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견과류로부터 효율적인 DNA 추출 방법 비교

Comparison of methods of DNA extraction from tree nuts

  • 서승만 (경희대학교 생명자원과학연구원 식품생명공학과) ;
  • 박샛별 (경희대학교 생명자원과학연구원 식품생명공학과) ;
  • 김미주 (경희대학교 생명자원과학연구원 식품생명공학과) ;
  • 김해영 (경희대학교 생명자원과학연구원 식품생명공학과)
  • Suh, Seung-Man (Institute of Life Sciences & Resources, Department of Food Science and Biotechnology, Kyung Hee University) ;
  • Park, Saet-Byul (Institute of Life Sciences & Resources, Department of Food Science and Biotechnology, Kyung Hee University) ;
  • Kim, Mi-Ju (Institute of Life Sciences & Resources, Department of Food Science and Biotechnology, Kyung Hee University) ;
  • Kim, Hae-Yeong (Institute of Life Sciences & Resources, Department of Food Science and Biotechnology, Kyung Hee University)
  • 투고 : 2018.02.25
  • 심사 : 2018.06.14
  • 발행 : 2018.08.31

초록

본 연구에서는 견과류로부터 식품 분석에 사용될 DNA를 4가지 방법으로 추출하고 그 효율을 비교하였다. 동일한 양의 시료를 사용하여 추출된 DNA의 양은 CTAB법이 가장 우수한 것으로 확인되었지만, 추출 시간이 수배이상 오래 걸리고 유기용매를 사용한다는 한계점이 있다. 다른 방법들과 DNA 추출 양의 차이가 큰 잣, 캐슈너트, 피스타치오 너트, 땅콩의 시료는 CTAB법이 가장 효율적인 방법으로 판단되며, 호두, 헤이즐넛, 아몬드의 시료는 변형 CTAB법과 실리카 막법이 CTAB법을 대체할 수 있을 것으로 판단된다. 추출된 DNA를 식물 내재유전자 및 각 견과류에 특이적인 유전자를 사용하여 PCR을 진행하였으며, 모든 추출 방법에서 DNA가 정상적으로 증폭되는 것을 확인하였다.

This study aimed to explore efficient DNA extraction methods using tree nuts. Four different DNA extraction procedures, including silica membrane method, modified silica method, cetyltrimethylammonium bromide (CTAB) method, and modified CTAB method were examined for their relative efficiency in extracting DNA from pistachio, pine nut, almond, hazelnut, cashew nut, walnut, and peanut. The quality and quantity of the extracted DNA were subsequently assessed by spectrometric measurements, gel electrophoresis, and PCR amplifications. CTAB method was the most appropriate one for extracting DNA from pine nut, cashew nut, pistachio, and peanut. However, it could be replaced by the silica membrane method for walnut and modified CTAB method for almond and hazelnut.

키워드

참고문헌

  1. Chapela MJ, Sotelo CG, Perez-Martin RI. Comparison of DNA extraction methods from muscle of canned tuna for species identification. Food Control 18: 1211-1215 (2007) https://doi.org/10.1016/j.foodcont.2006.07.016
  2. Cheng F, Wu J, Zhang J, Pan A, Quan S, Zhang D, Kim HY, Li X, Zhou S, Yang L. Development and inter-laboratory transfer of a decaplex polymerase chain reaction assay combined with capillary electrophoresis for the simultaneous detection of ten food allergens. Food Chem. 199: 799-808 (2016) https://doi.org/10.1016/j.foodchem.2015.12.058
  3. Costa J, Mafra I, Oliverira BPP. High resolution melting analysis as a new approach to detect almond DNA encoding for Pru du 5 allergen in foods. Food Chem. 133: 1062-1069 (2012) https://doi.org/10.1016/j.foodchem.2012.01.077
  4. Costa J, Melo VS, Santos CG, Oliveira BPP, Mafra I. Tracing tree nut allergen in chocolate: A comparison of DNA extraction protocols. Food Chem. 187: 469-476 (2015) https://doi.org/10.1016/j.foodchem.2015.04.073
  5. Crespo JF, James JM, Fernandez-Rodriguez C, Rodriguez J. Food allergy: nuts and tree nuts. Brit. J. Nutr. 96. 95-102 (2006) https://doi.org/10.1017/BJN20061869
  6. Di Pinto A, Forte VT, Tantillo G. A comparison of DNA extraction methods for food analysis. Food Control 18: 76-80 (2007) https://doi.org/10.1016/j.foodcont.2005.08.011
  7. Dover S, Lee D. Development of sensitive crop-specific polymerase chain reaction assays using 5S DNA: applications in food traceability. J. Agr. Food Chem. 55: 4640-4644 (2007) https://doi.org/10.1021/jf063259v
  8. Engel KH, Demmel A, Ehlert A, Hupfer C, Busch U. Simultaneous detection of DNA from ten food allergens by ligation-dependent probe amplification. Food Addit. Contam. 26: 409-418 (2009)
  9. Garino C, De Paolis A, Coisson JD, Bianchi DM, Decastelli L, Arlorio M. Sensitive and specific detection of pine nut (Pinus spp.) by real-time PCR in complex food products. Food Chem. 194: 980-985 (2016) https://doi.org/10.1016/j.foodchem.2015.08.114
  10. Herman L, De Block J, Viane R. Detection of hazelnut DNA traces in chocolate by PCR. Int. J. Food Sci. Tech. 38: 633-640 (2003) https://doi.org/10.1046/j.1365-2621.2003.00722.x
  11. Holzhauser T, Strphan O, Vieths S. Polymerase chain reaction (PCR) for detection of potentially allergenic hazelnut residues in complex food matrixes. Eur. Food Res. Technol. 211: 360-365 (2000) https://doi.org/10.1007/s002170000152
  12. Iniesto E, Jimenez A, Prieto N, Cabanillas B, Burbano C, Pedrosa MM, Rodiguez J, Muzquiz M, Crespo JF, Cuadrado C. Real Time PCR to detect hazelnut allergen coding sequences in processed foods. Food Chem. 138: 1976-1981 (2013) https://doi.org/10.1016/j.foodchem.2012.11.036
  13. Kehrmeyer SR, Applegate BM, Pinkart HC. Combined lipid/DNA extraction method for environmental samples. J. Microbiol. Meth. 25: 153-163 (1996) https://doi.org/10.1016/0167-7012(95)00094-1
  14. Kim JN, Cho DH, Kim YM. Studies on the physicochemical properties of natural and imitation nuts. Korean J. Food Nutr. 13: 235-241 (2000)
  15. Koppel R, Dvorak V, Zimmerli F. Two tetraplex real-time PCR for the detection and quantification of DNA from eight allergens in food. Eur. Food Res. Technol. 230: 367-374 (2010) https://doi.org/10.1007/s00217-009-1164-3
  16. Korea Customs Service. Major Nuts Import Trends in the Last 10 Years. Available from: http://customs.go.kr/kcshome/cop/bbs/selectBoard.do;jsessionid=WTtvX20GpjkMypjKM67GRNTy5hfRV8gQ2X3bM2J1JhbP4KPz5mDP!-2132147754?bbsId=BBSMSTR_1018&nttId=2266&layoutMenuNo=16222&siteId=mokpo&searchCtgry=&searchCnd=&searchWrd=&bcode=&pcode=&recordCountPerPage=10 Accessed Jan. 25, 2013.
  17. Lee SJ, Yoon HY, Hong KW. A PCR method for rapid detection of peanut ingredients in food. Korean J. Food Sci. Technol. 41: 350-353 (2009)
  18. Mano J, Shigemitsu N, Futo S, Akiyama H, Teshima R, Hino A, Furui S, Kitta K. Real-time PCR array a universal platform for the detection of genetically modified crops and its application in identifying unapproved genetically modified crops in japan. J. Agr. Food Chem. 57: 26-37 (2009) https://doi.org/10.1021/jf802551h
  19. Meyer R. Development and application of DNA analytical methods for the detection of GMOs in food. Food Control. 10: 391-399 (1999) https://doi.org/10.1016/S0956-7135(99)00081-X
  20. Park YC, Kim MR, Shin JH, Kim KH, Lee JH, Cho TY, Lee HJ, Lee SJ, Han SB. Development of PCR method for rapid detection of allergic materials in foods. J. Food Hyg. Saf. 28: 124-129 (2013) https://doi.org/10.13103/JFHS.2013.28.2.124
  21. Rohland N, Hofreiter M. Comparison and optimization of ancient DNA extraction. BioTechniques 42: 343-352 (2007) https://doi.org/10.2144/000112383
  22. Sghaier Z, Ferchichi A, Mohamed C. Genomic DNA extraction method from pearl millet (Pennisetum glaucum) leaves. Afr. J. Biotechnol. 4: 862-866 (2005)
  23. Shin KS, Woo JH, Lim MH, Lee JH. Comparison of the efficiency of different DNA extraction methods on livestock feeds and those raw materials. J. Korean Soc. Int. Agr. 28: 243-251 (2016) https://doi.org/10.12719/KSIA.2016.28.2.243
  24. Suzanne ST, Sarah SC, Shridhar KS, Kenneth HR. Tree nut allergy. Curr. Allergy Asthm. R. 3: 54-61 (2003) https://doi.org/10.1007/s11882-003-0013-x
  25. Verbylaite R, Beisys P, Rimas V, Kuusiene S. Comparison of ten DNA extraction protocols from wood of european aspen (Populus tremula L.). Balt. For. 16: 35-42 (2010)
  26. Volossiouk T, Robb EJ, Nazar RN. Direct DNA Extraction for PCR-Mediated Assays of Soil Organisms. Appl. Environ. Microb. 61: 3972-3976 (1995)
  27. Yano T, Sakai Y, Uchida K, Nakao Y, Ishihata K, Nakano S, Yamada T, Sakai S, Urisu A, Akiyama H, Maitani T. Detection of walnut residues in processed foods by polymerase chain reaction. Biosci. Biotechnol. Biochem. 71: 1793-1796 (2007) https://doi.org/10.1271/bbb.70118