystic fibrosis intestinal organoids. Nat Med 2013;19:939-945 https://doi.org/10.1038/nm.3201
- Kim YJ, Lim H, Li Z, Oh Y, Kovlyagina I, Choi IY, Dong X, Lee G. Generation of multipotent induced neural crest by direct reprogramming of human postnatal fibroblasts with a single transcription factor. Cell Stem Cell 2014;15:497-506 https://doi.org/10.1016/j.stem.2014.07.013
- Ramalingam S, Daughtridge GW, Johnston MJ, Gracz AD, Magness ST. Distinct levels of Sox9 expression mark colon epithelial stem cells that form colonoids in culture. Am J Physiol Gastrointest Liver Physiol 2012;302:G10-G20 https://doi.org/10.1152/ajpgi.00277.2011
- Linan-Rico A, Ochoa-Cortes F, Beyder A, Soghomonyan S, Zuleta-Alarcon A, Coppola V, Christofi FL. Mechanosensory signaling in enterochromaffin cells and 5-HT release: potential implications for gut inflammation. Front Neurosci 2016;10:564
- Goode T, O'Connor T, Hopkins A, Moriarty D, O'Sullivan GC, Collins JK, O'Donoghue D, Baird AW, O'Connell J, Shanahan F. Neurokinin-1 receptor (NK-1R) expression is induced in human colonic epithelial cells by proinflammatory cytokines and mediates proliferation in response to substance P. J Cell Physiol 2003;197:30-41 https://doi.org/10.1002/jcp.10234
- Nerurkar NL, Mahadevan L, Tabin CJ. BMP signaling controls buckling forces to modulate looping morphogenesis of the gut. Proc Natl Acad Sci U S A 2017;114:2277-2282 https://doi.org/10.1073/pnas.1700307114
- Castillo D, Puig S, Iglesias M, Seoane A, de Bolos C, Munitiz V, Parrilla P, Comerma L, Poulsom R, Krishnadath KK, Grande L, Pera M. Activation of the BMP4 pathway and early expression of CDX2 characterize non-specialized columnar metaplasia in a human model of Barrett's esophagus. J Gastrointest Surg 2012;16:227-237; discussion 237 https://doi.org/10.1007/s11605-011-1758-5
- Zhou G, Sun YG, Wang HB, Wang WQ, Wang XW, Fang DC. Acid and bile salt up-regulate BMP4 expression in human esophageal epithelium cells. Scand J Gastroenterol 2009;44:926-932 https://doi.org/10.1080/00365520902998661
- Moore-Scott BA, Opoka R, Lin SC, Kordich JJ, Wells JM. Identification of molecular markers that are expressed in discrete anterior-posterior domains of the endoderm from the gastrula stage to mid-gestation. Dev Dyn 2007;236:1997-2003 https://doi.org/10.1002/dvdy.21204
- Parikh K, Antanaviciute A, Fawkner-Corbett D, Jagielowicz M, Aulicino A, Lagerholm C, Davis S, Kinchen J, Chen HH, Alham NK, Ashley N, Johnson E, Hublitz P, Bao L, Lukomska J, Andev RS, Bjorklund E, Kessler BM, Fischer R, Goldin R, Koohy H, Simmons A. Colonic epithelial cell diversity in health and inflammatory bowel disease. Nature 2019;567:49-55 https://doi.org/10.1038/s41586-019-0992-y
- Dharshika C, Gulbransen BD. Enteric neuromics: how high-throughput "Omics" deepens our understanding of enteric nervous system genetic architecture. Cell Mol Gastroenterol Hepatol 2023;15:487-504 https://doi.org/10.1016/j.jcmgh.2022.10.019
- Uesaka T, Young HM, Pachnis V, Enomoto H. Development of the intrinsic and extrinsic innervation of the gut. Dev Biol 2016;417:158-167 https://doi.org/10.1016/j.ydbio.2016.04.016
- McMahon D. Chemical messengers in development: a hypothesis. Science 1974;185:1012-1021 https://doi.org/10.1126/science.185.4156.1012
- LoTurco JJ, Owens DF, Heath MJ, Davis MB, Kriegstein AR. GABA and glutamate depolarize cortical progenitor cells and inhibit DNA synthesis. Neuron 1995;15:1287-1298 https://doi.org/10.1016/0896-6273(95)90008-X
- Demarque M, Represa A, Becq H, Khalilov I, Ben-Ari Y, Aniksztejn L. Paracrine intercellular communication by a Ca2+- and SNARE-independent release of GABA and glutamate prior to synapse formation. Neuron 2002;36:1051-1061 https://doi.org/10.1016/S0896-6273(02)01053-X
- Ben-Ari Y, Gaiarsa JL, Tyzio R, Khazipov R. GABA: a pioneer transmitter that excites immature neurons and generates primitive oscillations. Physiol Rev 2007;87:1215-1284 https://doi.org/10.1152/physrev.00017.2006
- Yun W, Kim YJ, Lee G. Direct conversion to achieve glial cell fates: oligodendrocytes and Schwann cells. Int J Stem Cells 2022;15:14-25 https://doi.org/10.15283/ijsc22008
- Wang H, Foong JPP, Harris NL, Bornstein JC. Enteric neuroimmune interactions coordinate intestinal responses in health and disease. Mucosal Immunol 2022;15:27-39 https://doi.org/10.1038/s41385-021-00443-1
- Dunlop SP, Jenkins D, Neal KR, Spiller RC. Relative importance of enterochromaffin cell hyperplasia, anxiety, and depression in postinfectious IBS. Gastroenterology 2003;125:1651-1659 https://doi.org/10.1053/j.gastro.2003.09.028
- Barbara G, Stanghellini V, De Giorgio R, Cremon C, Cottrell GS, Santini D, Pasquinelli G, Morselli-Labate AM, Grady EF, Bunnett NW, Collins SM, Corinaldesi R. Activated mast cells in proximity to colonic nerves correlate with abdominal pain in irritable bowel syndrome. Gastroenterology 2004;126:693-702 https://doi.org/10.1053/j.gastro.2003.11.055
- Atkinson W, Lockhart S, Whorwell PJ, Keevil B, Houghton LA. Altered 5-hydroxytryptamine signaling in patients with constipation- and diarrhea-predominant irritable bowel syndrome. Gastroenterology 2006;130:34-43 https://doi.org/10.1053/j.gastro.2005.09.031
- Barbara G, Wang B, Stanghellini V, de Giorgio R, Cremon C, Di Nardo G, Trevisani M, Campi B, Geppetti P, Tonini M, Bunnett NW, Grundy D, Corinaldesi R. Mast cell-dependent excitation of visceral-nociceptive sensory neurons in irritable bowel syndrome. Gastroenterology 2007;132:26-37 https://doi.org/10.1053/j.gastro.2006.11.039
- Park NY, Koh A. From the dish to the real world: modeling interactions between the gut and microorganisms in gut organoids by tailoring the gut milieu. Int J Stem Cells 2022;15:70-84 https://doi.org/10.15283/ijsc21243
- Lee H, Son MY. Current challenges associated with the use of human induced pluripotent stem cell-derived organoids in regenerative medicine. Int J Stem Cells 2021;14:9-20 https://doi.org/10.15283/ijsc20140