DOI QR코드

DOI QR Code

Detection and Phylogenetic Analysis of Viruses Linked with Fig Mosaic Disease in Seventeen Fig Cultivars in Palestine

  • Received : 2020.01.09
  • Accepted : 2020.04.21
  • Published : 2020.06.01

Abstract

Fig mosaic is a viral disease (FMD) that spreads in Palestinian common fig (Ficus carica L.) orchards. Recognizing the economic value of fig plants and the harmful nature of FMD, the disease poses a significant threat to the economy of the fig production in Palestine. We applied the reverse transcription and amplification (RT-PCR) and PCR technique to leaf samples of 77 trees and 14 seedlings of 17 fig cultivars. The samples were collected from orchards in the main fig-growing provinces of the Palestinian West Bank, to assess the prevalence of viruses associated with FMD, and confirm a possible link of symptoms with viruses detected. Four viruses were detected: Fig mosaic virus (FMV), Fig badnavirus-1 (FBV-1), Fig leaf mottle-associated virus 2 (FLMaV-2), and Fig fleck-associated virus (FFkaV). FMV and FBV-1 were found in all tested fig plants (100%), while FLMaV-2 and FFkaV were detected in 61.5% and 33% of the fig samples, respectively. The high incidence of FBV-1 in the newly propagated symptomatic and symptomless seedlings from different cultivars may be an indication that FBV-1 is integrated into the genome of the fig in a cultivar nondiscriminatory manner. Very weak or no association was detected between FMD symptoms severity in the 17 Palestinian fig cultivars with the various viruses' combinations observed (i.e., number of the viruses infecting the plant). These results support the notion that FMD symptom severity expression is likely to be controlled by a combination of FMV infection, cultivars, and environmental factors, rather than the number of viruses infecting the plant.

Keywords

References

  1. Aldhebiani, A. Y., Elbeshehy E. K. F., Baeshen, A. A. and Elbeaino, T. 2015. Four viruses infecting figs in Western Saudi Arabia. Phytopathol. Mediterr. 54:497-503.
  2. Ale-Agha, G. N. and Rakhshandehroo, F. 2014. Detection and molecular variability of fig fleck-associated virus and fig cryptic virus in Iran. J. Phytopathol. 162:417-425. https://doi.org/10.1111/jph.12204
  3. Ali-Shtayeh, M. S., Jabi, F. F. and Hamad, A. K. 1991. The fig tree. Rural Research Centre, An-Najah National University, Nablus, Palestine. 137 pp. (in Arabic).
  4. Ali-Shtayeh, M. S., Jamous, R. M., Abu Zaitoun, S. Y., Mallah, O. B. and Mubaslat, A. K. 2014. Genetic diversity of the Palestinian fig (Ficus carica L.) collection by pomological traits and RAPD markers. Am. J. Plant Sci. 5:1139-1155. https://doi.org/10.4236/ajps.2014.59127
  5. Alkowni, R., Chiumenti, M., Minafra, A. and Martelli, G. P. 2015. A survey for fig-infecting viruses in Palestine. J. Plant Pathol. 2:383-386.
  6. Caglar, B. K., Fidan, H., Guldur, M. E. and Elbeaino, T. 2011. The prevalence of three viruses infecting fig in Southern Turkey. J. Phytopathol. 159:181-183. https://doi.org/10.1111/j.1439-0434.2010.01749.x
  7. Delic, D., Perovic, T., Hrncic, S., Lolic, B., Duric, G. and Elbeaino, T. 2017. Detection and phylogenetic analyses of figinfecting viruses in Bosnia and Herzegovina and Montenegro. Phytopathol. Mediterr. 56:470-478.
  8. El Air, M., Mahfoudhi, N., Digiaro, M., Dhouibi, M. H. and Elbeaino, T. 2015. Incidence and distribution of viruses in Tunisian fig orchards. J. Plant Pathol. 97:327-331.
  9. Elbeaino, T., Abou Kubaa, R., Ismaeil, F., Mando, J. and Digiaro, M. 2012a. Viruses and hop stunt viroid of fig trees in Syria. J. Plant Pathol. 94:687-691.
  10. Elbeaino, T., Choueiri, E., Hobeika, C. and Digiaro, M. 2007. Presence of Fig leaf mottle-associated virus 1 and 2 in Lebanese fig orchards. J. Plant Pathol. 89:409-411.
  11. Elbeaino, T., Digiaro, M., Alabdullah, A., De Stradis, A., Minafra, A., Mielke, N., Castellano, M. A. and Martelli, G. P. 2009a. A multipartite single-stranded negative-sense RNA virus is the putative agent of fig mosaic disease. J. Gen. Virol. 90:1281-1288. https://doi.org/10.1099/vir.0.008649-0
  12. Elbeaino, T., Digiaro, M., De Stradis, A. and Martelli, G. P. 2006. Partial characterisation of a closterovirus associated with a chlorotic mottling of fig. J. Plant Pathol. 88:187-192.
  13. Elbeaino, T., Digiaro, M., Heinoun, K., De Stradis, A. and Martelli, G. P. 2010. Fig mild mottle-associated virus, a novel closterovirus infecting fig. J. Plant Pathol. 92:165-172.
  14. Elbeaino, T., Digiaro, M. and Martelli, G. P. 2011a. Complete sequence of Fig fleck-associated virus, a novel member of the family Tymoviridae. Virus Res. 161:198-202. https://doi.org/10.1016/j.virusres.2011.07.022
  15. Elbeaino, T., Kiyi, H., Boutarfa, R., Minafra, A., Martelli, G. P. and Digiaro, M. 2014. Phylogenetic and recombination analysis of the homing protein domain of grapevine fanleaf virus (GFLV) isolates associated with 'yellow mosaic' and 'infectious malformation' syndromes in grapevine. Arch. Virol. 159:2757-2764. https://doi.org/10.1007/s00705-014-2138-8
  16. Elbeaino, T., Kubaa, R. A., Digiaro, M., Minafra, A. and Martelli, G. P. 2011b. The complete nucleotide sequence and genome organization of Fig cryptic virus, a novel bipartite dsRNA virus infecting fig, widely distributed in the Mediterranean basin. Virus Genes 42:415-421. https://doi.org/10.1007/s11262-011-0581-0
  17. Elbeaino, T., Kubaa, R. A., Ismaeil, F., Mando, J. and Digiaro, M. 2012b. Viruses and Hop stunt viroid of fig trees in Syria. J. Plant Pathol. 94:687-691.
  18. Elbeaino, T., Mortada, C., Digiaro, M. and Choueiri, E. 2012c. Survey on fig viruses in Lebanon. Acta Hortic. 940:665-668. https://doi.org/10.17660/actahortic.2012.940.91
  19. Elbeaino, T., Nahdi, S., Digiaro, M., Alabdullah, A. and Martelli, G. P. 2009b. Detection of FLMaV-1 and FLMaV-2 in the Mediterranean region and study on sequence variation of the hsp70 gene. J. Plant Pathol. 91:425-431.
  20. Elbeshehy, E. K. F. and Elbeaino, T. 2011. Viruses infecting figs in Egypt. Phytopathol. Mediterr. 50:327-332.
  21. Fayez, K. A. and Mahmoud, S. Y. 2011. Detection and partial characterization of a putative closterovirus affecting Ficus carica: molecular, ultrastructural and physiological aspects of infected leaves. Acta Physiol. Plant 33:2187-2198. https://doi.org/10.1007/s11738-011-0758-0
  22. Flock, R. A. and Wallace, J. M. 1955. Transmission of fig mosaic by the eriophyid mite Aceria ficus. Phytopathology 45:52-54.
  23. Foissac, X., Svanella-Dumas, L., Dulucq, M. J., Candresse, T. and Gentit, P. 2001. Polyvalent detection of fruit tree tricho, capillo and foveaviruses by nested RT-PCR using degenerated and inosine containing primers (PDO RT-PCR). Acta Hortic. 550:37-44. https://doi.org/10.17660/actahortic.2001.550.2
  24. Food and Agriculture Organization of the United Nations. 2009. The FAO Statistical Database-Agriculture. URL http://faostat3.fao.org/faostat-gateway/go/to/download/Q/QC/E [9 January 2020].
  25. Gattoni, G., Minafra, A., Castellano, M. A., De Stradis, A., Boscia, D., Elbeaino, T., Digiaro, M. and Martelli, G. P. 2009. Some properties of fig latent virus 1, a new member of the family Flexiviridae. J. Plant Pathol. 91:555-564.
  26. Goor, A. 1955. The fig. Agricultural Publication Section, Department of Horticulture, Department of Agriculture Education, Tel Aviv, Israel. 70 pp. (in Hebrew).
  27. Jones, A. T., McGavin, W. J., Geering, A. D. W. and Lockheart, B. E. L. 2002. Identification of Rubus yellow net virus as a distinct badnavirus and its detection by PCR in Rubus species and in aphids. Ann. Appl. Biol. 141:1-10. https://doi.org/10.1111/j.1744-7348.2002.tb00189.x
  28. Laney, A. G., Hassan, M. and Tzanetakis, I. E. 2012. An integrated badnavirus is prevalent in fig germplasm. Phytopathology 102:1182-1189. https://doi.org/10.1094/PHYTO-12-11-0351
  29. Latinovic, J., Radisek, S., Bajceta, M., Jakse, J. and Latinovic, N. 2019. Viruses associated with fig mosaic disease in different fig varieties in Montenegro. Plant Pathol. J. 35:32-40. https://doi.org/10.5423/PPJ.OA.04.2018.0058
  30. Martin, R. R., MacFarlane, S., Sabanadzovic, S., Quito, D., Poudel, B. and Tzanetakis, I. E. 2013. Viruses and virus diseases of Rubus. Plant Dis. 97:168-182. https://doi.org/10.1094/PDIS-04-12-0362-FE
  31. Mijit, M., He, Z., Hong, J., Lu, M.-G., Li, S.-F. and Zhang, Z.-X. 2017. Analysis of fig tree virus type and distribution in China. J. Integr. Agric. 16:1417-1421. https://doi.org/10.1016/s2095-3119(16)61551-4
  32. Minafra, A., Chiumenti, M., Elbeaino, T., Digiaro, M., Bottalico, G., Pantaleo, V. and Martelli, G. P. 2012. Occurrence of fig badnavirus 1 in fig trees from different countries and in symptomless seedlings. J. Plant Pathol. 94(4 Suppl):S4.105.
  33. Nahdi, S., Elbeaino, T., Digiaro, M. and Martelli, G. P. 2006. First record of Fig leaf mottle-associated virus 1 in Tunisia. J. Plant Pathol. 88(3 Suppl):S70.
  34. Norozian, E., Rakhshandehroo, F. and Shams-Bakhsh, M. 2014. Presence of fig leaf mottle-associated virus 3 in an Iranian fig orchard. J. Plant Pathol. 96(4 Suppl):S4.131.
  35. Pethybridge, S. J. and Nelson, S. C. 2015. Leaf doctor: a new portable application for quantifying plant disease severity. Plant Dis. 99:1310-1316. https://doi.org/10.1094/PDIS-03-15-0319-RE
  36. Sambrook, J., Fritsch, E. F. and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold spring harbor laboratory, Cold Spring Harbor, NY, USA. 1626 pp.
  37. Shahmirzaie, M., Rakhshandehroo, F., Zamanizadeh, H. R. and Elbeaino, T. 2012. Current status of fig mosaic disease in Iran. J. Phytopathol. 160:324-330. https://doi.org/10.1111/j.1439-0434.2012.01908.x
  38. Susaimuthu, J., Tzanetakis, I. E., Gergerich, R. C. and Martin, R. R. 2008. A member of a new genus in the Potyviridae infects Rubus. Virus Res. 131:145-151. https://doi.org/10.1016/j.virusres.2007.09.001
  39. Tzanetakis, I. E., Halgren, A., Mosier, N. and Martin, R. R. 2007. Identification and characterization of Raspberry mottle virus, a novel member of the Closteroviridae. Virus Res. 127:26-33. https://doi.org/10.1016/j.virusres.2007.03.010
  40. Tzanetakis, I. E., Laney, A. G., Keller, K. E. and Martin, R. R. 2010. New viruses found in fig exhibiting mosaic symptoms. In: 21st International Conference on Virus and other Graft Transmissible Deseases of Fruit Crops, eds. by W. Jelkmann, G. Krczal and F. Feldmann, pp. 79-82. Julius Kuhn-Institut, Berlin, Germany.
  41. Walia, J. J., Salem, N. M. and Falk, B. W. 2009. Partial sequence and survey analysis identify a multipartite, negative-sense RNA virus associated with fig mosaic. Plant Dis. 93:4-10. https://doi.org/10.1094/PDIS-93-1-0004
  42. Wang, Q. C. and Valkonen, J. P. T. 2008. Elimination of two viruses which interact synergistically from sweetpotato by shoot tip culture and cryotherapy. J. Virol. Methods 154:135-145. https://doi.org/10.1016/j.jviromet.2008.08.006
  43. Yahyaoui, E., Frasheri, D., Germana, M. A., Burruano, S., D'Onghia, A. M. and Elbeaino, T. 2017. Viruses infecting different Mediterranean genotypes of Ficus carica and their distribution in different plant organs. Acta Hortic. 1173:273-278. https://doi.org/10.17660/actahortic.2017.1173.47
  44. Yorganci, S. 2016. Determination of some vectors for fig mosaic disease agents transmission. MSc thesis. Adnan Menderes Universitesi, Aydin, Turkey (in Turkish).
  45. Zeven, A. C. 1998. Landraces: a review of definitions and classifications. Euphytica 104:127-139. https://doi.org/10.1023/A:1018683119237