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Shikimate Metabolic Pathway Engineering in Corynebacterium glutamicum

  • Park, Eunhwi (Department of Biological Sciences and Bioengineering, Inha University) ;
  • Kim, Hye-Jin (Department of Biological Sciences and Bioengineering, Inha University) ;
  • Seo, Seung-Yeul (STR Biotech Co., Ltd.) ;
  • Lee, Han-Na (STR Biotech Co., Ltd.) ;
  • Choi, Si-Sun (Department of Biological Sciences and Bioengineering, Inha University) ;
  • Lee, Sang Joung (STR Biotech Co., Ltd.) ;
  • Kim, Eung-Soo (Department of Biological Sciences and Bioengineering, Inha University)
  • Received : 2021.06.04
  • Accepted : 2021.08.02
  • Published : 2021.09.28

Abstract

Shikimate is a key high-demand metabolite for synthesizing valuable antiviral drugs, such as the anti-influenza drug, oseltamivir (Tamiflu). Microbial-based strategies for shikimate production have been developed to overcome the unstable and expensive supply of shikimate derived from traditional plant extraction processes. In this study, a microbial cell factory using Corynebacterium glutamicum was designed to overproduce shikimate in a fed-batch culture system. First, the shikimate kinase gene (aroK) responsible for converting shikimate to the next step was disrupted to facilitate the accumulation of shikimate. Several genes encoding the shikimate bypass route, such as dehydroshikimate dehydratase (QsuB), pyruvate kinase (Pyk1), and quinate/shikimate dehydrogenase (QsuD), were disrupted sequentially. An artificial operon containing several shikimate pathway genes, including aroE, aroB, aroF, and aroG were overexpressed to maximize the glucose uptake and intermediate flux. The rationally designed shikimate-overproducing C. glutamicum strain grown in an optimized medium produced approximately 37.3 g/l of shikimate in 7-L fed-batch fermentation. Overall, rational cell factory design and culture process optimization for the microbial-based production of shikimate will play a key role in complementing traditional plant-derived shikimate production processes.

Keywords

Acknowledgement

This work was carried out with the support of "Cooperative Research Program for Agriculture Science and Technology Development (Project No. PJ01563901)" Rural Development Administration, Republic of Korea and the National Research Foundation of Korea (NRF), and the Center for Women In Science, Engineering and Technology (WISET-2021-043) Grant funded by the Ministry of Science and ICT(MSIT) under the Program for Returners into R&D.

References

  1. Candeias NR, Assoah B, Simeonov SP. 2018. Production and synthetic modification of shikimic acid. Chem. Rev. 118: 10458-10550. https://doi.org/10.1021/acs.chemrev.8b00350
  2. Kogure T, Kubota T, Suda M, Hiraga K, Inui M. 2016. Metabolic engineering of Corynebacterium glutamicum for shikimate overproduction by growth-arrested cell reaction. Metab. Eng. 38: 204-216. https://doi.org/10.1016/j.ymben.2016.08.005
  3. Bochkov DV, Sysolyatin SV, Kalashnikov AI, Surmacheva IA. 2012. Shikimic acid: review of its analytical, isolation, and purification techniques from plant and microbial sources. J. Chem. Biol. 5: 5-17. https://doi.org/10.1007/s12154-011-0064-8
  4. Ghosh S, Chisti Y, Banerjee UC. 2012. Production of shikimic acid. Biotechnol. Adv. 30: 1425-1431. https://doi.org/10.1016/j.biotechadv.2012.03.001
  5. Kramer M, Bongaerts J, Bovenberg R, Kremer S, Muller U, Orf S, et al. 2003. Metabolic engineering for microbial production of shikimic acid. Metab. Eng. 5: 277-283. https://doi.org/10.1016/j.ymben.2003.09.001
  6. Martinez JA, Bolivar F, Escalante A. 2015. Shikimic acid production in Escherichia coli: from classical metabolic engineering strategies to omics applied to improve its production. Front. Bioeng. Biotechnol. 3: 145.
  7. Rawat G, Tripathi P, Saxena RK. 2013. Expanding horizons of shikimic acid. Recent progresses in production and its endless frontiers in application and market trends. Appl. Microbiol. Biotechnol. 97: 4277-4287. https://doi.org/10.1007/s00253-013-4840-y
  8. Li Z, Wang H, Ding D, Liu Y, Fang H, Chang Z, et al. 2020. Metabolic engineering of Escherichia coli for production of chemicals derived from the shikimate pathway. J. Ind. Microbiol. Biotechnol. 47: 525-535. https://doi.org/10.1007/s10295-020-02288-2
  9. Averesch NJH, Kromer JO. 2018. Metabolic engineering of the shikimate pathway for production of aromatics and derived compounds-present and future strain construction strategies. Front. Bioeng. Biotechnol. 6: 32. https://doi.org/10.3389/fbioe.2018.00032
  10. Noda S, Shirai T, Oyama S, Kondo A. 2015. Metabolic design of a platform Escherichia coli strain producing various chorismite derivatives. Metab. Eng. 33: 119-129. https://doi.org/10.1016/j.ymben.2015.11.007
  11. Lin Y, Sun X, Yuan Q, Yan Y. 2014. Extending shikimate pathway for the production of muconic acid and its precursor salicylic acid in Escherichia coli. Metab. Eng. 23: 62-69. https://doi.org/10.1016/j.ymben.2014.02.009
  12. Lee HN, Shin WS, Seo SY, Choi SS, Song JS, Kim JY, et al. 2018 Corynebacterium cell factory design and culture process optimization for muconic acid biosynthesis. Sci. Rep. 8: 18041. https://doi.org/10.1038/s41598-018-36320-4
  13. Choi S, Lee HN, Park E, Lee SJ, Kim ES. 2020. Recent advances in microbial production of cis,cis-muconic acid. Biomolecules 10: 1238. https://doi.org/10.3390/biom10091238
  14. Fujiwara R, Noda S, Tanaka T, Kondo A. 2020. Metabolic engineering of Escherichia coli for shikimate pathway derivative production from glucose-xylose co-substrate. Nat. Commun. 11: 279. https://doi.org/10.1038/s41467-019-14024-1
  15. Choi SS, Seo SY, Park SO, Lee HN, Song JS, Kim JY, et al. 2019. Cell factory design and culture process optimization for dehydroshikimate biosynthesis in Escherichia coli. Front. Bioeng. Biotechnol. 7: 241. https://doi.org/10.3389/fbioe.2019.00241
  16. Zahoor A, Lindner SN, Wendisch VF. 2012. Metabolic engineering of Corynebacterium glutamicum aimed at alternative carbon sources and new products. Comput. Struct. Biotechnol. J. 3: e20120004.
  17. Hermann T. 2003. Industrial production of amino acids by coryneform bacteria. J. Biotechnol. 104: 155-172. https://doi.org/10.1016/S0168-1656(03)00149-4
  18. Ikeda M, Takeno S. 2013. Amino acid production by Corynebacterium glutamicum, pp.107-147. In: Yukawa H, Inui M (eds.), Corynebacterium glutamicum. Microbiology Monographs, vol 23. Springer, Berlin, Heidelberg. Germany.
  19. Jiang Y, Sheng Q, Wu XY, Ye BC, Zhang B. 2021. L-arginine production in Corynebacterium glutamicum: manipulation and optimization of the metabolic process. Crit. Rev. Biotechnol. 41: 172-185. https://doi.org/10.1080/07388551.2020.1844625
  20. Kondoh M, Hirasawa T. 2019. L-Cysteine production by metabolically engineered Corynebacterium glutamicum. Appl. Microbiol. Biotechnol. 103: 2609-2619. https://doi.org/10.1007/s00253-019-09663-9
  21. Zha J, Zang Y, Mattozzi M, Plassmeier J, Gupta M, Wu X, et al. 2018. Metabolic engineering of Corynebacterium glutamicum for anthocyanin production. Microb. Cell Fact. 17: 143. https://doi.org/10.1186/s12934-018-0990-z
  22. Kallscheuer N, Marienhagen J. 2018. Corynebacterium glutamicum as platform for the production of hydroxybenzoic acids. Microb. Cell Fact. 17: 70. https://doi.org/10.1186/s12934-018-0923-x
  23. Joo YC, Ko YJ, You SK, Shin SK, Hyeon JE, Musaad AS, et al. 2018. Creating a new pathway in Corynebacterium glutamicum for the production of taurine as a food additive. J. Agric. Food Chem. 66: 13454-13463. https://doi.org/10.1021/acs.jafc.8b05093
  24. Chang Z, Dai W, Mao Y, Cui Z, Wang Z, Chen T. 2020. Engineering Corynebacterium glutamicum for the efficient production of 3-hydroxypropionic acid from a mixture of glucose and acetate via the malonyl-CoA pathway. Catalysts 10: 203 https://doi.org/10.3390/catal10020203
  25. Jojima T, Inui M, Yukawa H. 2013. Biorefinery applications of Corynebacterium gluamicum, pp.149-172. In: Yukawa H, Inui M (eds.), Corynebacterium gluamicum. Microbiology Monographs, Vol. 23. Springer, Berlin, Heidelberg. Germany.
  26. Liao HF, Lin LL, Chien HR, Hsu WH. 2001. Serine 187 is a crucial residue for allosteric regulation of Corynebacterium glutamicum 3-deoxy-Darabino-heptulosonate-7-phosphate synthase. FEMS Microbiol. Lett. 194: 59-64. https://doi.org/10.1016/s0378-1097(00)00507-3
  27. Ger YM, Chen SL, Chiang HJ, Shiuan D. 1994. A single ser-180 mutation desensitizes feedback inhibition of the phenylalanine-sensitive 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate (DAHP) synthetase in Escherichia coli. J. Biochem. 116: 986-990. https://doi.org/10.1093/oxfordjournals.jbchem.a124657
  28. Mears L, Stocks SM, Sin G, Gernaey KV. 2017. A review of control strategies for manipulating the feed rate in fed-batch fermentation processes. J. Biotechnol. 245: 34-46. https://doi.org/10.1016/j.jbiotec.2017.01.008
  29. Kogure T, Inui M. 2018. Recent advances in metabolic engineering of Corynebacterium glutamicum for bioproduction of value-added aromatic chemicals and natural product. Appl. Microbiol. Biotechnol. 102: 8685-8705. https://doi.org/10.1007/s00253-018-9289-6
  30. Sambrook JF, Maniatis T. 1989. Molecular cloning: A laboratory manual. 2nd Ed. Cold Spring Harbor, New York.