References
- Gal-Mor O, Boyle EC, Grassl GA. 2014. Same species, different diseases: how and why typhoidal and non-typhoidal Salmonella enterica serovars differ. Front Microbiol. 5: 391.
- Yaron S, Romling U. 2014. Biofilm formation by enteric pathogens and its role in plant colonization and persistence. Microb. Biotechnol. 7: 496-516. https://doi.org/10.1111/1751-7915.12186
- Ochman H, Groisman EA. 1995. The evolution of invasion by enteric bacteria. Can. J. Microbiol. 41: 555-561. https://doi.org/10.1139/m95-074
- Fukuyama S, Watanabe Y, Kondo N, Nishinomiya T, Kawamoto S, Isshiki K, et al. 2009. Efficiency of sodium hypochlorite and calcinated calcium in killing Escherichia coli O157:H7, Salmonella spp., and Staphylococcus aureus attached to freshly shredded cabbage. Biosci. Biotechnol. Biochem. 73: 9-14. https://doi.org/10.1271/bbb.70722
- Shirron N, Kisluk G, Zelikovich Y, Eivin I, Shimoni E, Yaron S. 2009. A comparative study assaying commonly used sanitizers for antimicrobial activity against indicator bacteria and a Salmonella Typhimurium strain on fresh produce. J. Food Prot. 72: 2413-2417. https://doi.org/10.4315/0362-028X-72.11.2413
- Lockhart WR, Holt JG. 1964. Numerical classification of Salmonella serotypes. J. Gen. Microbiol. 35: 115-124. https://doi.org/10.1099/00221287-35-1-115
- Jackson BR, Griffin PM, Cole D, Walsh KA, Chai SJ. 2013. Outbreak-associated Salmonella enterica serotypes and food Commodities, United States, 1998-2008. Emerg. Infect. Dis. 19: 1239-1244. https://doi.org/10.3201/eid1908.121511
- Herman KM, Hall AJ, Gould LH. 2015. Outbreaks attributed to fresh leafy vegetables, United States, 1973-2012. Epidemio Infect. 143: 3011-3021. https://doi.org/10.1017/S0950268815000047
- Kroupitski Y, Golberg D, Belausov E, Pinto R, Swartzberg D, Granot D, et al. 2009. Internalization of Salmonella enterica in leaves is induced by light and involves chemotaxis and penetration through open stomata. Appl. Environ. Microbiol. 75: 6076-6086. https://doi.org/10.1128/AEM.01084-09
- Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97: 6640-6645. https://doi.org/10.1073/pnas.120163297
- Schroeder A, Mueller O, Stocker S, Salowsky R, Leiber M, Gassmann M, et al. 2006. The RIN: an RNA integrity number for assigning integrity values to RNA measurements. BMC Mol. Biol. 7: 3. https://doi.org/10.1186/1471-2199-7-3
- Robinson MD, Oshlack A. 2010. A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 11: R25. https://doi.org/10.1186/gb-2010-11-3-r25
- Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, et al. 2013. A comprehensive evaluation of normalization methods for Illumina highthroughput RNA sequencing data analysis. Brief Bioinform. 14: 671-683. https://doi.org/10.1093/bib/bbs046
- Risso D, Ngai J, Speed TP, Dudoit S. 2014. Normalization of RNA-seq data using factor analysis of control genes or samples. Nat. Biotechnol. 32: 896-902. https://doi.org/10.1038/nbt.2931
- Tatusov RL, Koonin EV, Lipman DJ. 1997. A genomic perspective on protein families. Science 278: 631-637. https://doi.org/10.1126/science.278.5338.631
- Perez-Llamas C, Lopez-Bigas N. 2011. Gitools: analysis and visualisation of genomic data using interactive heat-maps. PLoS One 6: e19541. https://doi.org/10.1371/journal.pone.0019541
- Vikram A, Jesudhasan PR, Jayaprakasha GK, Pillai BS, Patil BS. 2010. Grapefruit bioactive limonoids modulate E . coli O157:H7 TTS S and biofilm. Int. J. Food Microbiol. 140: 109-116. https://doi.org/10.1016/j.ijfoodmicro.2010.04.012
- Cooley M, Carychao D, Crawford-Miksza L, Jay MT, Myers C, Rose C, et al. 2007. Incidence and tracking of Escherichia coli O157:H7 in a major produce production region in California. PLoS One 2: e1159. https://doi.org/10.1371/journal.pone.0001159
- Galan JE. 2001. Salmonella interactions with host cells: type III secretion at work. Annu. Rev. Cell Dev. Biol. 17: 53-86. https://doi.org/10.1146/annurev.cellbio.17.1.53
- McGhie EJ, Brawn LC, Hume PJ, Humphreys D, Koronakis V. 2009. Salmonella takes control: effector-driven manipulation of the host. Currt. Opin. Microbiol. 12: 117-124. https://doi.org/10.1016/j.mib.2008.12.001
- Schikora A, Virlogeux-Payant I, Bueso E, Garcia AV, Nilau T, Charrier A, et al. 2011. Conservation of Salmonella infection mechanisms in plants and animals. PLoS One 6: e24112. https://doi.org/10.1371/journal.pone.0024112
- Shirron N, Yaron S. 2011. Active suppression of early immune response in tobacco by the human pathogen Salmonella Typhimurium. PLoS One 6: e18855. https://doi.org/10.1371/journal.pone.0018855
- Espinel IC, Guerra PR, Jelsbak L. 2016. Multiple roles of putrescine and spermidine in stress resistance and virulence of Salmonella enterica serovar Typhimurium. Microb. Pathog. 95: 117-123. https://doi.org/10.1016/j.micpath.2016.03.008
- Jormakka M, Tornroth S, Byrne B, Iwata S. 2002. Molecular basis of proton motive force generation: structure of formate dehydrogenase-N. Science 295: 1863-1868. https://doi.org/10.1126/science.1068186
- Mackay WJ, Han S, Samson LD. 1994. DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli. J. Bacteriol. 176: 3224-3230. https://doi.org/10.1128/jb.176.11.3224-3230.1994
- Roessner CA, Warren MJ, Santander PJ, Atshaves BP, Ozaki S, Stolowich NJ, et al. 1992. Expression of 9 Salmonella typhimurium enzymes for cobinamide synthesis. Identification of the 11-methyl and 20-methyl transferases of corrin biosynthesis. FEBS Lett. 301: 73-78. https://doi.org/10.1016/0014-5793(92)80213-Z
- Paiva JB, Penha Filho RA, Junior AB, Lemos MV. 2011. Requirement for cobalamin by Salmonella enterica serovars Typhimurium, Pullorum, Gallinarum and Enteritidis during infection in chickens. Braz. J. Microbiol. 42: 1409-1418. https://doi.org/10.1590/S1517-83822011000400024
- Van Houdt R, Michiels CW. 2010. Biofilm formation and the food industry, a focus on the bacterial outer surface. J. Appl. Microbiol. 109: 1117-1131. https://doi.org/10.1111/j.1365-2672.2010.04756.x
- Wojtaszek P. 1997. Oxidative burst: an early plant response to pathogen infection. Biochem. J. 322 (Pt 3): 681-692. https://doi.org/10.1042/bj3220681
- Lamb C, Dixon RA. 1997. The oxidative burst in plant disease resistance. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48: 251-275. https://doi.org/10.1146/annurev.arplant.48.1.251
- Sivapalasingam S, Friedman CR, Cohen L, Tauxe RV. 2004. Fresh produce: a growing cause of outbreaks of foodborne illness in the United States, 1973 through 1997. J. Food Prot. 67: 2342-2353. https://doi.org/10.4315/0362-028X-67.10.2342
- Olaimat AN, Holley RA. 2012. Factors influencing the microbial safety of fresh produce: a review. Food Microbiol. 32: 1-19. https://doi.org/10.1016/j.fm.2012.04.016
- Kisluk G, Yaron S. 2012. Presence and persistence of Salmonella enterica serotype typhimurium in the phyllosphere and rhizosphere of spray-irrigated parsley. Appl. Environ. Microbiol. 78: 4030-4036. https://doi.org/10.1128/AEM.00087-12
- Markland SM, Shortlidge KL, Hoover DG, Yaron S, Patel J, Singh A, et al. 2013. Survival of pathogenic Escherichia coli on basil, lettuce, and spinach. Zoonoses Public Health 60: 563-571. https://doi.org/10.1111/zph.12033
- Douesnard-Malo F, Daigle F. 2011. Increased persistence of Salmonella enterica serovar Typhi in the presence of Acanthamoeba castellanii. Appl. Environ. Microbiol. 77: 7640- 7646. https://doi.org/10.1128/AEM.00699-11
- Lieberman VM, Zhao IY, Schaffner DW, Danyluk MD, Harris LJ. 2015. Survival or growth of inoculated Escherichia coli O157:H7 and Salmonella on yellow onions (Allium cepa) under conditions simulating food service and consumer handling and storage. J. Food Prot. 78: 42-50. https://doi.org/10.4315/0362-028X.JFP-14-281
- Foster JW, Park YK, Penfound T, Fenger T, Spector MP. 1990. Regulation of NAD metabolism in Salmonella typhimurium: molecular sequence analysis of the bifunctional nadR regulator and the nadA-pnuC operon. J. Bacteriol. 172: 4187-4196. https://doi.org/10.1128/jb.172.8.4187-4196.1990
- Foster JW, Moat AG. 1980. Nicotinamide adenine dinucleotide biosynthesis and pyridine nucleotide cycle metabolism in microbial systems. Microbiol. Rev. 44: 83-105.
- Baianova Iu I, Trubachev IN. 1981. [Comparative evaluation of the vitamin composition of unicellular algae and higher plants grown under artificial conditions]. Prikl. Biokhim. Mikrobiol. 17: 400-407.
- Obradors N, Badia J, Baldoma L, Aguilar J. 1988. Anaerobic metabolism of the L-rhamnose fermentation product 1,2- propanediol in Salmonella typhimurium. J. Bacteriol. 170: 2159-2162. https://doi.org/10.1128/jb.170.5.2159-2162.1988
- Boronat A, Aguilar J. 1981. Metabolism of L-fucose and L-rhamnose in Escherichia coli: differences in induction of propanediol oxidoreductase. J. Bacteriol. 147: 181-185.
- Lawley TD, Bouley DM, Hoy YE, Gerke C, Relman DA, Monack DM. 2008. Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota. Infect. Immun. 76: 403-416. https://doi.org/10.1128/IAI.01189-07
- Stecher B, Robbiani R, Walker AW, Westendorf AM, Barthel M, Kremer M, et al. 2007. Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota. PLoS Biol. 5: 2177-2189.
- Hung CC, Garner CD, Slauch JM, Dwyer ZW, Lawhon SD, Frye JG, et al. 2013. The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD. Mol. Microbiol. 87: 1045-1060. https://doi.org/10.1111/mmi.12149
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