DOI QR코드

DOI QR Code

Pan-serotype reverse transcription loop-mediated isothermal amplification (RT-LAMP) for the rapid detection of foot-and-mouth disease virus

구제역바이러스 신속진단을 위한 pan-serotype reverse transcription loop-mediated isothermal amplification (RT-LAMP) 진단법

  • Lim, Da-Rae (College of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University) ;
  • Park, Yu-Ri (College of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University) ;
  • Park, Sun-Young (College of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University) ;
  • Kim, Hye-Ryung (College of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University) ;
  • Park, Min-Ji (College of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University) ;
  • Ku, Bok-Kyung (Foot-and-Mouth Disease Research Division, Animal and Plant Quarantine Agency) ;
  • Nah, Jin-Ju (Foot-and-Mouth Disease Research Division, Animal and Plant Quarantine Agency) ;
  • Ryoo, So-Yoon (Foot-and-Mouth Disease Research Division, Animal and Plant Quarantine Agency) ;
  • Wee, Sung-Hwan (Foot-and-Mouth Disease Research Division, Animal and Plant Quarantine Agency) ;
  • Jeon, Hyo-Sung (M Monitor Inc.) ;
  • Kim, Ji-Jeong (M Monitor Inc.) ;
  • Jeon, Bo-Young (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Lee, Hyeong-Woo (Institute of Research and Development, Scorpiogen Co., Hankyong National University) ;
  • Park, Choi-Kyu (College of Veterinary Medicine & Animal Disease Intervention Center, Kyungpook National University)
  • 임다래 (경북대학교 수의과대학 & 수의전염병제어센터) ;
  • 박유리 (경북대학교 수의과대학 & 수의전염병제어센터) ;
  • 박선영 (경북대학교 수의과대학 & 수의전염병제어센터) ;
  • 김혜령 (경북대학교 수의과대학 & 수의전염병제어센터) ;
  • 박민지 (경북대학교 수의과대학 & 수의전염병제어센터) ;
  • 구복경 (농림축산검역본부 구제역진단과) ;
  • 나진주 (농림축산검역본부 구제역진단과) ;
  • 유소윤 (농림축산검역본부 구제역진단과) ;
  • 위성환 (농림축산검역본부 구제역진단과) ;
  • 전효성 ((주)엠모니터) ;
  • 김지정 ((주)엠모니터) ;
  • 전보영 (연세대학교 보건과학대학 임상병리학과) ;
  • 이형우 (스콜피오진(주)) ;
  • 박최규 (경북대학교 수의과대학 & 수의전염병제어센터)
  • Received : 2017.12.08
  • Accepted : 2018.01.24
  • Published : 2018.03.30

Abstract

In this study, we developed a sensitive and specific reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for rapid visual detection of foot-and-mouth disease virus (FMDV) circulated in Korea. The RT-LAMP was completed in 40 min at $62^{\circ}C$ and the results of the assay were directly detected by naked eye without any detection process. The assay specifically amplified all 7 serotypes of FMDV RNAs but not amplified other viral and cellular nucleic acids. The sensitivity of the RT-LAMP was $10^2$, $10^3$ and $10^3TCID_{50}/mL$ for serotype O, A and Asia 1 FMDV, respectively, which was comparable to conventional reverse transcription polymerase chain reaction (RT-PCR) and relatively lower than that of real time quantitative RT-PCR (qRT-PCR). Clinical evaluation of the RT-LAMP using different serotypes of Korean and foreign FMDV strains showed a 100% (35/35) agreement with the results of the RT-PCR and qRT-PCR. These results indicated that RT-LAMP assay developed in this study could be a valuable diagnostic method for FMDV monitoring and surveillance.

Keywords

References

  1. Abd El Wahed A, El-Deeb A, El-Tholoth M, Abd El Kader H, Ahmed A, Hassan S, Hoffmann B, Haas B, Shalaby MA, Hufert FT, Weidmann M. 2013. A portable reverse transcription recombinase polymerase amplification assay for rapid detection of foot-and-mouth virus. PLoS One 8: e71642. https://doi.org/10.1371/journal.pone.0071642
  2. Brito BP, Rodriguez LL, Hammond JM, Pinto J, Perez AM. 2017. Review of the global distribution of foot-andmouth disease virus from 2007 to 2014. Transbound Emerg Dis 64: 316-332. https://doi.org/10.1111/tbed.12373
  3. Callahan JD, Brown F, Osorio FA, Sur JH, Kramer E, Long GW, Lubroth J, Ellis SJ, Shoulars KS, Gaffney KL, Rock DL, Nelson WM. 2002. Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J Am Vet Med Assoc 220: 1636-1642. https://doi.org/10.2460/javma.2002.220.1636
  4. Chen HT, Zhang J, Liu YS, Liu XT. 2011a. Detection of foot-and-mouth disease virus RNA by reverse transcription loop-mediated isothermal amplification. Virol J 8: 510. https://doi.org/10.1186/1743-422X-8-510
  5. Chen HT, Zhang J, Liu YS, Liu XT. 2011b. Rapid typing of foot-and-mouth disease serotype Asia 1 by reverse transcription loop-mediated isothermal amplification. Virol J 8: 489. https://doi.org/10.1186/1743-422X-8-489
  6. Cho HS and Park NY. 2005. Detection of canine distemper virus in blood samples by reverse transcription loop-mediated isothermal amplification. J Vet Med B 52: 410-413. https://doi.org/10.1111/j.1439-0450.2005.00886.x
  7. Dhama K, Karthik K, Chakraborty S, Tiwari R, Kapoor S, Kumar A, Thomas P, 2014. Loop-mediated isothermal amplification of DNA (LAMP): a new diagnostic tool lights the world of diagnosis of animal and human pathogens: a review. Pak J Biol Sci 17: 151-166. https://doi.org/10.3923/pjbs.2014.151.166
  8. Ding YZ, Zhou JH, Ma LN, Qi YN, Wei G, Zhang J, Zhang YG. 2014. A reverse transcription loop-mediated isothermal amplification assay to rapidly diagnose foot-and-mouth disease virus C. J Vet Sci 15: 423-426. https://doi.org/10.4142/jvs.2014.15.3.423
  9. Dong HJ, Cho AR, Hahn TW. Cho S. 2014. Development of a multiplex loop-mediated isothermal amplification assay to detect shiga toxin-producing Escherichia coli in cattle. J Vet Sci 15: 317-325. https://doi.org/10.4142/jvs.2014.15.2.317
  10. Dukes JP, King DP, Alexandersen S. 2006. Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus. Arch Virol 151: 1093-1106. https://doi.org/10.1007/s00705-005-0708-5
  11. Farooq U, Latif A, Irshad H, Ullah A, Zahur AB, Naeem K, Khan SUH, Ahmed Z, Rodriguez L, and Smoliga G. 2015. Loop-mediated isothermal amplification (RT-LAMP): a new approach for the detection of foot-and-mouth disease virus and its sero-types in Pakistan. Iranian J Vet Res 16: 331-334.
  12. Goto M, Honda E, Ogura A, Nomoto A, Hanaki K. 2009. Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46: 167-172. https://doi.org/10.2144/000113072
  13. Guan H, Li Z, Yin X, Zhang Y, Gao P, Bai Y, Liu J. 2013. Rapid detection and differentiation of foot and mouth disease virus serotypes by antigen-capture reverse transcription loop-mediated isothermal amplification. Asian J Ani Vet Adv 8: 647-654. https://doi.org/10.3923/ajava.2013.647.654
  14. Howson ELA, Armson B, Madi M, Kasanga CJ, Kandusi S, Sallu R, Chepkwony E, Siddle A, Martin P, Wood J, Mioulet V, King DP, Lembo T, Cleaveland S, Fowler VL. 2015. Evaluation of two lyophilized molecular assays to rapidly detect foot-and-mouth disease virus directly from clinical samples in field settings. Transbound Emerg Dis.
  15. Howson ELA, Kurosaki Y, Yasuda J, Takahashi M, Goto H, Gray AR, Mioulet V, King DP, Fowler VL. 2017. Defining the relative performance of isothermal assays that can be used for rapid and sensitive detection of foot-and-mouth disease virus. J Virol Methods 249: 102-110. https://doi.org/10.1016/j.jviromet.2017.08.013
  16. Hwang ES, Lee TU, Jung EY, Cho HS. 2011. Development of loop-mediated isothermal amplification method for the rapid and sensitive detection of bovine tuberculosis in Korea native cattle. Korean J Vet Serv 34: 333-339. https://doi.org/10.7853/kjvs.2011.34.4.333
  17. Jamel SM, Belsham GJ, 2013. Food-and-mouth disease: past, present and future. Vet Res 44: 116. https://doi.org/10.1186/1297-9716-44-116
  18. Kim EM, Jeon HS, Kim JJ, Kim HJ, Shin YK, Song JY, Yeo SG, Park CK. 2015. Loop-mediated isothermal amplification assay for the rapid detection of swine influenza virus. Korean J Vet Serv 38: 107-116. https://doi.org/10.7853/kjvs.2015.38.2.107
  19. Kim EM, Jeon HS, Kim JJ, Shin YK, Lee YJ, Yeo SG, Park CK. 2016. Uracil-DNA glycosylase-treated reverse transcription loop-mediated isothermal amplification for rapid detection of avian influenza virus preventing carry-over contamination. J Vet Sci 17: 421-425. https://doi.org/10.4142/jvs.2016.17.3.421
  20. Kim T, Ryoo S, Nah JJ, Sagong MG, Lee S, Lee KN, Ko YJ, Park JH, Lee MH, Wee SH, Tark D, Ku BK. 2017. Complete genome sequence of a foot-and-mouth disease virus of serotype O, isolated from Gochang, Republic of Korea, in 2016. Genome Announc 5: e01671-16.
  21. Knowles NJ, Samuel AR. 2003. Molecular epidemiology of foot-and-mouth disease virus. Virus Res 91: 65-80. https://doi.org/10.1016/S0168-1702(02)00260-5
  22. Koh BRD, Kim JM, Sung CM, Ji TK, Na HM, Park SD, Kim YH, Kim ES. 2013. Loop-mediated isothermal amplification assay for differentiation of Mycobacterium bovis and M. tuberculosis. Korean J Vet Serv 36: 79-86. https://doi.org/10.7853/kjvs.2013.36.2.79
  23. Le VP, Lee KN, Nguyen T, Kim SM, Cho IS, Khang DD, hien NB, Quyen DV, Park JH. 2012. A rapid molecular strategy for early detection and characterization of Vietnamese foot-and-mouth disease virus serotypes O, A, and Asia 1. J Virol Methods 180: 1-6. https://doi.org/10.1016/j.jviromet.2011.11.028
  24. Le VP, Lee KN, Nguyen T, Kim SM, Cho IS, Quyen DV, Khang DD, Park JH. 2011. Development of one-step multiplex RT-PCR method for simultaneous detection and differentiation of foot-and-mouth disease virus serotypes O, A, and Asia 1 circulating in Vietnam. J Virol Methods 175: 101-108. https://doi.org/10.1016/j.jviromet.2011.04.027
  25. Madhanmohan M, Nagendrakumar SB, Manikumar K, Yuvaraj S, Parida S, Srinivasan VA. 2013. Development and evaluation of a real-time reverse transcription-loop-mediated isothermal amplification assay for rapid serotyping of foot-and-mouth disease virus. J Virol Methods 187: 195-202. https://doi.org/10.1016/j.jviromet.2012.08.015
  26. Madi M, Hamilton A, Squirrell D, Mioulet V, Evans P, Lee M, King DP. 2012. Rapid detection of foot-and-mouth disease virus using a field-portable nucleic acid extraction and real-time PCR amplification platform. Vet J 193: 67-72. https://doi.org/10.1016/j.tvjl.2011.10.017
  27. Mori Y, Notomi T. 2009. Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases. J Infect Chemother 15: 62-69. https://doi.org/10.1007/s10156-009-0669-9
  28. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Research 28: 63-69. https://doi.org/10.1093/nar/28.12.e63
  29. Office International des Epizooties (OIE), 2016. Foot and Mouth Disease, OIE Terrestrial Mannual, pp. 1-31 (Chapter 2.1.8).
  30. Office International des Epizooties (OIE), 2017. Weekly Disease Information, https://www.oie.int/wahis_2/public/wahid.php/Diseaseinformation/WI.
  31. Park JH, Lee KN, Ko YJ, Kim SM, Lee HS, Shin YK, Sohn HJ, Park JY, Yeh JY, Lee YH, Kim MJ, Joo YS, Yoon H, Yoon SS, Cho IS, Kim B. 2013. Control of foot-and-mouth disease during 2010-2011 epidemic, South Korea. Emerg Infect Dis 19: 655-659. https://doi.org/10.3201/eid1904.121320
  32. Park JH, Tark D, Lee KN, Lee SY, Ko MK, Lee HS, Kim SM, Ko YJ, Seo MG, Chun JE, Lee MH, Kim B. 2016. Novel foot-and-mouth disease virus in Korea, July-August 2014. Clin Exp Vaccine Res 5: 83-87. https://doi.org/10.7774/cevr.2016.5.1.83
  33. Park JY, Park S, Park YR, Kang DY, Kim EM, Jeon HS, Kim JJ, Kim WI, Lee KT, Kim SH, Lee KK, Park CK. 2016. Reverse-transcription loop-mediated isothermal amplification (RT-LAMP) assay for the visual detection of European and North American porcine reproductive and respiratory syndrome viruses. J Virol Methods 237: 10-13. https://doi.org/10.1016/j.jviromet.2016.08.008
  34. Park YR, Kim EM, Han DH, Kang DY, Yeo SG, Park CK. 2017. Reverse transcription loop-mediated isothermal amplification assay for the rapid and simultaneous detection of H5 and other subtypes of avian influenza viruses. Korean J Vet Serv 40: 15-20.
  35. Reid SM, Ferris NP, Hutchings GH, Samuel AR, Knowles NJ. 2000. Primary diagnosis of foot-and-mouth disease by reverse transcription polymerase chain reaction. J Virol Methods 89: 167-176. https://doi.org/10.1016/S0166-0934(00)00213-5
  36. Shao JJ, Chang HY, Zhou GQ, Cong GZ, Du JZ, Lin T, Gao SD, He JJ, Liu XT, Liu JX, Gao JL. 2010. Rapid detection of foot-and-mouth disease virus by reverse transcription loop-mediated isothermal amplification (RT-LAMP). Int J Appl Res Vet Med 8: 133-142.
  37. Shin JH, Sohn HJ, Choi KS, Kwon BJ, Choi CU, Kim JH, Hwang EK, Park JH, Kim JY, Choi SH, Kim OK. 2003. Identification and isolation of foot-and-mouth disease virus from primary suspect cases in Korea in 2000. J Vet Med Sci 65: 1-7. https://doi.org/10.1292/jvms.65.1
  38. Waters RA, Fowler VL, Armson B, Nelson N, Gloster J, Paton DJ, King DP. 2014. Preliminary validation of direct detection of foot-and-mouth disease virus within clinical samples using reverse transcription loop-mediated isothermal amplification coupled with a simple lateral flow device for detection. PLoS One 9: e105630. https://doi.org/10.1371/journal.pone.0105630
  39. Wee SH, Park JY, Joo YS, Lee JH, An SH. 2004. Control measures implemented during the 2002 foot-and-mouth disease outbreak in the Republic of Korea. Vet Rec 154: 598-600. https://doi.org/10.1136/vr.154.19.598
  40. Yamazaki W, Mioulet V, Murray L, Madi M, Haga T, Misawa N, Horii Y, King DP. 2013. Development and evaluation of multiplex RT-LAMP assays for rapid and sensitive detection of foot-and-mouth disease virus. J Virol Methods 192: 18-24. https://doi.org/10.1016/j.jviromet.2013.03.018
  41. Zhang X, Lowe SB, Gooding JJ. 2014. Brief review of monitoring methods for loop-mediated isothermal amplification (LAMP). Biosens and Bioelect 61: 491-499. https://doi.org/10.1016/j.bios.2014.05.039