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Mitochondrial sequence based characterization and morphometric assessment of Diara buffalo population

  • Received : 2021.06.08
  • Accepted : 2021.12.07
  • Published : 2022.07.01

Abstract

Objective: The present study is aimed at phenotypic characterization and mitochondrial d-loop analysis of indigenous "Diara" buffalo population, which are mostly confined to the villages on the South and North Gangetic marshy plains in the Bihar state of India. These buffaloes are well adapted and are best suited for ploughing and puddling the wet fields meant for paddy cultivation. Methods: Biometric data on 172 buffaloes were collected using a standard flexible tape measure. Animals are medium in size; the typical morphometric features are long head with a broad forehead and moderately long and erect ears. Genomic DNA was isolated from unrelated animals. The mtDNA d-loop 358-bp sequence data was generated and compared with 338 sequences belonging to riverine and swamp buffaloes. Results: Based on the mitochondrial d-loop analysis the Diara buffaloes were grouped along with the haplotypes reported for riverine buffalo. Sequence analysis revealed the presence of 7 mitochondrial D loop haplotypes with haplotype diversity of 0.9643. Five of the haplotypes were shared with established swamp breeds and with Buffalo population of Orissa in India. Conclusion: Morphometric analyses clearly shows distinguishing features like long and broad forehead which may be useful in identification. The germplasm of Diara buffalo is much adapted to the marshy banks of river Ganga and its tributaries. It constitutes a valuable genetic resource which needs to be conserved on priority basis.

Keywords

Acknowledgement

Authors extend special thanks to Dr Lavakumar Surarapu, NBAGR, Karnal for his assistance during the research work.

References

  1. Kumar S, Nagarajan M, Sandhu JS, Kumar N, Behl V, Nishanth G. Mitochondrial DNA analyses of Indian water buffalo support a distinct genetic origin of river and swamp buffalo. Anim Genet 2007;38:227-32. https://doi.org/10.1111/j.1365-2052.2007.01602.x
  2. George M, Balaine DS, Vij PK, Kumar S. Conservation and management of buffalo genetic resources of India. In: Nagarcenkar R, editor. Buffalo production and health. New Delhi, India: ICAR; 1988. pp. 31-7.
  3. ICAR-National Bureau of Animal Genetic Resources, 2022 [cited 2022 April 10]. Available from: https://nbagr.icar.gov.in/en/new-breeds-lines/
  4. Liu J, Ding X, Zeng Y, et al. Genetic diversity and phylogenetic evolution of tibetan sheep based on mtDNA D-loop sequences. PLoS ONE 2016;11:e0159308. https://doi.org/10.1371/journal.pone.0159308
  5. Yindee M, Vlamings BH, Wajjwalku W, et al. Y-chromosomal variation confirms independent domestications of swamp and river buffalo. Anim Genet 2010;41:433-5. https://doi.org/10.1111/j.1365-2052.2010.02020.x
  6. Nagarajan M, Nimisha K, Kumar S. Mitochondrial DNA variability of domesticriver buffalo (Bubalus bubalis) populations: genetic evidence for domestication of river buffalo in Indian subcontinent. Genome Biol Evol 2015;7:1252-9. https://doi.org/10.1093/gbe/evv067
  7. Dubey PK, Goyal S, Kumari N, Mishra SK, Arora R, Kataria RS. Genetic diversity within 5'upstream region of toll-like receptor 8 gene reveals differentiation of riverine and swamp buffaloes. Meta Gene 2013;1:24-32. https://doi.org/10.1016/j.mgene.2013.08.001
  8. Chandran P, Pandian SJ, DeyA, Kamal R, Kumari R. Production and reproduction performances of Diara buffaloes in the Gangetic basin of Bihar. Indian J Anim Sci 2015;85:770-3.
  9. Microsoft Corporation. Microsoft Office Excel; 2007. Available from: https://office.microsoft.com/excel
  10. IBM SPSS Statistics for Windows (Desktop), Version 21.0 Armonk, NY, USA: IBM Corp; 2001.
  11. Sambrook J, Russel DW. Molecular cloning: a laboratory manual 2001; 3rd edn. Cold Spring Harbour, New York, USA: Cold Spring Harbour Laboratory Press; 2001.
  12. MegAlign Bioinformatics Software. Madison, WI, USA: DNASTAR; 2014.
  13. Lei C, Zhang W, Chen H, et al. Two maternal lineages revealed by mitochondrial DNA D-loop sequences in Chinese native water buffaloes (Bubalus bubalis). Asian-Australas J Anim Sci 2007;20:471-6. https://doi.org/10.5713/ajas.2007.471
  14. Kierstein G, Vallinoto M, Silva A, Schneider MP, Iannuzzi L, Brenig B. Analysis of mitochondrial D-loop region casts new light on domestic water buffalo (Bubalus bubalis) phylogeny. Mol Phylogenet Evol 2004;30:308-24. https://doi.org/10.1016/S1055-7903(03)00221-5
  15. Kataria RS, Kathiravan P, Bulandi SS, Yadav NK, Dubey PK, Mishra BP. Assessment of genetic diversity, mutation drift equilibrium and mitochondrial D-loop variation in Toda buffalo-the endangered breed of South India. J Appl Anim Res 2009;35:67-72. https://doi.org/10.1080/09712119.2009.9706987
  16. Mishra BP, Prakash B, Kataria RS, et al. Cytogenetic profiling and mitochondrial DNA analysis reveal existence of swamp buffalo population in Manipur state. Indian J Anim Sci 2010;80:31-6.
  17. Saitou N, Nei M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-25.
  18. Kumar S, Stecher G, Tamura K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870-4. https://doi.org/10.1093/molbev/msw054
  19. Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009;25:1451-2. https://doi.org/10.1093/bioinformatics/btp187
  20. Bandelt HJ, Forster P, Rohl A. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 1999;16:37-48. https://doi.org/10.1093/oxfordjournals.molbev.a026036
  21. Chandran PC, Jegaveera Pandian S, Reena K, Dey A. Socioeconomic status and system of farming practices with Diara buffaloes in the middle gangetic plains of Bihar, India. Buffalo Bull 2019;38:469-83.
  22. Moioli B, Borghese A. Buffalo production and research. Rome, Italy: Food and Agriculture Organization of the United Nations; 2005. pp. 67-8.
  23. Shankar S, Mandal KG. Genetic and non-genetic factors affecting body weight of buffaloes. Vet World 2010;3:227-9.