DOI QR코드

DOI QR Code

Two-year Quaternary Isolation of Gram-positive Bacilli Using MALDI-TOF MS in Positive Blood Culture of a University Hospital

일개 대학병원의 혈액배양에서 MALDI-TOF MS를 이용한 Gram-positive Bacilli의 2년간 분기별 분리율

  • Choi, Jin-Un (Department of Laboratory Medicine, Chonnam National University Hospital) ;
  • Yu, Young-Bin (Department of Biomedical Laboratory Science, College of Medical Sciences, Konyang University) ;
  • Kim, Sang-Ha (Department of Laboratory Medicine, Konyang University Hospital) ;
  • Won, Seungho (Department of Mechanical Engineering, Konyang University) ;
  • Kim, Young-Kwon (Department of Biomedical Laboratory Science, College of Medical Sciences, Konyang University)
  • 최진언 (전남대학교병원 진단검사의학과) ;
  • 유영빈 (건양대학교 의과학대학 임상병리학과) ;
  • 김상하 (건양대학교병원 진단검사의학과) ;
  • 원승호 (건양대학교 기계공학과) ;
  • 김영권 (건양대학교 의과학대학 임상병리학과)
  • Received : 2018.08.18
  • Accepted : 2018.09.09
  • Published : 2018.12.31

Abstract

In this study, Gram-positive bacilli (GPB) were identified by MALDI-TOF MS and analyzed according to the quaternary and microbial strains in the blood culture medium over a two year period at a university hospital. The results were as follows. The overall positive rate of blood culture was 9.97%. In 713 isolated GPB, 410 strains (57.5%) were identified using a microflex MALDI Biotyper. The positive rate of GPB among the blood culture positive bacteria was 8.2%, and the quarterly isolation rate was 9.8% in the third quarter of 2015, 8.7% in the second quarter of 2016, 8.1% in the third quarter of 2016, 8.1% in the first quarter of 2015, 7.9% in the first quarter of 2015, 7.9% in the second quarter of 2015, 6.8% in the first quarter of 2016, and 6.7% in the fourth quarter of 2015. The isolates were Corynebacterium striatum 89 (12.4%), Bacillus cereus 60 (8.4%), Bacillus subtilis 30 (4.2%), Paenibacillus urinalis 29 (4.1%), and Listeria monocytogenes 25 (3.5%). The results of 16S rRNA sequencing of 43 isolates (86.0%) were consistent with those of the other 50 isolates. Five out of the seven unmatched weeks were not identified by MALDI-TOF MS.

본 연구에서는 일개 대학병원에서 2년간 분리된 혈액배양 양성배지에서 MALDI-TOF MS system을 이용하여 Gram-positive bacilli를 동정한 결과를 균종별, 분기별로 분석하였다. Corynebacterium striatum은 총 89균주 중 66균주 (74.2%), Bacillus cereus는 60균주 중 44 균주 (73.3%), Listeria monocytogenes는 25균주 중 25균주 (100%)로 2.0이상의 높은 스코어에서 동정되었다. 미 동정 된 균주는 303균주 중 293균주는 혈액배양에서 1회 분리 균주로 감염균으로서의 의의가 없는 오염 균주로 간주되었다. 감염균으로서 의의가 있는 동일 환자 2회 이상 분리 균주 대상 16S-rRNA sequencing 비교결과 총 50균주 중 43균주가 일치해 86.0% 동정이 가능하였다. 일치하지 않은 7균주 중 5균주는 MALDI-TOF MS로도 동정이 되지 않았다. 결론적으로 혈액배양에서 Gram-positive bacilli가 동정되는 경우, 일차적으로 MALDI-TOF MS를 이용하여 동정해보고 이를 활용한다면 어렵고 비용이 많이 들던 Gram-positive bacilli 동정이 저비용으로 더욱 간편하고 정확해지며, Gram-positive bacilli에 의한 감염 진단에도 도움이 될 것으로 판단된다.

Keywords

References

  1. Funke G, von Graevenitz A, Clarridge J3, Berneard KA. Clinical microbiology of coryneform bacteria. Clin Microbiol Rev. 1997;10:125-159. https://doi.org/10.1128/CMR.10.1.125
  2. Adderso EE, Boudreaux JW, Hayden RT. Infections caused by coryneform bacteria in pediatric oncology patients. Pediatr Infect Dis J. 2008;27:136-141. https://doi.org/10.1097/INF.0b013e31814fab12.
  3. Barberi SC, Almuzara M, Join-Lambert O, Ramirez MS, Famiglietti A, Vay C. Comparison of the Bruker MALDI-TOF mass spectrometry system and conventional phenotypic methods for identification of Gram-positive rods. PLoS One. 2014:9:e106303. https://doi.org/10.1371/journal.pone.0106303.
  4. Watson RS, Carcillo JA, Linde-Zwirble WT, Clermont G, Lidicker J, Angus DC. The pidemiology of severe sepsis in children in the united stated. Am J Respir Crit Care Med. 2003;167:695-701. https://doi.org/10.1164/rccm.200207-682OC.
  5. Holland RD, Wilkes JG, Rafii F, Sutherland JB, Persons CC, Voorhees KJ, et al. Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Commun Mass Spectrom. 1996;10:1227-1237. https://doi.org/10.1002/(SICI)10970231(19960731)10:10<1227::AIDRCM659>3.0.CO;2-6.
  6. Seng P, Drancourt M, Gouriet F, La Scola B, Fournier PE, Rolain JM, et al. Ongoing evolution in bacteriologyl routine identification of bacteria by matrix-assisted laser desorption ionization itme-offlight mass spectrometry. Clin Infect Dis. 2009;49:543-551. https://doi.org/10.1086/600885.
  7. Bizzini A, Durussel C, Bille J, Greub G, Prod'hom G. Performance of matrix-assisted laser desorption ionizationtime of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol. 2010;48: 1549-1554. https://doi.org/10.1128/JCM.01794-09.
  8. Stevenson LG, Drake SK, Shea YR, Zelazny AM, Murray PR. Evaluation of matrix-assisted laser desorption ionization-time of Flight mass spectrometry for identification of clinically important yeast species. J Clin Microbiol. 2010;48:3482-3486. https://doi.org/10.1128/JCM.00687-09.
  9. Park KG, Yu YB, Yook KD, Kim SH, Kim SH, Kim YG. An evaluation of the rapid antimicro bial susceptibility test by VITEK MS and VITEK 2 Systems in blood culture. Korean J Clin Lab Sci. 2017;49:279-284. https://doi.org/10.15324/kjcls.
  10. Carbonnelle E, Grohs P, Jacquier H, Day N, Tenza S, Dewailly A, et al. Robustness of two MALDI-TOF mass spectrometry systems for bacterial identification. J Microbiol Methods. 2012;89:133-136. https://di.org/10.1016/j.mimet.2012.03.003.
  11. Dubois D, Grare M, Prere MF, Segonds C, Marty N, Oswald E. Performances of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for rapid identification of bacteria in routine clinical microbiology. J Clin Microbiol. 2012;50:2568-2576. https://doi.org/10.1128/JCM.00343-12.
  12. Ahn GY, Jang SJ, Lee SH, Jeong OY, Bidur Prasad Chaulagain BP, Moon DS, et al. Trends of the species and antimicrobial susceptibility of microorganisms isolated from blood cultures of patients. Korean J Clin Microbiol. 2006;9:42-50.
  13. Navas M, Pincus DH, Wilkey K, LaSalvia M, Wilson D, Procop GW, et al. Identification of aerobic Gram-positive bacilli by use of Vitek MS. J Clin Microbiol. 2014;52:1274-1277. https://doi.org/10.1128/JCM.03483-13.
  14. Kim NH, Hwang JH, Song KH, Choe PG, Park WB, Kim ES, et al. Changes in antimicrobial susceptibility of blood isolates in a university hospital in South Korea, 1998-2010. Infect Chemother. 2012;44:275-281. https://doi.org/10.3947/ic.2012.44.4.275.
  15. Woo PC, Lau SK, Teng JL, Tse H, Yuen KY. Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories. Clin Microbiol Infect. 2008;14:908-934. https://doi.org/10.1111/j.1469-0691.2008.02070.x.
  16. Bruins MJ, Bloembergen P, Ruijs GJ, Wolfhagen MJ. Identification and susceptibility testing of enterobacteriaceae and pseudomonas aeruginosa by direct inoculation from pos itive BACTEC blood culture bottles into VITEK 2. J Clin Microbiol. 2004;42:7-11. https://doi.org/10.1128/JCM.42.1.7-11.2004.
  17. Shin KS, Son YI, Kim TD, Hong SB, Park JS, Kim SH, et al. Secular trends of species and antimicrobial resistance of blood isolates in a tertiary medical center for ten years: 2003-2012. Biomedical Science Letters. 2014;20:2288-7415.
  18. Choi SK, Han MH, Bae CW, Choi YS. A case of paenibacillus-induced sepsis complicated with pneumotocele in a very low birth weight infant. Neonatal Med. 2014;21:69-73. https://doi.org/10.5385/nm.2014.21.1.69.
  19. Renom F, Gomila M, Garau M, Gallegos M.D.C, Guerrero D, Lalucat J, et al. Respira tory infection by Corynebacterium striatum: epidemiological and clinical determinants. New Micorbes New Infect. 2014;2:106-114. https://doi.org/10.1002/nmi2.48.
  20. Severo CB, Guazzelli LS, Barra MB, Hochhegger B, Severo LC. Multiple pulmonary nodules caused by Corynebacterium striatum in an immunocompetent patient. Rev Inst Med Trop Sao Paulo. 2014;56:89-91. https://doi.org/10.1590/S0036-46652014000100015.
  21. Levesque S, Dufresne PJ, Soualhine H, Doming M-C, Bekal S, Lefebvre B, et al. A side by side compariton of Bruker Biotyper and VITEK MS Utility of MALDI-TOF MS technolo gy for microorganism identification in a public health reference laboratory. PLoS ONE. 2015;10:e0144878. https://doi.org/10.1371/journal.pone.0144878.

Cited by

  1. 임상검체에서 분리된 Ochrobactrum anthropi의 효과적인 동정 vol.52, pp.3, 2018, https://doi.org/10.15324/kjcls.2020.52.3.221