References
- Stewart S, Godden S, Bey R, et al. Preventing bacterial contamination and proliferation during the harvest, storage, and feeding of fresh bovine colostrum. J Dairy Sci 2005;88:2571-8. https://doi.org/10.3168/jds.S0022-0302(05)72933-7
- Erickson PS, Schauff DJ, Murphy MR. Diet digestibility and growth of Holstein calves fed acidified milk replacers containing soy protein concentrate. J Dairy Sci 1989;72:1528-33. https://doi.org/10.3168/jds.S0022-0302(89)79263-8
- Todd CG, Millman ST, Leslie KE, Anderson NG, Sargeant JM, DeVries TJ. Effects of milk replacer acidification and free-access feeding on early life feeding, oral, and lying behavior of dairy calves. J Dairy Sci 2018;101:8236-47. https://doi.org/10.3168/jds.2018-14487
- Raeth-Knight M, Chester-Jones H, Hayes S, et al. Impact of conventional or intensive milk replacer programs on Holstein heifer performance through six months of age and during first lactation. J Dairy Sci 2009;92:799-809. https://doi.org/10.3168/jds.2008-1470
- Todd CG, Leslie KE, Millman ST, et al. Clinical trial on the effects of a free-access acidified milk replacer feeding program on the health and growth of dairy replacement heifers and veal calves. J Dairy Sci 2017;100:713-25. https://doi.org/10.3168/jds.2016-11401
- Hill TM, BatemanII HG, Aldrich JM, Quigley JD, Schlotterbeck RL. Evaluation of ad libitum acidified milk replacer programs for dairy calves. J Dairy Sci 2013;96:3153-62. https://doi.org/10.3168/jds.2012-6132
- Woodford ST, Whetstone HD, Murphy MR, Davis CL. Abomasal pH, nutrient digestibility, and growth of holstein bull calves fed acidified milk replacer. J Dairy Sci 1987;70:888-91. https://doi.org/10.3168/jds.S0022-0302(87)80088-7
- Jaster EH, McCoy GC, Tomkins T, Davis CL. Feeding acidified or sweet milk replacer to dairy calves. J Dairy Sci 1990;73:3563-6. https://doi.org/10.3168/jds.S0022-0302(90)79056-X
- Nocek JE, Braund DG. Performance, health, and postweaning growth on calves fed cold, acidified milk replacer ad libitum. J Dairy Sci 1986;69:1871-83. https://doi.org/10.3168/jds.S0022-0302(86)80613-0
- Thickett WS, Cuthbert NH, Brigstocke TDA, Lindeman MA, Wilson PN. A note on the performance and management of calves reared on cold acidified milk replacer fed, ad libitum. Anim Sci 1983;36:147-50. https://doi.org/10.1017/S0003356 100040058
- Todd C, Leslie KE, Millman ST, et al. Milk replacer acidification for free-access feeding: effects on the performance and health of veal calves. Open J Anim Sci 2016;6:234-46. https://doi.org/10.4236/ojas.2016.63029
- Yanar M, Olcay G, BahrI B, Jale M. Effects of feeding acidified milk replacer on the growth, health and behavioural characteristics of holstein friesian calves. Turk J Vet Anim Sci 2006;30:235-41.
- Daniels LB, Hall JR, Hornsby OR, Collins JA. Feeding naturally fermented, cultured, and direct acidified colostrum to dairy calves. J Dairy Sci 1977;60:992-6. https://doi.org/10.3168/jds.S0022-0302(77)83976-3
- Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ. Geobacter sulfurreducens sp. nov., a hydrogen-and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl Environ Microbiol 1994;60:3752-9. https://doi.org/10.1128/aem.60.10.3752-3759.1994
- Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 2013;10:996-8. https://doi.org/10.1038/nmeth.2604
- Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007;73:5261-7. https://doi.org/10.1128/AEM.00062-07
- Quast C, Pruesse E, Yilmaz P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 2013;41:D590-6. https://doi.org/10.1093/nar/gks1219
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004;32:1792-7. https://doi.org/10.1093/nar/gkh340
- White JR, Nagarajan N, Pop M. Statistical methods for detecting differentially abundant features in clinical metagenomic samples. Plos Comput Biol 2009;5:e1000352. https://doi.org/10.1371/journal.pcbi.1000352
- Zou Y, Wang Y, Deng Y, Cao Z, Li S, Wang J. Effects of feeding untreated, pasteurized and acidified waste milk and bunk tank milk on the performance, serum metabolic profiles, immunity, and intestinal development in Holstein calves. J Anim Sci Biotechnol 2017;8:53. https://doi.org/10.1186/s40104-017-0182-4
- Mora D, Fortina MG, Parini C, et al. Genetic diversity and technological properties of Streptococcus thermophilus strains isolated from dairy products. J Appl Microbiol 2002;93:278-87. https://doi.org/10.1046/j.1365-2672.2002.01696.x
- Kotz CM, Peterson LR, Moody JA, Savaiano DA, Levitt MD. In vitro antibacterial effect of yogurt on Escherichia coli. Digest Dis Sci 1990;35:630-7. https://doi.org/10.1007/BF01540412
- Raso J, Palop A, Pagan R, Condon S. Inactivation of Bacillus subtilis spores by combining ultrasonic waves under pressure and mild heat treatment. J Appl Microbiol 1998;85:849-54. https://doi.org/10.1046/j.1365-2672.1998.00593.x
- Hand MS, Hunt E, Phillips RW. Milk replacers for the neonatal calf Vet Clin North Am Food Anim Pract 1985;1:589-608. https://doi.org/10.1016/S0749-0720(15)31305-0
- Claesson MJ, Jeffery IB, Conde S, et al. Gut microbiota composition correlates with diet and health in the elderly. Nature 2012;488:178-84. https://doi.org/10.1038/nature11319
- Li RW, Connor EE, Li C, Baldwin RL, Sparks ME. Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ Microbiol 2012;14:129-39. https://doi.org/10.1111/j.1462-2920.2011.02543.x
- Mao S, Zhang M, Liu J, Zhu W. Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function. Sci Rep 2015;5:16116. https://doi.org/10.1038/srep16116
- Deng YF, Wang YJ, Zou Y, et al. Influence of dairy by-product waste milk on the microbiomes of different gastrointestinal tract components in pre-weaned dairy calves. Sci Rep 2017;7:42689. https://doi.org/10.1038/srep42689
- Van der Waaij D, Berghuis-de Vries JM, Lekkerkerk-Van der Wees JEC. Colonization resistance of the digestive tract in conventional and antibiotic-treated mice. Epidemiol Infect 1971;69:405-11. https://doi.org/10.1017/S0022172400021653
- Heyman M, Menard S. Probiotic microorganisms: how they affect intestinal pathophysiology. Cell Mol Life Sci 2002;59;1151-65. https://doi.org/10.1007/s00018-002-8494-7
- Burton KJ, Rosikiewicz M, Pimentel G, et al. Probiotic yogurt and acidified milk similarly reduce postprandial inflammation and both alter the gut microbiota of healthy, young men. Br J Nutr 2017;117;1312-22. https://doi.org/10.1017/S0007114517000885
- Yin X, Yan Y, Kim EB, Lee B, Marco ML. Effect of milk and milk containing Lactobacillus casei on the intestinal microbiota of mice. J Dairy Sci 2014;97;2049-55. https://doi.org/10.3168/jds.2013-7477
- Backhed F, Ding H, Wang T, et al. The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci USA 2004;101:15718-23. https://doi.org/10.1073/pnas.0407076101
- Biddle A, Stewart L, Blanchard J, Leschine S. Untangling the genetic basis of fibrolytic specialization by Lachnospiraceae and Ruminococcaceae in diverse gut communities. Diversity 2013;5:627-40. https://doi.org/10.3390/d5030627
- Yang X, Twitchell E, Li G, et al. High protective efficacy of rice bran against human rotavirus diarrhea via enhancing probiotic growth, gut barrier function, and innate immunity. Sci Rep 2015;5:15004. https://doi.org/10.1038/srep15004
- Wu W, Lv L, Shi D, et al. Protective effect of Akkermansia muciniphila against immune-mediated liver injury in a mouse model. Front Microbiol 2017;8:1804. https://doi.org/10.3389/fmicb.2017.01804