Acknowledgement
We thank members of the Lee laboratory for helpful discussions, especially Laurence Seabrook, Yujin Chun, and Sunhee Jung, for their feedback on the manuscript. We apologize to authors whose work was not cited due to space limitations. This work was supported by the Department of Defense grant TS200022.
References
- Barbieri, I. and Kouzarides, T. (2020). Role of RNA modifications in cancer. Nat. Rev. Cancer 20, 303-322. https://doi.org/10.1038/s41568-020-0253-2
- Batista, P.J., Molinie, B., Wang, J., Qu, K., Zhang, J., Li, L., Bouley, D.M., Lujan, E., Haddad, B., Daneshvar, K., et al. (2014). M6A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707-719. https://doi.org/10.1016/j.stem.2014.09.019
- Bertero, A., Brown, S., Madrigal, P., Osnato, A., Ortmann, D., Yiangou, L., Kadiwala, J., Hubner, N.C., De Los Mozos, I.R., Sadee, C., et al. (2018). The SMAD2/3 interactome reveals that TGFβ controls m 6 A mRNA methylation in pluripotency. Nature 555, 256-259. https://doi.org/10.1038/nature25784
- Bokar, J.A., Rath-Shambaugh, M.E., Ludwiczak, R., Narayan, P., and Rottman, F. (1994). Characterization and partial purification of mRNA N6-adenosine methyltransferase from HeLa cell nuclei. Internal mRNA methylation requires a multisubunit complex. J. Biol. Chem. 269, 17697-17704. https://doi.org/10.1016/S0021-9258(17)32497-3
- Bokar, J.A., Shambaugh, M.E., Polayes, D., Matera, A.G., and Rottman, F.M. (1997). Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. RNA 3, 1233-1247.
- Borea, P.A., Varani, K., Vincenzi, F., Baraldi, P.G., Tabrizi, M.A., Merighi, S., and Gessi, S. (2015). The A 3 adenosine receptor: history and perspectives. Pharmacol. Rev. 67, 74-102. https://doi.org/10.1124/pr.113.008540
- Boriack-Sjodin, P.A., Margarit, S.M., Bar-Sagi, D., and Kuriyan, J. (1998). The structural basis of the activation of Ras by Sos. Nature 394, 337-343. https://doi.org/10.1038/28548
- Bujnicki, J.M., Feder, M., Radlinska, M., and Blumenthal, R.M. (2002). Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m6A methyltransferase. J. Mol. Evol. 55, 431-444. https://doi.org/10.1007/s00239-002-2339-8
- Chen, W., Zhang, L., Zheng, G., Fu, Y., Ji, Q., Liu, F., Chen, H., and He, C. (2014). Crystal structure of the RNA demethylase ALKBH5 from zebrafish. FEBS Lett. 588, 892-898. https://doi.org/10.1016/j.febslet.2014.02.021
- Cho, S., Lee, G., Pickering, B.F., Jang, C., Park, J.H., He, L., Mathur, L., Kim, S.S., Jung, S., Tang, H.W., et al. (2021). mTORC1 promotes cell growth via m6A-dependent mRNA degradation. Mol. Cell 81, 2064-2075.e8. https://doi.org/10.1016/j.molcel.2021.03.010
- Davies, H., Bignell, G.R., Cox, C., Stephens, P., Edkins, S., Clegg, S., Teague, J., Woffendin, H., Garnett, M.J., Bottomley, W., et al. (2002). Mutations of the BRAF gene in human cancer. Nature 417, 949-954. https://doi.org/10.1038/nature00766
- Derynck, R. and Zhang, Y.E. (2003). Smad-dependent and Smad-independent pathways in TGF-beta family signalling. Nature 425, 577-584. https://doi.org/10.1038/nature02006
- Dominissini, D., Moshitch-Moshkovitz, S., Schwartz, S., Salmon-Divon, M., Ungar, L., Osenberg, S., Cesarkas, K., Jacob-Hirsch, J., Amariglio, N., Kupiec, M., et al. (2012). Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 485, 201-206. https://doi.org/10.1038/nature11112
- Fang, R., Chen, X., Zhang, S., Shi, H., Ye, Y., Shi, H., Zou, Z., Li, P., Guo, Q., Ma, L., et al. (2021). EGFR/SRC/ERK-stabilized YTHDF2 promotes cholesterol dysregulation and invasive growth of glioblastoma. Nat. Commun. 12, 177. https://doi.org/10.1038/s41467-020-20379-7
- Fu, Y., Jia, G., Pang, X., Wang, R.N., Wang, X., Li, C.J., Smemo, S., Dai, Q., Bailey, K.A., Nobrega, M.A., et al. (2013). FTO-mediated formation of N6-hydroxymethyladenosine and N 6-formyladenosine in mammalian RNA. Nat. Commun. 4, 1798. https://doi.org/10.1038/ncomms2822
- Fujiwara, Y., Wada, K., and Kabuta, T. (2017). Lysosomal degradation of intracellular nucleic acids-multiple autophagic pathways. J. Biochem. 161, 145-154.
- Geula, S., Moshitch-Moshkovitz, S., Dominissini, D., Mansour, A.A.F., Kol, N., Salmon-Divon, M., Hershkovitz, V., Peer, E., Mor, N., Manor, Y.S., et al. (2015). m6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation. Science 347, 1002-1006. https://doi.org/10.1126/science.1261417
- Guengerich, F.P. (2015). Introduction: Metals in biology: α-Ketoglutarate/iron-dependent dioxygenases. J. Biol. Chem. 290, 20700-20701. https://doi.org/10.1074/jbc.R115.675652
- Han, D., Longhini, A.P., Zhang, X., Hoang, V., Wilson, M.Z., and Kosik, K.S. (2022). Dynamic assembly of the mRNA m6A methyltransferase complex is regulated by METTL3 phase separation. PLoS Biol. 20, e3001535. https://doi.org/10.1371/journal.pbio.3001535
- Hata, A. and Chen, Y.G. (2016). TGF-β signaling from receptors to smads. Cold Spring Harb. Perspect. Biol. 8, a022061. https://doi.org/10.1101/cshperspect.a022061
- He, P.C. and He, C. (2021). m 6 A RNA methylation: from mechanisms to therapeutic potential. EMBO J. 40, e105977.
- Hirayama, M., Wei, F.Y., Chujo, T., Oki, S., Yakita, M., Kobayashi, D., Araki, N., Takahashi, N., Yoshida, R., Nakayama, H., et al. (2020). FTO demethylates cyclin D1 mRNA and controls cell-cycle progression. Cell Rep. 31, 107464. https://doi.org/10.1016/j.celrep.2020.03.028
- Hsu, P.J., Zhu, Y., Ma, H., Guo, Y., Shi, X., Liu, Y., Qi, M., Lu, Z., Shi, H., Wang, J., et al. (2017). Ythdc2 is an N6 -methyladenosine binding protein that regulates mammalian spermatogenesis. Cell Res. 27, 1115-1127. https://doi.org/10.1038/cr.2017.99
- Huang, H., Weng, H., and Chen, J. (2020). m6A modification in coding and non-coding RNAs: roles and therapeutic implications in cancer. Cancer Cell 37, 270-288. https://doi.org/10.1016/j.ccell.2020.02.004
- Huang, H., Weng, H., Sun, W., Qin, X., Shi, H., Wu, H., Zhao, B.S., Mesquita, A., Liu, C., Yuan, C.L., et al. (2018). Recognition of RNA N 6 -methyladenosine by IGF2BP proteins enhances mRNA stability and translation. Nat. Cell Biol. 20, 285-295. https://doi.org/10.1038/s41556-018-0045-z
- Huang, H., Weng, H., Zhou, K., Wu, T., Zhao, B.S., Sun, M., Chen, Z., Deng, X., Xiao, G., Auer, F., et al. (2019). Histone H3 trimethylation at lysine 36 guides m6A RNA modification co-transcriptionally. Nature 567, 414-419. https://doi.org/10.1038/s41586-019-1016-7
- James, D., Levine, A.J., Besser, D., and Hemmati-Brivanlou, A. (2005). TGFβ/activin/nodal signaling is necessary for the maintenance of pluripotency in human embryonic stem cells. Development 132, 1273-1282. https://doi.org/10.1242/dev.01706
- Jia, G., Fu, Y., Zhao, X., Dai, Q., Zheng, G., Yang, Y., Yi, C., Lindahl, T., Pan, T., Yang, Y.G., et al. (2011). N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nat. Chem. Biol. 7, 885-887. https://doi.org/10.1038/nchembio.687
- Kasowitz, S.D., Ma, J., Anderson, S.J., Leu, N.A., Xu, Y., Gregory, B.D., Schultz, R.M., and Wang, P.J. (2018). Nuclear m6A reader YTHDC1 regulates alternative polyadenylation and splicing during mouse oocyte development. PLoS Genet. 14, e1007412. https://doi.org/10.1371/journal.pgen.1007412
- Kim, J. and Lee, G. (2021). Metabolic control of m6a rna modification. Metabolites 11, 80. https://doi.org/10.3390/metabo11020080
- Knuckles, P., Lence, T., Haussmann, I.U., Jacob, D., Kreim, N., Carl, S.H., Masiello, I., Hares, T., Villasenor, R., Hess, D., et al. (2018). Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor RbM15/spenito to the m6 a machinery component Wtap/Fl(2)d. Genes Dev. 32, 415-429. https://doi.org/10.1101/gad.309146.117
- Lavoie, H. and Therrien, M. (2015). Regulation of RAF protein kinases in ERK signalling. Nat. Rev. Mol. Cell Biol. 16, 281-298. https://doi.org/10.1038/nrm3979
- Lavoie, H., Gagnon, J., and Therrien, M. (2020). ERK signalling: a master regulator of cell behaviour, life and fate. Nat. Rev. Mol. Cell Biol. 21, 607-632. https://doi.org/10.1038/s41580-020-0255-7
- Lee, G., Zheng, Y., Cho, S., Jang, C., England, C., Dempsey, J.M., Yu, Y., Liu, X., He, L., Cavaliere, P.M., et al. (2017). Post-transcriptional regulation of de novo lipogenesis by mTORC1-S6K1-SRPK2 signaling. Cell 171, 1545-1558. e18. https://doi.org/10.1016/j.cell.2017.10.037
- Lee, Y., Choe, J., Park, O.H., and Kim, Y.K. (2020). Molecular mechanisms driving mRNA degradation by m6A modification. Trends Genet. 36, 177-188. https://doi.org/10.1016/j.tig.2019.12.007
- Li, A., Chen, Y.S., Ping, X.L., Yang, X., Xiao, W., Yang, Y., Sun, H.Y., Zhu, Q., Baidya, P., Wang, X., et al. (2017). Cytoplasmic m 6 A reader YTHDF3 promotes mRNA translation. Cell Res. 27, 444-447. https://doi.org/10.1038/cr.2017.10
- Li, S., Balmain, A., and Counter, C.M. (2018). A model for RAS mutation patterns in cancers: finding the sweet spot. Nat. Rev. Cancer 18, 767-777. https://doi.org/10.1038/s41568-018-0076-6
- Lin, X., Chai, G., Wu, Y., Li, J., Chen, F., Liu, J., Luo, G., Tauler, J., Du, J., Lin, S., et al. (2019). RNA m 6 A methylation regulates the epithelial mesenchymal transition of cancer cells and translation of Snail. Nat. Commun. 10, 2065. https://doi.org/10.1038/s41467-019-09865-9
- Liu, J., Eckert, M.A., Harada, B.T., Liu, S.M., Lu, Z., Yu, K., Tienda, S.M., Chryplewicz, A., Zhu, A.C., Yang, Y., et al. (2018). m 6 A mRNA methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer. Nat. Cell Biol. 20, 1074-1083. https://doi.org/10.1038/s41556-018-0174-4
- Liu, J., Yue, Y., Han, D., Wang, X., Fu, Y., Zhang, L., Jia, G., Yu, M., Lu, Z., Deng, X., et al. (2014). A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation. Nat. Chem. Biol. 10, 93-95. https://doi.org/10.1038/nchembio.1432
- Losman, J.A., Koivunen, P., and Kaelin, W.G. (2020). 2-Oxoglutaratedependent dioxygenases in cancer. Nat. Rev. Cancer 20, 710-726. https://doi.org/10.1038/s41568-020-00303-3
- Ma, X.M. and Blenis, J. (2009). Molecular mechanisms of mTOR-mediated translational control. Nat. Rev. Mol. Cell Biol. 10, 307-318. https://doi.org/10.1038/nrm2672
- Mao, Y., Dong, L., Liu, X.M., Guo, J., Ma, H., Shen, B., and Qian, S.B. (2019). m6A in mRNA coding regions promotes translation via the RNA helicase-containing YTHDC2. Nat. Commun. 10, 5332. https://doi.org/10.1038/s41467-019-13317-9
- Mathsyaraja, H., Freie, B., Cheng, P.F., Babaeva, E., Catchpole, J.T., Janssens, D., Henikoff, S., and Eisenman, R.N. (2019). Max deletion destabilizes MYC protein and abrogates Eµ-Myc lymphomagenesis. Genes Dev. 33, 1252-1264. https://doi.org/10.1101/gad.325878.119
- Mauer, J., Luo, X., Blanjoie, A., Jiao, X., Grozhik, A.V., Patil, D.P., Linder, B., Pickering, B.F., Vasseur, J.J., Chen, Q., et al. (2017). Reversible methylation of m6 Am in the 5' cap controls mRNA stability. Nature 541, 371-375. https://doi.org/10.1038/nature21022
- Mendoza, M.C., Er, E.E., and Blenis, J. (2011). The Ras-ERK and PI3K-mTOR pathways: cross-talk and compensation. Trends Biochem. Sci. 36, 320-328. https://doi.org/10.1016/j.tibs.2011.03.006
- Meyer, K.D. and Jaffrey, S.R. (2017). Rethinking m6A readers, writers, and erasers. Annu. Rev. Cell Dev. Biol. 33, 319-342. https://doi.org/10.1146/annurev-cellbio-100616-060758
- Meyer, K.D., Patil, D.P., Zhou, J., Zinoviev, A., Skabkin, M.A., Elemento, O., Pestova, T.V., Qian, S.B., and Jaffrey, S.R. (2015). 5' UTR m6A promotes cap-independent translation. Cell 163, 999-1010. https://doi.org/10.1016/j.cell.2015.10.012
- Meyer, K.D., Saletore, Y., Zumbo, P., Elemento, O., Mason, C.E., and Jaffrey, S.R. (2012). Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149, 1635-1646. https://doi.org/10.1016/j.cell.2012.05.003
- Nosella, M.L. and Forman-Kay, J.D. (2021). Phosphorylation-dependent regulation of messenger RNA transcription, processing and translation within biomolecular condensates. Curr. Opin. Cell Biol. 69, 30-40. https://doi.org/10.1016/j.ceb.2020.12.007
- Ogawa, A., Nagiri, C., Shihoya, W., Inoue, A., Kawakami, K., Hiratsuka, S., Aoki, J., Ito, Y., Suzuki, T., Suzuki, T., et al. (2021). N6-methyladenosine (m6A) is an endogenous A3 adenosine receptor ligand. Mol. Cell 81, 659-674.e7.
- Patil, D.P., Chen, C.K., Pickering, B.F., Chow, A., Jackson, C., Guttman, M., and Jaffrey, S.R. (2016). M6 A RNA methylation promotes XIST-mediated transcriptional repression. Nature 537, 369-373. https://doi.org/10.1038/nature19342
- Patil, D.P., Pickering, B.F., and Jaffrey, S.R. (2018). Reading m6A in the transcriptome: m6A-binding proteins. Trends Cell Biol. 28, 113-127. https://doi.org/10.1016/j.tcb.2017.10.001
- Perry, R.P., Kelley, D.E., Friderici, K., and Rottman, F. (1975). The methylated constituents of L cell messenger RNA: evidence for an unusual cluster at the 5' terminus. Cell 4, 387-394. https://doi.org/10.1016/0092-8674(75)90159-2
- Ping, X.L., Sun, B.F., Wang, L., Xiao, W., Yang, X., Wang, W.J., Adhikari, S., Shi, Y., Lv, Y., Chen, Y.S., et al. (2014). Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase. Cell Res. 24, 177-189. https://doi.org/10.1038/cr.2014.3
- Ries, R.J., Zaccara, S., Klein, P., Olarerin-George, A., Namkoong, S., Pickering, B.F., Patil, D.P., Kwak, H., Lee, J.H., and Jaffrey, S.R. (2019). m6A enhances the phase separation potential of mRNA. Nature 571, 424-428. https://doi.org/10.1038/s41586-019-1374-1
- Roberts, P.J. and Der, C.J. (2007). Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer. Oncogene 26, 3291-3310. https://doi.org/10.1038/sj.onc.1210422
- Roundtree, I.A., Evans, M.E., Pan, T., and He, C. (2017b). Dynamic RNA modifications in gene expression regulation. Cell 169, 1187-1200. https://doi.org/10.1016/j.cell.2017.05.045
- Roundtree, I.A., Luo, G.Z., Zhang, Z., Wang, X., Zhou, T., Cui, Y., Sha, J., Huang, X., Guerrero, L., Xie, P., et al. (2017a). YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs. Elife 6, e31311. https://doi.org/10.7554/elife.31311
- Ruzicka, K., Zhang, M., Campilho, A., Bodi, Z., Kashif, M., Saleh, M., Eeckhout, D., El-Showk, S., Li, H., Zhong, S., et al. (2017). Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI. New Phytol. 215, 157-172. https://doi.org/10.1111/nph.14586
- Saxton, R.A. and Sabatini, D.M. (2017). mTOR signaling in growth, metabolism, and disease. Cell 168, 960-976. https://doi.org/10.1016/j.cell.2017.02.004
- Scholler, E., Weichmann, F., Treiber, T., Ringle, S., Treiber, N., Flatley, A., Feederle, R., Bruckmann, A., and Meister, G. (2018). Interactions, localization, and phosphorylation of the m 6 A generating METTL3 - METTL14 - WTAP complex. RNA 24, 499-512. https://doi.org/10.1261/rna.064063.117
- Schreiber-Agus, N., Chin, L., Chen, K., Torres, R., Rao, G., Guida, P., Skoultchi, A.I., and DePinho, R.A. (1995). An amino-terminal domain of Mxi1 mediates anti-myc oncogenic activity and interacts with a homolog of the yeast transcriptional repressor SIN3. Cell 80, 777-786. https://doi.org/10.1016/0092-8674(95)90356-9
- Shi, H., Wang, X., Lu, Z., Zhao, B.S., Ma, H., Hsu, P.J., Liu, C., and He, C. (2017). YTHDF3 facilitates translation and decay of N 6-methyladenosine-modified RNA. Cell Res. 27, 315-328. https://doi.org/10.1038/cr.2017.15
- Shimobayashi, M. and Hall, M.N. (2014). Making new contacts: the mTOR network in metabolism and signalling crosstalk. Nat. Rev. Mol. Cell Biol. 15, 155-162. https://doi.org/10.1038/nrm3757
- Sledz, P. and Jinek, M. (2016). Structural insights into the molecular mechanism of the m6A writer complex. Elife 5, e18434. https://doi.org/10.7554/elife.18434
- Song, H., Feng, X., Zhang, H., Luo, Y., Huang, J., Lin, M., Jin, J., Ding, X., Wu, S., Huang, H., et al. (2019). METTL3 and ALKBH5 oppositely regulate m6A modification of TFEB mRNA, which dictates the fate of hypoxia/reoxygenation-treated cardiomyocytes. Autophagy 15, 1419-1437. https://doi.org/10.1080/15548627.2019.1586246
- Sun, H.L., Zhu, A.C., Gao, Y., Terajima, H., Fei, Q., Liu, S., Zhang, L., Zhang, Z., Harada, B.T., He, Y.Y., et al. (2020). Stabilization of ERK-phosphorylated METTL3 by USP5 increases m6A methylation. Mol. Cell 80, 633-647.e7.
- Tanabe, A., Tanikawa, K., Tsunetomi, M., Takai, K., Ikeda, H., Konno, J., Torigoe, T., Maeda, H., Kutomi, G., Okita, K., et al. (2016). RNA helicase YTHDC2 promotes cancer metastasis via the enhancement of the efficiency by which HIF-1α mRNA is translated. Cancer Lett. 376, 34-42. https://doi.org/10.1016/j.canlet.2016.02.022
- Tang, H.W., Weng, J.H., Lee, W.X., Hu, Y., Gu, L., Cho, S., Lee, G., Binari, R., Li, C., Cheng, M.E., et al. (2021). mTORC1-chaperonin CCT signaling regulates m6A RNA methylation to suppress autophagy. Proc. Natl. Acad. Sci. U. S. A. 118, e2021945118. https://doi.org/10.1073/pnas.2021945118
- Thapar, R. (2015). Structural basis for regulation of RNA-binding proteins by phosphorylation. ACS Chem. Biol. 10, 652-666. https://doi.org/10.1021/cb500860x
- Tuck, M.T. (1992). The formation of internal 6-methyladenine residues in eucaryotic messenger RNA. Int. J. Biochem. 24, 379-386. https://doi.org/10.1016/0020-711X(92)90028-Y
- Villa, E., Sahu, U., O'Hara, B.P., Ali, E.S., Helmin, K.A., Asara, J.M., Gao, P., Singer, B.D., and Ben-Sahra, I. (2021). mTORC1 stimulates cell growth through SAM synthesis and m6A mRNA-dependent control of protein synthesis. Mol. Cell 81, 2076-2093.e9.
- Vu, L.P., Pickering, B.F., Cheng, Y., Zaccara, S., Nguyen, D., Minuesa, G., Chou, T., Chow, A., Saletore, Y., Mackay, M., et al. (2017). The N 6-methyladenosine (m 6 A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells. Nat. Med. 23, 1369-1376. https://doi.org/10.1038/nm.4416
- Wang, X., Feng, J., Xue, Y., Guan, Z., Zhang, D., Liu, Z., Gong, Z., Wang, Q., Huang, J., Tang, C., et al. (2016). Structural basis of N6-adenosine methylation by the METTL3-METTL14 complex. Nature 534, 575-578. https://doi.org/10.1038/nature18298
- Wang, X., Lu, Z., Gomez, A., Hon, G.C., Yue, Y., Han, D., Fu, Y., Parisien, M., Dai, Q., Jia, G., et al. (2014). N 6-methyladenosine-dependent regulation of messenger RNA stability. Nature 505, 117-120. https://doi.org/10.1038/nature12730
- Wang, X., Zhao, B.S., Roundtree, I.A., Lu, Z., Han, D., Ma, H., Weng, X., Chen, K., Shi, H., and He, C. (2015). N6-methyladenosine modulates messenger RNA translation efficiency. Cell 161, 1388-1399. https://doi.org/10.1016/j.cell.2015.05.014
- Wang, Y., Zhang, L., Ren, H., Ma, L., Guo, J., Mao, D., Lu, Z., Lu, L., and Yan, D. (2021). Role of Hakai in m6A modification pathway in Drosophila. Nat. Commun. 12, 2159. https://doi.org/10.1038/s41467-021-22424-5
- Wee, P. and Wang, Z. (2017). Epidermal growth factor receptor cell proliferation signaling pathways. Cancers (Basel) 9, 52. https://doi.org/10.3390/cancers9050052
- Wiener, D. and Schwartz, S. (2021). The epitranscriptome beyond m6A. Nat. Rev. Genet. 22, 119-131. https://doi.org/10.1038/s41576-020-00295-8
- Wojtas, M.N., Pandey, R.R., Mendel, M., Homolka, D., Sachidanandam, R., and Pillai, R.S. (2017). Regulation of m6A transcripts by the 3'→5' RNA helicase YTHDC2 is essential for a successful meiotic program in the mammalian germline. Mol. Cell 68, 374-387.e12. https://doi.org/10.1016/j.molcel.2017.09.021
- Xiao, W., Adhikari, S., Dahal, U., Chen, Y.S., Hao, Y.J., Sun, B.F., Sun, H.Y., Li, A., Ping, X.L., Lai, W.Y., et al. (2016). Nuclear m6A reader YTHDC1 regulates mRNA splicing. Mol. Cell 61, 507-519. https://doi.org/10.1016/j.molcel.2016.01.012
- Xu, C., Wang, X., Liu, K., Roundtree, I.A., Tempel, W., Li, Y., Lu, Z., He, C., and Min, J. (2014). Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain. Nat. Chem. Biol. 10, 927-929. https://doi.org/10.1038/nchembio.1654
- Yang, Y., Fan, X., Mao, M., Song, X., Wu, P., Zhang, Y., Jin, Y., Yang, Y., Chen, L.L., Wang, Y., et al. (2017). Extensive translation of circular RNAs driven by N 6 -methyladenosine. Cell Res. 27, 626-641. https://doi.org/10.1038/cr.2017.31
- Yu, F., Wei, J., Cui, X., Yu, C., Ni, W., Bungert, J., Wu, L., He, C., and Qian, Z. (2021). Post-translational modification of RNA m6A demethylase ALKBH5 regulates ROS-induced DNA damage response. Nucleic Acids Res. 49, 5779-5797. https://doi.org/10.1093/nar/gkab415
- Yue, H., Nie, X., Yan, Z., and Weining, S. (2019). N6-methyladenosine regulatory machinery in plants: composition, function and evolution. Plant Biotechnol. J. 17, 1194-1208. https://doi.org/10.1111/pbi.13149
- Yue, Y., Liu, J., Cui, X., Cao, J., Luo, G., Zhang, Z., Cheng, T., Gao, M., Shu, X., Ma, H., et al. (2018). VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell Discov. 4, 10. https://doi.org/10.1038/s41421-018-0019-0
- Zaccara, S. and Jaffrey, S.R. (2020). A unified model for the function of YTHDF proteins in regulating m6A-modified mRNA. Cell 181, 1582-1595. e18. https://doi.org/10.1016/j.cell.2020.05.012
- Zaccara, S., Ries, R.J., and Jaffrey, S.R. (2019). Reading, writing and erasing mRNA methylation. Nat. Rev. Mol. Cell Biol. 20, 608-624. https://doi.org/10.1038/s41580-019-0168-5
- Zhang, X., Wei, L.H., Wang, Y., Xiao, Y., Liu, J., Zhang, W., Yan, N., Amu, G., Tang, X., Zhang, L., et al. (2019). Structural insights into FTO's catalytic mechanism for the demethylation of multiple RNA substrates. Proc. Natl. Acad. Sci. U. S. A. 116, 2919-2924. https://doi.org/10.1073/pnas.1820574116
- Zhang, Y., Alexander, P.B., and Wang, X.F. (2017). TGF-β family signaling in the control of cell proliferation and survival. Cold Spring Harb. Perspect. Biol. 9, a022145. https://doi.org/10.1101/cshperspect.a022145
- Zhao, B.S., Wang, X., Beadell, A.V., Lu, Z., Shi, H., Kuuspalu, A., Ho, R.K., and He, C. (2017). M6 A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition. Nature 542, 475-478. https://doi.org/10.1038/nature21355
- Zhao, X., Yang, Y., Sun, B.F., Shi, Y., Yang, X., Xiao, W., Hao, Y.J., Ping, X.L., Chen, Y.S., Wang, W.J., et al. (2014). FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis. Cell Res. 24, 1403-1419. https://doi.org/10.1038/cr.2014.151
- Zheng, G., Dahl, J.A., Niu, Y., Fedorcsak, P., Huang, C.M., Li, C.J., Vagbo, C.B., Shi, Y., Wang, W.L., Song, S.H., et al. (2013). ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Mol. Cell 49, 18-29. https://doi.org/10.1016/j.molcel.2012.10.015
- Zhou, B., Liu, C., Xu, L., Yuan, Y., Zhao, J., Zhao, W., Chen, Y., Qiu, J., Meng, M., Zheng, Y., et al. (2021). N6-methyladenosine reader protein YT521-B homology domain-containing 2 suppresses liver steatosis by regulation of mRNA stability of lipogenic genes. Hepatology 73, 91-103. https://doi.org/10.1002/hep.31220
- Zhou, J., Wan, J., Gao, X., Zhang, X., Jaffrey, S.R., and Qian, S.B. (2015). Dynamic m6 A mRNA methylation directs translational control of heat shock response. Nature 526, 591-594. https://doi.org/10.1038/nature15377