References
- Saccardo PA. Sylloge Fungorum II. Padova, Italy: Saccardo; 1883.
- Rossman AY, Samuels GJ, Rogerson CT, et al. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol. 1999;42:1-260.
- Maharachchikumbura SSN, Hyde KD, Jones EBG, et al. Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers. 2015;72:199-301. https://doi.org/10.1007/s13225-015-0331-z
- Maharachchikumbura SSN, Hyde KD, Jones EBG, et al. Families of Sordariomycetes. Fungal Divers. 2016;79:1-317. https://doi.org/10.1007/s13225-016-0369-6
- Zeng ZQ, Zhuang WY. Phylogenetic position of Pseudohypocrea (Hypocreales). Mycoscience. 2017;58:274-281. https://doi.org/10.1016/j.myc.2017.04.005
- Wijayawardene NN, Hyde KD, Lumbsch HT, et al. Outline of Ascomycota: 2017. Fungal Divers. 2018;88:167-263. https://doi.org/10.1007/s13225-018-0394-8
- Spatafora JW, Blackwell M. Molecular systematic of unitunicate perithecial ascomycetes: the Clavicipitales-Hypocreales connection. Mycologia. 1993;85:912-922. https://doi.org/10.1080/00275514.1993.12026353
- Seifert KA. A monograph of Stilbella and some allied hyphomycetes. Stud Mycol. 1985;27:1-235.
- Rehner SA, Samuels GJ. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycol Res. 1994;98:625-634. https://doi.org/10.1016/S0953-7562(09)80409-7
- Candoussau F, Magni JF. New French records. Mycologist. 1995;9:12-14. https://doi.org/10.1016/S0269-915X(09)80240-1
- Poldmaa K, Larsson E, Kojalg U. Phylogenetic relationships in Hypomyces and allied genera, with emphasis on species growing on wood-decaying homobasidiomycetes. Can J Bot. 1999;88:1756-1768. https://doi.org/10.1139/cjb-77-12-1756
- Rogerson CT, Samuels GJ. Species of Hypomyces and Nectria occurring on Discomycetes. Mycologia. 1985;77:763-783. https://doi.org/10.1080/00275514.1985.12025164
- Rogerson CT, Samuels GJ. Boleticolous species of Hypomyces. Mycologia. 1989;81:413-432. https://doi.org/10.1080/00275514.1989.12025764
- Rogerson CT, Samuels GJ. Polyporicolous species of Hypomyces. Mycologia. 1993;85:231-272. https://doi.org/10.2307/3760461
- Rogerson CT, Samuels GJ. Agaricolous species of Hypomyces. Mycologia. 1994;86: 839-866. https://doi.org/10.1080/00275514.1994.12026489
- Poldmaa K. A new species of Hypomyces and three of Cladobotryum from Estonia. Mycotaxon. 1996;59:389-405.
- Poldmaa K. Generic delimitation of the fungicolous Hypocreaceae. Stud Mycol. 2000;45:83-94.
- Poldmaa K. Three species of Hypomyces growing on basidiomata of Stereaceae. Mycologia. 2003;95:921-933. https://doi.org/10.1080/15572536.2004.11833051
- Poldmaa K. Tropical species of Cladobotryum and Hypomyces producing red pigments. Stud Mycol. 2011;68:1-34. https://doi.org/10.3114/sim.2011.68.01
- Poldmaa K, Samuels GJ. Aphyllophoricolous species of Hypomyces with KOH negative perithecia. Mycologia. 1999;91:177-199. https://doi.org/10.1080/00275514.1999.12061007
- Poldmaa K, Samuels GJ. Fungicolous hypocreaceae (Ascomycota: Hypocreales) from Khao Yai National Park, Thailand. Sydowia. 2004;56:79-130.
- Poldmaa K, Lodge DJ, Samuels GJ. Three new polyporicolous species of Hypomyces and their Cladobotryum anamorphs. Sydowia. 1997;49:80-93.
- Kirk PM, Cannon PF, Minter DW, et al. Dictionary of the fungi. 10th ed. Wallingford, England: CABI; 2008.
- Zhuang WY, Chen SL, Zeng ZQ, et al. A new species of Hypomyces (Hypocreales) on Schizophyllum sp. from China. Mycosystema. 2012;31:821-826.
- Rossman AY, Seifert KA, Samuel GJ, et al. Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection. IMA Fungus. 2013;4:41-51. https://doi.org/10.5598/imafungus.2013.04.01.05
- Zare R, Gams W. More white verticillium-like anamorphs with erect conidiophores. Mycol Progress. 2016;15:993-1030. https://doi.org/10.1007/s11557-016-1214-8
- Zeng ZQ, Zhuang WY. Three new species and two new Chinese records of Hypomyces (Hypocreales). Mycosystema. 2016;35:1048-1055.
- Lechat C, Gardiennet A, Fournier J. First report of a lichenicolous species of Hypomyces (Hypocreaceae), H. peltigericola sp. nov. Ascomycete.org. 2017;9:23-26.
- Wei IC, Kirschner R. Two fungicolous anamorphic species of Hypomyces s. lat. from Taiwan. Fung Sci. 2017;32:15-25.
- Teng SC. Fungi of China. Beijing, China: Science Press; 1963.
- Wang YZ, Wu SH, Chou WN, et al. List of the Fungi in Taiwan. Taipei, Taiwan: Committee for Agriculture; 1999.
- Tamm H, Poldmaa K. Diversity, host associations, and phylogeography of temperate aurofusarin-producing Hypomyces/Cladobotryum including causal agents of cobweb disease of cultivated mushrooms. Fungal Biol. 2013;117:348-367. https://doi.org/10.1016/j.funbio.2013.03.005
- Liu L, Liu RX, Basnet BB, et al. A new seco-pimarane diterpene and four new b-resorcylic acid lactones from a fungicolous Hypomyces subiculosus. RSC Adv. 2017;7:51986-51992. https://doi.org/10.1039/C7RA11365J
- Persoon CH. Dispositio methodica fungorum. Romer's Neues Magazin Botanische. 1794;1:81-128.
- Bissett J, Gams W, Jaklitsch W, et al. Accepted Trichoderma names in the year 2015. IMA Fungus. 2015;6:263-295. https://doi.org/10.5598/imafungus.2015.06.02.02
- Mukherjee PK, Horwitz BA, Singh US, et al. Trichoderma: biology and applications. Wallingford, England: CABI; 2013.
- Chen K, Zhuang WY. Seven soil-inhabiting new species of the genus Trichoderma in the Viride clade. Phytotaxa. 2017;312:28-46. https://doi.org/10.11646/phytotaxa.312.1.2
- Zhang YB, Zhuang WY. Two new species of Trichoderma with green ascospores on woody substrates. Mycosystema. 2019;38:11-22.
- Zhang YB, Zhuang WY. Epitypifications of three Trichoderma species and new Chinese records of the genus. Mycosystema. 2019;38:23-38.
- Jangir M, Pathak R, Sharma S. Trichoderma and its potential applications. In: Singh D, Singh H, Prabha R, editors. Plant-microbe interactions in agro-ecological perspectives. Singapore: Springer;2017.
- Hanada RE, Jorge Souza TD, Pomella AW, et al. Trichoderma martiale sp. nov., a new endophyte from sapwood of Theobroma cacao with a potential for biological control. Mycol Res. 2008;112:1335-1343. https://doi.org/10.1016/j.mycres.2008.06.022
- Cheng CH, Yang CA, Peng KC. Antagonism of Trichoderma harzianum ETS 323 on Botrytis cinerea mycelium in culture conditions. Phytopathology. 2012;102:1054-1063. https://doi.org/10.1094/PHYTO-11-11-0315
- Stewart AHR. Applications of Trichoderma in plant growth promotion. In: Gupta VK, Schmoll M, Herrera-Estrella A, Upadhyay RS, Druzhinina I, Tuohy M, editors. Biotechology and biology of Trichoderma. Netherlands: Elsevier; 2014. p. 415-428.
- Harman GE. Myths and dogmas of biocontrol. Changes in perceptions derived from research on Trichoderma harzianum T22. Plant Dis. 2000;84:377-393. https://doi.org/10.1094/PDIS.2000.84.4.377
- Joshi PK, Swarup A, Maheshwari S, et al. Bioremediation of heavy metals in liquid media through fungi isolated from contaminated sources. Indian J Microbiol. 2011;51:482-487. https://doi.org/10.1007/s12088-011-0110-9
- Jaklitsch WM. European species of Hypocrea. Part I. The green-spored species. Stud Mycol. 2009;63:1-91. https://doi.org/10.3114/sim.2009.63.01
- Jaklitsch WM. European species of Hypocrea Part II: species with hyaline ascospores. Fungal Divers. 2011;48:1-250. https://doi.org/10.1007/s13225-011-0088-y
- Jaklitsch WM, Voglmayr H. Biodiversity of Trichoderma (Hypocreaceae) in Southern Europe and Macaronesia. Stud Mycol. 2015;80:1-87. https://doi.org/10.1016/j.simyco.2014.11.001
- Qin WT, Zhuang WY. Four new species of Trichoderma with hyaline ascospores from central China. Mycol Prog. 2016;15:811-825. https://doi.org/10.1007/s11557-016-1211-y
- Zhang YB, Zhuang WY. Four new species of Trichoderma with hyaline ascospores from southwest China. Mycosphere. 2017;8:1914-1929. https://doi.org/10.5943/mycosphere/8/10/14
- Nirenberg HI. Studies on the morphologic and biologic differentiation in Fusarium section Liseola. Mitt Biol Bundesanst Land Forstwirtsch. 1976;169:1-117.
- Wang L, Zhuang WY. Designing primer sets for amplification of partial calmodulin genes from penicillia. Mycosystema. 2004;23:466-473. https://doi.org/10.3969/j.issn.1672-6472.2004.04.004
- White TJ, Bruns T, Lee S, et al. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York (NY): Academic Press;1990. p. 315-322.
- Vilgalys R, Hester M. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol. 1990;172:4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Carbone I, Kohn LM. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia. 1999;91:553-556. https://doi.org/10.1080/00275514.1999.12061051
- Rehner SA, Buckley E. A Beauveria phylogeny inferred from nuclear ITS and EF1-alpha sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia. 2005;97:84-98. https://doi.org/10.1080/15572536.2006.11832842
- Jaklitsch WM, Komon M, Kubicek CP, et al. Hypocrea voglmayrii sp. nov. from the Austrian Alps represents a new phylogenetic clade in Hypocrea/Trichoderma. Mycologia. 2005;97:1365-1378. https://doi.org/10.1080/15572536.2006.11832743
- Liu YJ, Whelen S, Hall BD. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Mol Biol Evol. 1999;16:1799-1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Chaverri P, Samuels GJ. Hypocrea/Trichoderma (Ascomycota, Hypocreales, Hypocreaceae): species with green ascospores. Stud Mycol. 2003;48:1-116.
- Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95-98.
- Thompson JD, Gibson TJ, Plewniak F, et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997;25:4876-4882. https://doi.org/10.1093/nar/25.24.4876
- Druzhinina IS, Kopchinskiy AG, Komon M, et al. An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genet Biol. 2005;42:813-828. https://doi.org/10.1016/j.fgb.2005.06.007
- Samuels GJ, Dodd S, Lu BS, et al. The Trichoderma koningii aggregate species. Stud Mycol. 2006;56:67-133. https://doi.org/10.3114/sim.2006.56.03
- Swofford DL. PAUP 4.0b10: phylogenetic analysis using parsimony. Sunderland (MA): Sinauer Associates; 2002.
- Nguyen LT, Schmidt HA, von Haeseler A, et al. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol. 2015;32:268-274. https://doi.org/10.1093/molbev/msu300
- Chernomor O, von Haeseler A, Minh BQ. Terrace aware data structure for phylogenomic inference from supermatrices. Syst Biol. 2016;65:997-1008. https://doi.org/10.1093/sysbio/syw037
- Page RD. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci. 1996;12:357-358.
- Cunningham CW. Can three incongruence tests predict when data should be combined? Mol Biol Evol. 1997;14:733-740. https://doi.org/10.1093/oxfordjournals.molbev.a025813
- Gams W. Phialides with solitary conidia? Persoonia. 1973;7:161-169.
- Qin WT, Zhuang WY. Two new hyaline-ascospored species of Trichoderma and their phylogenetic positions. Mycologia. 2016;108:205-214. https://doi.org/10.3852/15-144
- Kim CS, Shirouzu T, Nakagiri A, et al. Trichoderma eijii and T. pseudolacteum, two new species from Japan. Mycol Prog. 2013;12:739-753. https://doi.org/10.1007/s11557-012-0886-y
- Zhu ZX, Zhuang WY. Three new species of Trichoderma with hyaline ascospores from China. Mycologia. 2015;107:328-345. https://doi.org/10.3852/14-141
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