Mycobiology

The Korean Society of Mycology (한국균학회)
권호 표지
DOI QR코드

DOI QR Code

Draft Genome Sequence of the White-Rot Fungus Schizophyllum Commune IUM1114-SS01

  • Kim, Da-Woon (Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University) ;
  • Nam, Junhyeok (Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University) ;
  • Nguyen, Ha Thi Kim (Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University) ;
  • Lee, Jiwon (Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University) ;
  • Choi, Yongjun (Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University) ;
  • Choi, Jaehyuk (Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University)
  • Received : 2020.08.30
  • Accepted : 2020.10.25
  • Published : 2021.02.28
Download PDF
⟨ Previous Next ⟩

Abstract

The monokaryotic strain, Schizophyllum commune strain IUM1114-SS01, was generated from a basidiospore of dikaryotic parental strain IUM1114. It even showed the decolorizing activities for several textile dyes much better than its parental strain. Based on the results of a single-molecule real-time sequencing technology, we present the draft genome of S. commune IUM1114-SS01, comprising 41.1 Mb with GC contents of the genome were 57.44%. Among 13,380 protein-coding genes, 534 genes are carbon hydrate-active enzyme coding genes.

Keywords

References

  1. Ohm RA, de Jong JF, Lugones LG, et al. Genome sequence of the model mushroom Schizophyllum commune. Nat Biotechnol. 2010; 28(9):957-963. https://doi.org/10.1038/nbt.1643
  2. Hatakka A. Lignin-modifying enzymes from selected white-rot fungi: production and role from in lignin degradation. FEMS Microbiol Rev. 1994; 13(2-3):125-135. https://doi.org/10.1016/0168-6445(94)90076-0
  3. Dwivedi P, Tomar RS. Bioremediation of textile effluent for degradation and decolourization of synthetic dyes: a review. Int J Curr Res Life Sci. 2018;7(04):1948-1951.
  4. Choi Y, Nguyen Y, Lee TS, et al. Genetic diversity and dye-decolorizing spectrum of Schizophyllum commune population. J Microbiol Biotechnol. 2020;30(10):1525-1535. https://doi.org/10.4014/jmb.2006.06049
  5. Cantarel BL, Korf I, Robb SMC, et al. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res. 2008;18(1):188-196. https://doi.org/10.1101/gr.6743907
  6. Camacho C, Coulouris G, Avagyan V, et al. BLAST+: architecture and applications. BMC Bioinformatics. 2009;10(1):421. https://doi.org/10.1186/1471-2105-10-421
  7. Jones P, Binns D, Chang H-Y, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics. 2014;30(9):1236-1240. https://doi.org/10.1093/bioinformatics/btu031
  8. Zhang H, Yohe T, Huang L, et al. dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 2018; 46(W1):W95-W101. https://doi.org/10.1093/nar/gky418
  9. Yin Y, Mao X, Yang J, et al. dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 2012; 40(Web Server issue):W445-W451. https://doi.org/10.1093/nar/gks479
  10. Busk PK, Pilgaard B, Lezyk MJ, et al. Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function. BMC Bioinformatics. 2017;18(1):214. https://doi.org/10.1186/s12859-017-1625-9
  11. Morin E, Kohler A, Baker AR, et al. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc Natl Acad Sci U S A. 2012;109(43):17501-17506. https://doi.org/10.1073/pnas.1206847109
  12. Stajich JE, Wilke SK, Ahren D, et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc Natl Acad Sci U S A. 2010;107(26):11889-11894. https://doi.org/10.1073/pnas.1003391107
  13. Martin F, Aerts A, Ahren D, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 2008;452(7183):88-92. https://doi.org/10.1038/nature06556
  14. Riley R, Salamov AA, Brown DW, et al. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proc Natl Acad Sci U S A. 2014;111(27):9923-9928. https://doi.org/10.1073/pnas.1400592111

Cited by

  1. Fungal lignocellulolytic enzymes and lignocellulose: A critical review on their contribution to multiproduct biorefinery and global biofuel research vol.193, pp.no.pb, 2021, https://doi.org/10.1016/j.ijbiomac.2021.11.063