과제정보
Thanks to Dr. Woojin Jung and Gawon Lee for providing images related to acceleration and harmonization, respectively.
참고문헌
- Bloch F. Nuclear induction. Phys Rev 1946;70:460-474
- Purcell EM, Torrey HC, Pound RV. Resonance absorption by nuclear magnetic moments in a solid. Phys Rev 1946;69:37-38
- Lauterbur PC. Image formation by induced local interactions. Examples employing nuclear magnetic resonance. Nature 1973;242:190-191
- Mansfield P, Maudsley AA. Medical imaging by NMR. Br J Radiol 1977;50:188-194
- Bernstein MA, King KF, Zhou XJ. Handbook of MRI pulse sequences. Burlington, MA: Elsevier 2004
- Liang ZP, Lauterbur PC. Principles of magnetic resonance imaging. Bellingham: SPIE Optical Engineering Press Bellingham 2000
- LeCun Y, Bengio Y, Hinton G. Deep learning. Nature 2015;521:436-444
- Lin DJ, Johnson PM, Knoll F, Lui YW. Artificial intelligence for MR image reconstruction: an overview for clinicians. J Magn Reson Imaging 2021;53:1015-1028
- Wang T, Lei Y, Fu Y, Wynne JF, Curran WJ, Liu T, et al. A review on medical imaging synthesis using deep learning and its clinical applications. J Appl Clin Med Phys 2021;22:11-36
- Choi KS, Sunwoo L. Artificial intelligence in neuroimaging: clinical applications. Investig Magn Reson Imaging 2022;26:1-9
- Lundervold AS, Lundervold A. An overview of deep learning in medical imaging focusing on MRI. Z Med Phys 2019;29:102-127
- Wang G, Ye JC, De Man B. Deep learning for tomographic image reconstruction. Nat Mach Intell 2020;2:737-748
- Brown RW, Cheng YCN, Haacke EM, Thompson MR, Venkatesan R. Magnetic resonance imaging: physical principles and sequence design. 2nd ed. Hoboken, NJ: John Wiley & Sons 2014
- Griswold MA, Jakob PM, Heidemann RM, Nittka M, Jellus V, Wang J, et al. Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 2002;47:1202-1210
- Pruessmann KP, Weiger M, Scheidegger MB, Boesiger P. SENSE: sensitivity encoding for fast MRI. Magn Reson Med 1999;42:952-962
- Deshmane A, Gulani V, Griswold MA, Seiberlich N. Parallel MR imaging. J Magn Reson Imaging 2012;36:55-72
- Blaimer M, Breuer F, Mueller M, Heidemann RM, Griswold MA, Jakob PM. SMASH, SENSE, PILS, GRAPPA: how to choose the optimal method. Top Magn Reson Imaging 2004;15:223-236
- Sodickson DK, Manning WJ. Simultaneous acquisition of spatial harmonics (SMASH): fast imaging with radiofrequency coil arrays. Magn Reson Med 1997;38:591-603
- Wang G, Ye JC, Mueller K, Fessler JA. Image reconstruction is a new frontier of machine learning. IEEE Trans Med Imaging 2018;37:1289-1296
- Razzak MI, Naz S, Zaib A. Deep learning for medical image processing: overview, challenges and the future. In Dey N, Ashour A, Borra S, eds. Classification in BioApps. Cham: Springer 2018:323-350
- Jin KH, McCann MT, Froustey E, Unser M. Deep convolutional neural network for inverse problems in imaging. IEEE Trans Image Process 2017;26:4509-4522
- Zhu B, Liu JZ, Cauley SF, Rosen BR, Rosen MS. Image reconstruction by domain-transform manifold learning. Nature 2018;555:487-492
- Lee D, Lee J, Ko J, Yoon J, Ryu K, Nam Y. Deep learning in MR image processing. Investig Magn Reson Imaging 2019;23:81-99
- Wang S, Su Z, Ying L, Peng X, Zhu S, Liang F, et al. Accelerating magnetic resonance imaging via deep learning. Proceedings of the 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016); 2016 Apr 13-16; Prague, Czech Republic: IEEE; 2016:514-517
- Lee D, Yoo J, Tak S, Ye JC. Deep residual learning for accelerated MRI using magnitude and phase networks. IEEE Trans Biomed Eng 2018;65:1985-1995
- Knoll F, Hammernik K, Zhang C, Moeller S, Pock T, Sodickson DK, et al. Deep-learning methods for parallel magnetic resonance imaging reconstruction: a survey of the current approaches, trends, and issues. IEEE Signal Process Mag 2020;37:128-140
- Jung W, Kim J, Ko J, Jeong G, Kim HG. Highly accelerated 3D MPRAGE using deep neural network-based reconstruction for brain imaging in children and young adults. Eur Radiol 2022;32:5468-5479
- Eo T, Jun Y, Kim T, Jang J, Lee HJ, Hwang D. KIKI-net: cross-domain convolutional neural networks for reconstructing undersampled magnetic resonance images. Magn Reson Med 2018;80:2188-2201
- Hammernik K, Klatzer T, Kobler E, Recht MP, Sodickson DK, Pock T, et al. Learning a variational network for reconstruction of accelerated MRI data. Magn Reson Med 2018;79:3055-3071
- Han Y, Sunwoo L, Ye JC. k-space deep learning for accelerated MRI. IEEE Trans Med Imaging 2020;39:377-386
- Knoll F, Murrell T, Sriram A, Yakubova N, Zbontar J, Rabbat M, et al. Advancing machine learning for MR image reconstruction with an open competition: overview of the 2019 fastMRI challenge. Magn Reson Med 2020;84:3054-3070
- Muckley MJ, Riemenschneider B, Radmanesh A, Kim S, Jeong G, Ko J, et al. Results of the 2020 fastMRI challenge for machine learning MR image reconstruction. IEEE Trans Med Imaging 2021;40:2306-2317
- Park J, Jung W, Choi EJ, Oh SH, Jang J, Shin D, et al. DIFFnet: diffusion parameter mapping network generalized for input diffusion gradient schemes and b-value. IEEE Trans Med Imaging 2022;41:491-499
- Haskell MW, Cauley SF, Bilgic B, Hossbach J, Splitthoff DN, Pfeuffer J, et al. Network accelerated motion estimation and reduction (NAMER): convolutional neural network guided retrospective motion correction using a separable motion model. Magn Reson Med 2019;82:1452-1461
- Feng L, Ma D, Liu F. Rapid MR relaxometry using deep learning: an overview of current techniques and emerging trends. NMR Biomed 2022;35:e4416
- Lee D, Moon WJ, Ye JC. Assessing the importance of magnetic resonance contrasts using collaborative generative adversarial networks. Nat Mach Intell 2020;2:34-42
- Ryu K, Nam Y, Gho SM, Jang J, Lee HJ, Cha J, et al. Data-driven synthetic MRI FLAIR artifact correction via deep neural network. J Magn Reson Imaging 2019;50:1413-1423
- Ryu KH, Baek HJ, Gho SM, Ryu K, Kim DH, Park SE, et al. Validation of deep learning-based artifact correction on synthetic FLAIR images in a different scanning environment. J Clin Med 2020;9:364
- Gong E, Pauly JM, Wintermark M, Zaharchuk G. Deep learning enables reduced gadolinium dose for contrast-enhanced brain MRI. J Magn Reson Imaging 2018;48:330-340
- Pasumarthi S, Tamir JI, Christensen S, Zaharchuk G, Zhang T, Gong E. A generic deep learning model for reduced gadolinium dose in contrast-enhanced brain MRI. Magn Reson Med 2021;86:1687-1700
- Liu F, Jang H, Kijowski R, Bradshaw T, McMillan AB. Deep learning MR imaging-based attenuation correction for PET/MR imaging. Radiology 2018;286:676-684
- Leynes AP, Yang J, Wiesinger F, Kaushik SS, Shanbhag DD, Seo Y, et al. Zero-echo-time and Dixon deep pseudo-CT (ZeDD CT): direct generation of pseudo-CT images for pelvic PET/MRI attenuation correction using deep convolutional neural networks with multiparametric MRI. J Nucl Med 2018;59:852-858
- Shin D, Kim Y, Oh C, An H, Park J, Kim J, et al. Deep reinforcement learning-designed radiofrequency waveform in MRI. Nat Mach Intell 2021;3:985-994
- Gezelter JD, Freeman R. Use of neural networks to design shaped radiofrequency pulses. J Magn Reson (1969) 1990;90:397-404
- Vinding MS, Skyum B, Sangill R, Lund TE. Ultrafast (milliseconds), multidimensional RF pulse design with deep learning. Magn Reson Med 2019;82:586-599
- Ma D, Gulani V, Seiberlich N, Liu K, Sunshine JL, Duerk JL, et al. Magnetic resonance fingerprinting. Nature 2013;495:187-192
- Bipin Mehta B, Coppo S, Frances McGivney D, Ian Hamilton J, Chen Y, Jiang Y, et al. Magnetic resonance fingerprinting: a technical review. Magn Reson Med 2019;81:25-46
- Hoppe E, Korzdorfer G, Wurfl T, Wetzl J, Lugauer F, Pfeuffer J, et al. Deep learning for magnetic resonance fingerprinting: a new approach for predicting quantitative parameter values from time series. Stud Health Technol Inform 2017;243:202-206
- Fang Z, Chen Y, Liu M, Xiang L, Zhang Q, Wang Q, et al. Deep learning for fast and spatially constrained tissue quantification from highly accelerated data in magnetic resonance fingerprinting. IEEE Trans Med Imaging 2019;38:2364-2374
- Moyer D, Ver Steeg G, Tax CMW, Thompson PM. Scanner invariant representations for diffusion MRI harmonization. Magn Reson Med 2020;84:2174-2189
- Guan H, Liu Y, Yang E, Yap PT, Shen D, Liu M. Multi-site MRI harmonization via attention-guided deep domain adaptation for brain disorder identification. Med Image Anal 2021;71:102076
- Dewey BE, Zhao C, Reinhold JC, Carass A, Fitzgerald KC, Sotirchos ES, et al. DeepHarmony: a deep learning approach to contrast harmonization across scanner changes. Magn Reson Imaging 2019;64:160-170
- Kustner T, Gatidis S, Liebgott A, Schwartz M, Mauch L, Martirosian P, et al. A machine-learning framework for automatic reference-free quality assessment in MRI. Magn Reson Imaging 2018;53:134-147
- Largent A, Kapse K, Barnett SD, De Asis-Cruz J, Whitehead M, Murnick J, et al. Image quality assessment of fetal brain MRI using multi-instance deep learning methods. J Magn Reson Imaging 2021;54:818-829
- Piccini D, Demesmaeker R, Heerfordt J, Yerly J, Di Sopra L, Masci PG, et al. Deep learning to automate reference-free image quality assessment of whole-heart MR images. Radiol Artif Intell 2020;2:e190123
- Ma X, Niu Y, Gu L, Wang Y, Zhao Y, Bailey J, et al. Understanding adversarial attacks on deep learning based medical image analysis systems. Pattern Recognit 2021;110:107332
- Madry A, Makelov A, Schmidt L, Tsipras D, Vladu A. Towards deep learning models resistant to adversarial attacks. arXiv [Preprint]. 2017 [cited October 30, 2022]. Available at: https://doi.org/10.48550/arXiv.1706.06083
- Antun V, Renna F, Poon C, Adcock B, Hansen AC. On instabilities of deep learning in image reconstruction and the potential costs of AI. Proc Natl Acad Sci U S A 2020;117:30088-30095
- Edupuganti V, Mardani M, Vasanawala S, Pauly J. Uncertainty quantification in deep MRI reconstruction. IEEE Trans Med Imaging 2021;40:239-250
- Knoll F, Zbontar J, Sriram A, Muckley MJ, Bruno M, Defazio A, et al. fastMRI: a publicly available raw k-space and DICOM dataset of knee images for accelerated MR image reconstruction using machine learning. Radiol Artif Intell 2020;2:e190007
- Akcakaya M, Moeller S, Weingartner S, Ug˘urbil K. Scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction: database-free deep learning for fast imaging. Magn Reson Med 2019;81:439-453
- Ulyanov D, Vedaldi A, Lempitsky V. Deep image prior. Proceedings of the 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR); 2018 Jun 18-23; Salt Lake City, UT, USA: IEEE; 2018:9446- 9454
- Yaman B, Hosseini SAH, Moeller S, Ellermann J, Ug˘urbil K, Akcakaya M. Self-supervised learning of physicsguided reconstruction neural networks without fully sampled reference data. Magn Reson Med 2020;84:3172-3191
- Kim TH, Garg P, Haldar JP. LORAKI: autocalibrated recurrent neural networks for autoregressive MRI reconstruction in k-space. arXiv [Preprint]. 2019 [cited October 30, 2022]. Available at: https://doi.org/10.48550/arXiv.1904.09390