References
- AOAC. 1996. Official methods of analysis of AOAC International. Gaithersburg, MD: AOAC International.
- Awika, J. M., V. Piironen, and S. Bean. 2011. Advances in cereal science: implications to food processing and health promotion. Washington D.C.: American Chemical Society.
- Bao, J., X. Zhou, F. Xu, Q. He, and Y. Park. 2017. Genome-wide association study of the resistant starch content in rice grains. Starch 69 : 1600343. https://doi.org/10.1002/star.201600343
- Begum, H., J. E. Spindel, A. Lalusin, T. Borromeo, G. Gregorio, J. Hernandez, P. Virk, B. Collard, and S. R. McCouch. 2015. Genome-wide association mapping for yield and other agronomic traits in an elite breeding population of tropical rice (Oryza sativa). PLoS One 10 : e0119873. https://doi.org/10.1371/journal.pone.0119873
- Bradbury, P. J., Z. Zhang, D. E. Kroon, T. M. Casstevens, Y. Ramdoss, and E. S. Buckler. 2007. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23 : 2633-2635. https://doi.org/10.1093/bioinformatics/btm308
- Bryant, R. J., A. K. Jackson, K. M. Yeater, W. G. Yan, A. M. McClung, and R. G. Fjellstrom. 2013. Genetic variation and association mapping of protein concentration in brown rice using a diverse rice germplasm collection. Cereal Chemistry Journal 90 : 445-452. https://doi.org/10.1094/CCHEM-09-12-0122-R
- Chung, G. S. and M. H. Heu. 1991. Improvement of Tongil-type rice cultivars from indica/japonica hybridization in Korea. In: Bajaj YPS (ed.) Rice. Heidelberg, Germany: Springer-Verlag Berlin, pp. 105-112.
- Collard, B. C. Y., M. Z. Z. Jahufer, J. B. Brouwer, and E. C. K. Pang. 2005. An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142 : 169-196. https://doi.org/10.1007/s10681-005-1681-5
- Collard, B. C. and D. J. Mackill. 2008. Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philosophical Transactions of the Royal Society B: Biological Sciences 363 : 557-572. https://doi.org/10.1098/rstb.2007.2170
- Fujino, K., M. Obara, T. Shimizu, K. O. Koyanagi, and T. Ikegaya. 2015. Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region. Breeding Science 65 : 403-410. https://doi.org/10.1270/jsbbs.65.403
- Huang, N., E. R. Angeles, J. Domingo, G. Magpantay, S. Singh, G. Zhang, N. Kumaravadivel, J. Bennett, and G. S. Khush. 1997. Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theoretical and Applied Genetics 95 : 313-320. https://doi.org/10.1007/s001220050565
- Huang, X., X. Wei, T. Sang, Q. Zhao, Q. Feng, Y. Zhao, C. Li, C. Zhu, T. Lu, Z. Zhang, M. Li, D. Fan, Y. Guo, A. Wang, L. Wang, L. Deng, W. Li, Y. Lu, Q. Weng, K. Liu, T. Huang, T. Zhou, Y. Jing, W. Li, Z. Lin, E. S. Buckler, Q. Qian, Q. Zhang, J. Li, and B. Han. 2010. Genome-wide association studies of 14 agronomic traits in rice landraces. Nature Genetics 42 : 961-967. https://doi.org/10.1038/ng.695
- Huang, X., Y. Zhao, X. Wei, C. Li, A. Wang, Q. Zhao, W. Li, Y. Guo, L. Deng, C. Zhu, D. Fan, Y. Lu, Q. Weng, K. Liu, T. Zhou, Y. Jing, L. Si, G. Dong, T. Huang, T. Lu, Q. Feng, Q. Qian, J. Li, and B. Han. 2012. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nature Genetics 44 : 32-39. https://doi.org/10.1038/ng.1018
- Jia, L., W. Yan, C. Zhu, H. A. Agrama, A. Jackson, K. Yeater, X. Li, B. Huang, B. Hu, A. McClung, and D. Wu. 2012. Allelic analysis of sheath blight resistance with association mapping in rice. PLoS One 7 : e32703. https://doi.org/10.1371/journal.pone.0032703
- Juliano, B. O. 1971. A simplified assay for milled rice amylose. Cereal Science Today 16 : 334-360.
- Kwon, S. J., S. N. Ahn, H. C. Hong, Y. K. Kim, H. G. Hwang, H. C. Choi, and H. P. Moon. 1999. Genetic diversity of Korean japonica rice cultivars. Korean Journal of Breeding Science 31 : 268-275 (in Korean with English abstract).
- Lee, C. M., H. S. Park, M. K. Baek, J. P. Suh, C. S. Kim, K. M. Lee, S. G. Park, and Y. C. Cho. 2019. Characterization of grain-related traits of 300 Korean rice varieties. Presented at the 2019 Korean Society of Breeding Science (KSBS) & Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO) international conference on plant breeding for sustainable development, Gwangju, Republic of Korea, 2-5 July 2019.
- Li, G., Y. Na, S. Kwon, and Y. Park. 2014. Association analysis of seed longevity in rice under conventional and high-temperature germination conditions. Plant Systematics and Evolution 300 : 389-402. https://doi.org/10.1007/s00606-013-0889-4
- Li, X., W. Yan, H. Agrama, L. Jia, A. Jackson, K. Moldenhauer, K. Yeater, A. McClung, and D. Wu. 2012. Unraveling the complex trait of harvest index with association mapping in rice (Oryza sativa L.). PLoS One 7 : e29350. https://doi.org/10.1371/journal.pone.0029350
- Li, X., W. Yan, H. Agrama, L. Jia, X. Shen, A. Jackson, K. Moldenhauer, K. Yeater, A. McClung, and D. Wu. 2011. Mapping QTLs for improving grain yield using the USDA rice mini-core collection. Planta 234 : 347-361. https://doi.org/10.1007/s00425-011-1405-0
- Liu, K. and S. V. Muse. 2005. PowerMarker : an integrated analysis environment for genetic marker analysis. Bioinformatics 21 : 2128-2129. https://doi.org/10.1093/bioinformatics/bti282
- McCouch, S. R., L. Teytelman, Y. Xu, K. B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing, Q. Zhang, I. Kono, M. Yano, R. Fjellstrom, G. DeClerck, D. Schneider, S. Cartinhour, D. Ware, and L. Stein. 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Research 9 : 199-207. https://doi.org/10.1093/dnares/9.6.199
- McCouch, S. R., M. H. Wright, C. Tung, L. G. Maron, K. L. McNally, M. Fitzgerald, N. Singh, G. DeClerck, F. Agosto-Perez, P. Korniliev, A. J. Greenberg, M. E. B. Naredo, S. M. Q. Mercado, S. E. Harrington, Y. Shi, D. A. Branchini, P. R. Kuser-Falcão, H. Leung, K. Ebana, M. Yano, G. Eizenga, A. McClung, and J. Mezey. 2016. Open access resources for genome-wide association mapping in rice. Nature Communications 7 : 10532. https://doi.org/10.1038/ncomms10532
- Mo, Y., J. Jeung, Y. Shin, C. Park, K. Kang, and B. Kim. 2013. Agronomic and genetic analysis of Suweon 542, a rice floury mutant line suitable for dry milling. Rice 6 : 37. https://doi.org/10.1186/1939-8433-6-37
- Murray, M. G. and W. F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research 8 : 4321-4326. https://doi.org/10.1093/nar/8.19.4321
- Myles, S., J. Peiffer, P. J. Brown, E. S. Ersoz, Z. Zhang, D. E. Costich, and E. S. Buckler. 2009. Association mapping : critical considerations shift from genotyping to experimental design. Plant Cell 21 : 2194-2202. https://doi.org/10.1105/tpc.109.068437
- Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155 : 945-959. https://doi.org/10.1093/genetics/155.2.945
- RDA. 2003. Manual for standard evaluation method in agricultural experiment and research. Suwon, Korea : Rural Development Administration.
- Shibaya, T., K. Hori, E. Ogiso-Tanaka, U. Yamanouchi, K. Shu, N. Kitazawa, A. Shomura, T. Ando, K. Ebana, J. Wu, T. Yamazaki, and M. Yano. 2016. Hd18, encoding histone acetylase related to Arabidopsis FLOWERING LOCUS D, is involved in the control of flowering time in rice. Plant Cell and Physiology 57 : 1828-1838. https://doi.org/10.1093/pcp/pcw105
- Schlappi, M. R., A. K. Jackson, G. C. Eizenga, A. Wang, C. Chu, Y. Shi, N. Shimoyama, and D. L. Boykin. 2017. Assessment of five chilling tolerance traits and GWAS mapping in rice using the USDA mini-core collection. Frontiers in Plant Science 8 : 957. https://doi.org/10.3389/fpls.2017.00957
- Shinada, H., T. Yamamoto, H. Sato, E. Yamamoto, K. Hori, J. Yonemaru, T. Sato, and K. Fujino. 2015. Quantitative trait loci for rice blast resistance detected in a local rice breeding population by genome-wide association mapping. Breeding Science 65 : 388-395. https://doi.org/10.1270/jsbbs.65.388
- Song, M., J. Lee, Y. Cho, Y. Jeon, S. Lee, J. Ku, S. Choi, and H. Hwang. 2002. Narrow genetic background of Korean rice germplasm as revealed by DNA fingerprinting with SSR markers and their pedigree information. Korean Journal of Genetics 24 : 397-403.
- Tester, M. and P. Langridge. 2010. Breeding technologies to increase crop production in a changing world. Science 327 : 818-822. https://doi.org/10.1126/science.1183700
- Verdeprado, H., T. Kretzschmar, H. Begum, C. Raghavan, P. Joyce, P. Lakshmanan, J. N. Cobb, and B. C. Y. Collard. 2018. Association mapping in rice : basic concepts and perspectives for molecular breeding. Plant Production Science 21 : 159-176. https://doi.org/10.1080/1343943X.2018.1483205
- Wang, Z., F. Zheng, G. Shen, J. Gao, D. P. Snustad, M. Li, J. Zhang, and M. Hong. 1995. The amylose content in rice endosperm is related to the post‐transcriptional regulation of the waxy gene. Plant Journal 7 : 613-622. https://doi.org/10.1046/j.1365-313X.1995.7040613.x
- Wu, W., X. Zheng, G. Lu, Z. Zhong, H. Gao, L. Chen, C. Wu, H. Wang, Q. Wang, K. Zhou, J. Wang, F. Wu, X. Zhang, X. Guo, Z. Cheng, C. Lei, Q. Lin, L. Jiang, H. Wang, S. Ge, and J. Wan. 2013 Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia. Proceedings of the National Academy of Sciences of the United States of America 110 : 2775-2780.
- Xu, F., J. Bao, T. Kim, and Y. Park. 2016. Genome-wide association mapping of polyphenol contents and antioxidant capacity in whole-grain rice. Journal of Agricultural and Food Chemistry 64 : 4695-4703. https://doi.org/10.1021/acs.jafc.6b01289
- Yano, K., E. Yamamoto, K. Aya, H. Takeuchi, P. Lo, L. Hu, M. Yamasaki, S. Yoshida, H. Kitano, K. Hirano, and M. Matsuoka. 2016. Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice. Nature Genetics 48 : 927-934. https://doi.org/10.1038/ng.3596
- Yano, M., Y. Katayose, M. Ashikari, U. Yamanouchi, L. Monna, T. Fuse, T. Baba, K. Yamamoto, Y. Umehara, Y. Nagamura, and T. Sasaki. 2000. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12 : 2473-2483. https://doi.org/10.1105/tpc.12.12.2473
- Zhang, P., K. Zhong, M. Q. Shahid, and H. Tong. 2016. Association analysis in rice : from application to utilization. Frontiers in Plant Science 7 :1202.
- Zhao, W., J. Chung, S. Kwon, J. Lee, K. Ma, and Y. Park. 2013. Association analysis of physicochemical traits on eating quality in rice (Oryza sativa L.). Euphytica 191 : 9-21. https://doi.org/10.1007/s10681-012-0820-z
- Zhu, L., J. Hu, K. Zhu, Y. Fang, Z. Gao, Y. He, G. Zhang, L. Guo, D. Zeng, G. Dong, M. Yan, J. Liu, and Q. Qian. 2011. Identification and characterization of SHORTENED UPPERMOST INTERNODE 1, a gene negatively regulating uppermost internode elongation in rice. Plant Molecular Biology 77 : 475. https://doi.org/10.1007/s11103-011-9825-6
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