References
- Val-Moraes SP, Pedrinho EA, Lemos EG, et al. Molecular identification of fungal communities in a soil cultivated with vegetables and soil suppressiveness to Rhizoctonia solani. Appl Environ Soil Sci. 2013;1:1-7.
- Sterkenburg E, Bahr A, Durling M, et al. Changes in fungal communities along a boreal forest soil fertility gradient. New Phytol. 2015;207(4):1145-1158. https://doi.org/10.1111/nph.13426
- Jeffries P, Gianinazzi S, Perotto S, et al. The contribution of arbuscular mycorrhizal fungi in sustainable maintenance of plant health and soil fertility. Biol Fertil Soils. 2003;37:1-16. https://doi.org/10.1007/s00374-002-0546-5
- Tedersoo L, Bahram M, Polme S, et al. Global diversity and geography of soil fungi. Science. 2014;346(6213):1256688. https://doi.org/10.1126/science.1256688
- Tardy V, Chabbi A, Charrier X, et al. Land use history shifts in situ fungal and bacterial successions following wheat straw input into the soil. PLoS One. 2015;10(6):e0130672-17. https://doi.org/10.1371/journal.pone.0130672
- Requena N, Perez-Solis E, Azcon-Aguilar C, et al. Management of indigenous plant-microbe symbioses aids restoration of desertified ecosystems. Appl Environ Micorbiol. 2001;67(2):495-498. https://doi.org/10.1128/AEM.67.2.495-498.2001
- Eswaran H, Lal R, Reich PF. Land degradation. An overview conference on land degradation and desertification. Proceedings 2nd International Conference on Land Degradation and Desertification; Khon Kaen, Thailand; New Dehli, India: Oxford Press; 2001.
- Rowell D. Soil science: methods and applications. 1st ed. Reading (UK): Department of Soil Science, University of Reading; 2014.
- Aktar W, Sengupta D, Chowdhury A. Impact of pesticides use in agriculture: their benefits and hazards. Interdisc Toxicol. 2009;2(1):1-12. https://doi.org/10.2478/v10102-009-0001-7
- Siles J, Margesin R. Abundance and diversity of bacterial, archaeal, and fungal communities along an altitudinal gradient in alpine forest soils: what are the driving factors? Microb Ecol. 2016;72(1):207-220. https://doi.org/10.1007/s00248-016-0748-2
- Ferrol N, Calvente R, Cano C, et al. Analysing arbuscular mycorrhizal fungal diversity in shrubassociated resource islands from a desertification threatened semiarid Mediterranean ecosystem. Appl Soil Ecol. 2004;25(2):123-133. https://doi.org/10.1016/j.apsoil.2003.08.006
- Mithal V, Garg A, Boriah S, et al. Monitoring global forest cover using data mining. ACM Trans Intell Syst Technol. 2011;36:1-23. https://doi.org/10.1145/1989734.1989740
- Chakravarthy A, Sridhara S. Economic and ecological significance of arthropods in diversified ecosystems: sustaining regulatory mechanisms. Berlin, Germany: Springer; 2016.
- Gibbs H, Salmon J. Mapping the world's degraded lands. Appl Geogr. 2015;57:12-21. https://doi.org/10.1016/j.apgeog.2014.11.024
- Grundmann G. Spatial scales of soil bacterial diversity the size of a clone. FEMS Microb Ecol. 2004;48(2):119-127. https://doi.org/10.1016/j.femsec.2004.01.010
- Buee M, Reich M, Murat C, et al. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol. 2009;184(2):449-456. https://doi.org/10.1111/j.1469-8137.2009.03003.x
- Hamza MA, Anderson WK. Soil compaction in cropping systems a review of the nature, causes and possible solutions. Soil Tillage Res. 2005;82(2):121-145. https://doi.org/10.1016/j.still.2004.08.009
- Lauber C, Strickland M, Bradford M, et al. The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biol Biochem. 2008;40(9):2407-2415. https://doi.org/10.1016/j.soilbio.2008.05.021
- Christ S, Wubet T, Buscot F. Soil fungal communities along land use gradients of three German biodiversity exploratories: a comparison of classical cloning and sequencing approach with high throughput sequencing. Proceedings of the 19th World Congress of Soil Science: Soil Solutions for a Changing World, Brisbane, Australia; 1-6 August 2010. Symposium 2.3.1 The soil-root interface 2010. p. 131-133.
- Fischer M, Bossdorf O, Gockel S, et al. Implementing large-scale and long-term functional biodiversity research: the biodiversity exploratories. Basic Appl Ecol. 2010;11(6):473-485. https://doi.org/10.1016/j.baae.2010.07.009
- Goldmann K, Schoning I, Buscot F, et al. Forest management type influences diversity and community composition of soil fungi across temperate forest ecosystems. Front Microbiol. 2015;24:6.
- Wubet T, Christ S, Schoning I, et al. Differences in soil fungal communities between European beech (Fagus sylvatica L.) dominated forests are related to soil and understory vegetation. PLoS One. 2012;10:1-14.
- Castro de Doens L, Reyes E, Simonovic L, et al. Atlas de las tierras secas y degradadas de Panama. Autoridad Nacional del Ambiente. Unidad de Cambio Climatico y Desertificacion. Comite Nacional de Lucha contra la Sequia y la Desertificacion. Panama, Central America: Proyectos Editoriales; 2017.
- Piepenbring M. Inventoring the fungi of Panama. Biodivers Conserv. 2007;16(1):73-84. https://doi.org/10.1007/s10531-006-9051-8
- Rosas-Medina M, Piepenbring M. New records of microfungi from degraded soil close to dry seasonal forest in Western Panama. Nova Hedw. 2018;105:3-4.
- Puttrich L. Forest and Forestry in Hesse. Multipurpose sustainable forest management - commitment for generations. 1st ed. Frankfurt: Hessian ministry for environmental, energy, agriculture and consumer protection. 2012.
- Cerrud R, Villanueva C, Ibrahim M, et al. Caracterizacion de los sistemas silvopastoriles tradicionales del distrito de Bugaba, Provincia de Chiriqui, Panama. Agrofor Am. 2004;42:43-49.
- Cerdan O, Govers G, Bissonnais Y, et al. Rates and spatial variations of soil erosion in Europe: a study based on erosion plot data. Geomorphology. 2010;122(1-2):167-177. https://doi.org/10.1016/j.geomorph.2010.06.011
- Carrasco J, Squella F, Undurraga P. Practicas para el manejo sustentable de los recursos naturales en la recuperacion de suelos degradados. Serie Actas N 16; Santiago, Chile: Instituto de Investigaciones Agropecuarias; 2002.
- Porta J. Tecnicas y experimentos en edafologia. 1st ed. Barcelona, Spain: Coll. Oficial d'Eng. Agron. de Catalunya; 1986. p. 282.
- Cano A. Manual de practicas de la materia de edafologia. 1st ed. Mexico: Gobierno del Estado de Chiapas; 2011.
- Warcup JH. The soil-plate method for isolation of fungi from soil. Nature. 1950;166(4211):117-118. https://doi.org/10.1038/166117b0
- Agnihothrudu V. A comparison of some techniques for the isolation of fungi from tea soils. Mycopathol Mycol Appl. 1961;9:235-242.
- Zuniga F. Tecnicas de muestreo para manejadores de recursos naturales. 1st ed. Yucatan, Mexico: INE-Instituto de Geografia, UNAM; 2004.
- Booth C. The genus Fusarium. CMI Kew Surrey. 1971;1:19-31.
- Chaverri P, Samuels G. Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): species with green ascospores. Stud Mycol. 2003;48:1-116.
- Domsch K, Gams W, Anderson T. Compendium of soil fungi. 2nd ed. Berchtesgadener, Germany: IHW-Verlag, Eching; 2007.
- Hesseltine C, Ellis J. The genus Absidia: Gongronella and cylindrical-spored species of Absidia. Mycologia. 1964;56(4):568-601. https://doi.org/10.2307/3756362
- Martinez E. Estudios de especies micotoxigenas del genero Penicillium. 1st ed. Barcelona: Universitat Autonoma de Barcelona; 2003.
- Samson R, Hong S, Frisvad J. Old and new concepts of species differentiation in Aspergillus. Med Mycol. 2006;44(s1):133-148. https://doi.org/10.1080/13693780600913224
- Chaverri P, Salgado C, Hirooka Y, et al. Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon like anamorphs. Stud Mycol. 2011;68:57-78. https://doi.org/10.3114/sim.2011.68.03
- Stolk A, Samson R. The Ascomycete genus Eupenicillium and related Penicillium anamorphs. Stud Mycol. 1983;23:40-43.
- Gardes M, Bruns T. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol. 1993;2(2):113-118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
- White TJ, Bruns TD, Lee SB, et al. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. 1st ed. PCR - protocols and applications - a laboratory manual publisher. Cambridge (MA): Academic Press; 1990.
- Koljalg U, Larsson KH, Abarenkov K, et al. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol. 2005;166(3):1063-1068. https://doi.org/10.1111/j.1469-8137.2005.01376.x
- Oksanen J, Blanchet F, Friendly M, et al. Community ecology package (Version 2.4-4) [Software] Recuperate from R: L 2017. [cited 2018 Jan. 20]. Available from: https://cran.r-project.org, https://github.com/vegandevs/vegan
- R Core Team. R: a language and environment for statistical computing. Vienna, Austria: R Core Team; 2014.
- Shannon C, Weaver W. The mathematical theory of communication. 1st ed. Urbana (IL): EEUU; University of Illinois Press. 1949.
- Saxena D, Stotzky G. Bacillus thuringiensis (Bt) toxin released from root exudates and biomass of Bt corn has no apparent effect on earthworms, nematodes, protozoa, bacteria, and fungi in soil. Soil Biol Biochem. 2001;33(9):1225-1230. https://doi.org/10.1016/S0038-0717(01)00027-X
- Baxter A, Van der Linde E. Collecting and preserving fungi. A manual for mycology. 1st ed. Pretoria South Africa: Plant Protection Research Institute;1999.
- Van Elsas D, Frois-Duarte G, Keijzer-Wolters A, et al. Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Methods. 2000;43(2):133-151. https://doi.org/10.1016/S0167-7012(00)00212-8
- Samaniego-Gaxiola J, Chew-Madinaveitia Y. Diversity of soil fungi genera in three different condition agricultural fields in La Laguna Mexico. Rev Mex Biodivers. 2007;78:383-390.
- Cruz B, Barra, Del Castillo R, Gutierrez C. La calidad del suelo y sus indicadores. Ecosistemas. 2004;13:90-97.
- Moreno C, Barragan F, Pineda E, et al. Reanalyzing alpha diversity: alternatives to understand and compare information about ecological communities. Rev Mex Biodivers. 2011;82:1249-1261.
- Saikia P, Ram Joshi S. Changes in microfungal community in cherrapunji, the wettest patch on earth as influenced by heavy rain and soil degradation. Adv Microbiol. 2012;02(04):456-464. https://doi.org/10.4236/aim.2012.24059
- Wahegaonkar N, Salunkhe S, Palsingankar P, et al. Diversity of fungi from soils of Aurangabad, M.S., India. Ann Biol Res. 2011;2:198-205.
- Gaddeyya G, Niharika S, Bharathi P, et al. Isolation and identification of soil mycoflora in different crop fields at Salur Mandal. Adv Appl Sci Res. 2012;3:2020-2026.
- Frisvad J, Samson R. Polyphasic taxonomy of Penicillium subgenus Penicillium A guide to identification of food and air-borne terverticillate Penicillia and their mycotoxins. Stud Mycol. 2004;49:1-174.
- Tedersoo L, May T, Smith M. Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages. Mycorrhiza. 2010;20(4):217-263. https://doi.org/10.1007/s00572-009-0274-x
- Alessandro C, Jones L, Humber R, et al. Characterization and phylogeny of Isaria spp. strains (Ascomycota: Hypocreales) using ITS1-5.8SITS2 and elongation factor 1-alpha sequences. J Basic Microbiol. 2013;54:21-31.
- Tedersoo L, Nilsson H, Abarenkov K, et al. 454 Pyrosequencing and sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol. 2010;188(1):291-301. https://doi.org/10.1111/j.1469-8137.2010.03373.x
- Henrique L, CapelariII M. Agaricales Fungi from Atlantic rain forest fragments in Minas Gerais, Brazil. Braz J Microbiol. 2009;40:846-851. https://doi.org/10.1590/S1517-838220090004000015
- Kara O, Bolat I. Influence of soil compaction on microfungal community structure in two soil types in Bartin Province, Turkey. J Basic Microbiol. 2007;47(5):394-399. https://doi.org/10.1002/jobm.200710341
- Harris K, Young I, Hristopher A, et al. Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil. FEMS Microbiol Ecol. 2003;44(1):45-56. https://doi.org/10.1016/S0168-6496(02)00459-2
- Ekelund F, Ronn R, Christensen S. Distribution with depth of protozoa, bacteria and fungi in soil profiles from three Danish forest sites. Soil Biol Biochem. 2001;33(4-5):475-481. https://doi.org/10.1016/S0038-0717(00)00188-7
- Fierer N, Schimel J, Holden P. Variations in microbial community composition through two soil depth profiles. Soil Biol Biochem. 2003;35(1):167-176. https://doi.org/10.1016/S0038-0717(02)00251-1
- Garcia Y, Ramirez W, Sanchez S. Soil quality indicators: a new way to evaluate this resource. Pastosy Forrajes. 2012;35:125-138.
- Goldmann K, Schroter K, Pena R, et al. Divergent habitat filtering of root and soil fungal communities in temperate beech forests. Sci Rep. 2016;6(1):31439. https://doi.org/10.1038/srep31439
- Kirk P, Cannon P, Minter D, et al. Dictionary of the fungi. 10th ed. Europe (UK): CABI; 2008.
- Heather J, Chain B. The sequence of sequencers: the history of sequencing DNA. Genomics. 2016;107(1):1-8. https://doi.org/10.1016/j.ygeno.2015.11.003
- Laehnemann D, Borkhardt A, McHardy A. Denoising DNA deep sequencing data-highthroughput sequencing errors and their correction. Brief Bioinform. 2015;1:1-26.
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