과제정보
This study was carried out with the support of the Honam National Institute of Biological Resources (HNIBR202101107).
참고문헌
- Bum, H. M., H. K Kim, N. S Kim, W. Kwon and J. Park. 2020. The complete chloroplast genome of Douinia plicata (Lindb.) Konstant. & Vilnet (Scapaniaceae, Jungermanniales). Mitochondrial DNA Part B Resources 5: 3680-3682. https://doi.org/10.1080/23802359.2020.1832599
- Choi, N. J., H. Xi and J. Park. 2021. A comparative analyses of the complete mitochondrial genomes of fungal endosymbionts in Sogatella furcifera, white-backed planthoppers. International Journal of Genomics 2021: 6652508.
- Choi, Y. G, N. Yun, J. Park, H. Xi, J. Min, Y. Kim and S.-H Oh. 2020. The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations. Mitochondrial DNA Part B Resources 5: 271-272. https://doi.org/10.1080/23802359.2019.1698360
- Crawley, S. S. and K. W. Hilu. 2012. Caryophyllales: Evaluating phylogenetic signal in trnK intron versus matK. Journal of Systematics and Evolution 50: 387-410. https://doi.org/10.1111/j.1759-6831.2012.00197.x
- Darshetkar, A. M, S. Maurya, C. Lee, B. Bazarragchaa, G. Batdelger, A. Janchiv, E. J. Jeong, S. Choi, R. K Choudhary and S.-Y. Kim. 2021. Plastome analysis unveils Inverted Repeat (IR) expansion and positive selection in Sea Lavenders (Limonium, Plumbaginaceae, Limonioideae, Limonieae). PhytoKeys 175: 89-107. https://doi.org/10.3897/phytokeys.175.61054
- Greiner, S., P. Lehwark and R. Bock. 2019. OrganellarGenome-DRAW (OGDRAW) version 1.3. 1: Expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research 47: W59-W64. https://doi.org/10.1093/nar/gkz238
- Huelsenbeck, J. P. and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Katoh, K. and D. M. Standley. 2013. MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30: 772-780. https://doi.org/10.1093/molbev/mst010
- Kim, M., H. Xi and J. Park. 2021. Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors. PLoS ONE 16: e0252181. https://doi.org/10.1371/journal.pone.0252181
- Kim, N.-H., S. H. Sung, J.-D. Heo and E. J. Jeong. 2015. The extract of Limonium tetragonum protected liver against acute alcohol toxicity by enhancing ethanol metabolism and antioxidant enzyme activities. Natural Product Sciences 21: 54-58.
- Kim, N.-H., J.-D. Heo, T. B. Kim, J.-R. Rho, M. H. Yang and E. J Jeong. 2016. Protective effects of ethyl acetate soluble fraction of Limonium tetragonum on diethylnitrosamine-induced liver fibrosis in rats. Biological and Pharmaceutical Bulletin 39: 1022-1028. https://doi.org/10.1248/bpb.b15-01047
- Kim, Y., K.-I. Heo, S. Lee, and J. Park. 2018. Complete chloroplast genome sequence of the Pseudostellaria longipedicellata S. Lee, K. Heo & S.C. Kim (Caryophyllaceae). Mitochondrial DNA Part B Resources 3: 1296-1297. https://doi.org/10.1080/23802359.2018.1535840
- Kim, Y., Y Chung and J. Park. 2019a. The complete chloroplast genome sequence of Dysphania pumilio (R. Br.) Mosyakin & Clemants (Amaranthaceae). Mitochondrial DNA Part B Resources 4: 403-404. https://doi.org/10.1080/23802359.2018.1547156
- Kim, Y., Y. J. Oh, K. Y. Han, G. H. Kim, J. Ko and J. Park. 2019b. The complete chloroplast genome sequence of Hibiscus syriacus L. 'Mamonde' (Malvaceae). Mitochondrial DNA Part B Resources 4: 558-559. https://doi.org/10.1080/23802359.2018.1553526
- Kim, Y, J. Park and Y. Chung. 2019c. Comparative analysis of chloroplast genome of Dysphania ambrosioides (L.) Mosyakin & Clemants understanding phylogenetic relationship in genus Dysphania R. Br. Korean Journal of Plant Resources 32: 644-668.
- Kim, Y., J.-S. Yi, J. Min, H. Xi, D. Y. Kim, J. Son, J. Park and J.-I. Jeon. 2019d. The complete chloroplast genome of Aconitum coreanum (H. Lev.) Rapaics (Ranunculaceae). Mitochondrial DNA Part B Resources 4: 3404-3406. https://doi.org/10.1080/23802359.2019.1674213
- Kong, C.-S., Y. R. Um, J.-I. Lee, Y. A. Kim, J.-S. Lee and Y. Seo. 2008. Inhibition effects of extracts and its solvent fractions isolated from Limonium tetragonum on growth of human cancer cells. Korean Journal of Biotechnology and Bioengineering 23: 177-182.
- Koutroumpa, K., S. Theodoridis, B. H. Warren, A. Jimenez, F. Celep, M. Dogan, M. M. Romeiras, A. Santos-Guerra, J. M. Fernandez-Palacios, J. Caujape-Castells, M. Moura, M. M. de Sequeira and E. Conti. 2018. An expanded molecular phylogeny of Plumbaginaceae, with emphasis on Limonium (sea lavenders): Taxonomic implications and biogeographic considerations. Ecology and Evolution 8: 12397-12424. https://doi.org/10.1002/ece3.4553
- Kubitzki, K. 1993. Plumbaginaceae. In The Families and Genera of Vascular Plants. Vol. 2. Kubitzki, K., J. Rohwer and V. Bittrich (eds.), Springer-Verlag, Berlin. Pp. 523-530.
- Lee, J. I., C.-S. Kong, M. E. Jung, J. W. Hong, S. Y. Lim and Y. Seo. 2011. Antioxidant activity of the halophyte Limonium tetragonum and its major active components. Biotechnology and Bioprocess Engineering 16: 992. https://doi.org/10.1007/s12257-011-0213-5
- Lee, Y.-E, Y. Lee Y and S. Kim. 2021. A report of the second chloroplast genome sequence in Veronica nakaiana (Plantaginaceae), an endemic species in Korea. Korean Journal of Plant Taxonomy 51: 109-114. https://doi.org/10.11110/kjpt.2021.51.1.109
- Li, H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint at https://arxiv.org/abs/1303.3997.
- Li, H., B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis and R. Durbin. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079. https://doi.org/10.1093/bioinformatics/btp352
- Lledo, M. D., M. B. Crespo, M. F. Fay and M. W. Chase. 2005. Molecular phylogenetics of Limonium and related genera (Plumbaginaceae): Biogeographical and systematic implications. American Journal of Botany 92: 1189-1198. https://doi.org/10.3732/ajb.92.7.1189
- Malekmohammadi, M., H. Akhani and T. Borsch. 2017. Phylogenetic relationships of Limonium (Plumbaginaceae) inferred from multiple chloroplast and nuclear loci. Taxon 66: 1128-1146. https://doi.org/10.12705/665.8
- Min, J., W. Kwon, H. Xi and J. Park. 2019a. The complete chloroplast genome of Leucobryum juniperoideum (brid.) C. Mull. (Leucobryaceae, Bryophyta). Mitochondrial DNA Part B Resources 4: 2962-2963. https://doi.org/10.1080/23802359.2019.1661301
- Min, J., J. Park, Y. Kim and W. Kwon. 2019b. The complete chloroplast genome of Artemisia fukudo Makino (Asteraceae): Providing insight of intraspecies variations. Mitochondrial DNA Part B Resources 4: 1510-1512. https://doi.org/10.1080/23802359.2019.1601044
- Morgan, E., and K, Funnell. 2018. Limonium. In Ornamental Crops. Van Huylenbroeck, J. (ed.), Springer, Cham. Pp. 513-527.
- Nguyen, L.-T., H. A. Schmidt, A. Von Haeseler and B. Q. Minh. 2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32: 268-274. https://doi.org/10.1093/molbev/msu300
- Ohwi, J. 1965. Flora of Japan (rev. ed.). Shibundo Co. Ltd., Tokyo, 344 pp.
- Park, C.-W.. 2007. The Genera of Vascular Plants of Korea. Flora of Korea Editorial Committee. Academy Publishing Co, Seoul, 1482 pp.
- Park, J. and S.-H Oh. 2020. A second complete chloroplast genome sequence of Fagus multinervis Nakai (Fagaceae): Intraspecific variations on chloroplast genome. Mitochondrial DNA Part B Resources 5: 1868-1869. https://doi.org/10.1080/23802359.2020.1752837
- Park, J., J.-H. An, Y. Kim, D. Kim, B.-G. Yang and T. Kim. 2020a. Database of National Species List of Korea: The taxonomical systematics platform for managing scientific names of Korean native species. Journal of Species Research 9: 233-246. https://doi.org/10.12651/JSR.2020.9.3.233
- Park, J., J. Min, Y. Kim and Y. Chung. 2021a. The comparative analyses of six complete chloroplast genomes of morphologically diverse Chenopodium album L. (Amaranthaceae) collected in Korea. International Journal of Genomics 2021: 6643444.
- Park, J., S. Park, T. Jang, G. Kim and J.-H. Park. 2021b. The complete chloroplast genome of Abeliophyllum distichum f. lilacinum Nakai (Oleaceae) from the Chungbuk Province, Korea. Mitochondrial DNA Part B Resources 6: 1754-1756. https://doi.org/10.1080/23802359.2021.1931513
- Park, J., H. Xi, J. Son, H.T. Shin, H. Kang and S. Park. 2021c. The complete chloroplast genome of Castanopsis sieboldii (Makino) Hatus (Fagaceae). Mitochondrial DNA Part B Resources 6: 2743-2745. https://doi.org/10.1080/23802359.2021.1966339
- Park, J., H. Xi and Y. Kim. 2021d. The mitochondrial genome of Arabidopsis thaliana (Brassicaceae) isolated in Korea. Korean Journal of Plant Taxonomy. 51: 176-180. https://doi.org/10.11110/kjpt.2021.51.2.176
- Yang, M. H., N.-H. Kim, J.-D. Heo, S. H. Sung and E. J. Jeong. 2014. Hepatoprotective effects of Limonium tetragonum, edible medicinal halophyte growing near seashores. Pharmacognosy Magazine 10: S563-S568.
- Yao, G., J.-J. Jin, H.-T. Li, J.-B. Yang, V. S. Mandala, M. Croley, R. Mostow, N. A. Douglas, M. W. Chase, M. J. M. Christenhusz, D. E. Soltis, P. S. Soltis, S. A. Smith, S. F. Brockington, M. J. Moore, T.-S. Yi and D.-Z. Li. 2019. Plastid phylogenomic insights into the evolution of Caryophyllales. Molecular Phylogenetics and Evolution 134: 74-86. https://doi.org/10.1016/j.ympev.2018.12.023
- Zerbino, D. R. and E. Birney. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Research 18: 821-829. https://doi.org/10.1101/gr.074492.107
- Zhao, Q.-Y., Y. Wang Y, Y.-M. Kong, D. Luo, X. Li and P. Hao. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: A comparative study. BMC Bioinformatics 12: S2.