미생물학회지 (Korean Journal of Microbiology)

  • 제53권3호
  • /
  • Pages.227-229
  • /
  • 2017
  • /
  • 0440-2413(pISSN)
  • /
  • 2383-9902(eISSN)
한국미생물학회 (The Microbiological Society of Korea)
권호 표지
DOI QR코드

DOI QR Code

계통분류학적 연구를 위한 우포늪에서 분리된 박테리아 Spirosoma rigui KCTC 12531T의 완전한 게놈 서열

Complete genome sequence of Spirosoma rigui KCTC 12531T, a bacterium isolated from fresh water from the Woopo wetland for taxonomic study

  • 김동욱 (서울여자대학교 자연과학대학 생명환경공학과) ;
  • 김주영 (서울여자대학교 자연과학대학 생명환경공학과) ;
  • 김수정 (서울여자대학교 자연과학대학 생명환경공학과) ;
  • 김민지 (서울여자대학교 자연과학대학 생명환경공학과) ;
  • 이주연 (서울여자대학교 자연과학대학 생명환경공학과) ;
  • 김명겸 (서울여자대학교 자연과학대학 생명환경공학과)
  • Kim, Dong-Uk (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University) ;
  • Kim, Ju-Young (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University) ;
  • Kim, Su Jeong (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University) ;
  • Kim, Min Ji (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University) ;
  • Lee, Ju Yeon (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University) ;
  • Kim, Myung Kyum (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
  • 투고 : 2017.07.03
  • 심사 : 2017.09.20
  • 발행 : 2017.09.30
PDF 다운로드
⟨ 이전 논문 다음 논문 ⟩

초록

이 연구에서는 우포늪의 깨끗한 물에서 분리된 Spirosoma rigui KCTC $12531^T$의 완전한 게놈 서열을 분석하였다. 이 게놈은 G + C 함량이 54.4%인 5,828,404 bp으로 구성되어 있고 4,774개의 유전자와 4,647개의 단백질 코딩 유전자, 9개의 rRNA 유전자 그리고 43개의 tRNA 유전자 및 73개의 위유전자(pseudogene)를 포함하고 있다.

Spirosoma rigui KCTC $12531^T$ was isolated from fresh water from the Woopo wetland, Korea. In this study, we report the complete genome sequence of a bacterium Spirosoma rigui KCTC $12531^T$, its complete genome sequence was obtained using the PacBio RS II platform. The genome comprised of 5,828,404 bp with the G + C content of 54.4%, the genome included 4,774 genes were predicted, among them, 4,647 genes are protein-coding genes.

키워드

참고문헌

  1. Baik, K.S., Kim, M.S., Park, S.C., Lee, D.W., Lee, S.D., Ka, J.O., Choi, S.K., and Seong, C.N. 2007. Spirosoma rigui sp. nov., isolated from fresh water. Int. J. Syst. Evol. Microbiol. 57, 2870-2873. https://doi.org/10.1099/ijs.0.65302-0
  2. Baik, K.S., Park, S.C., Kim, E.M., Bae, K.S., Ahn, J.H., Ka, J.O., Chun, J., and Seong, C.N. 2008. Diversity of bacterial community in freshwater of Woopo wetland. J. Microbiol. 46, 647-655. https://doi.org/10.1007/s12275-008-0135-x
  3. Grant, J.R. and Stothard, P. 2008. The CGView Server: A comparative genomics tool for circular genomes. Nucleic. Acids. Res. 36, W181-W184. https://doi.org/10.1093/nar/gkn179
  4. Garrity, G.M. and Holt, J.G. 2001. The road map to the manual. pp. 119-166. In Boone, D.R., Castenholz, R.W., and Garrity, G.M. (eds.), Bergey's Manual of Systematic Bacteriology, 2nd ed. Springer, New York, USA.
  5. Kim, M.K., Kang, M.S., Srinivasan, S., Lee, D.H., Lee, S.Y., and Jung, H.Y. 2017. Complete genome sequence of Hymenobacter sedentarius DG5B T , a bacterium resistant to gamma radiation. Mol. Cell. Toxicol. 13, 199-205. https://doi.org/10.1007/s13273-017-0021-x
  6. Larkin, J.M. and Borrall, R. 1984. Family I. Spirosomaceae Larkin and Borrall 1978, 595AL. pp. 125-126. In Krieg, N.R. and Holt, J.G. (eds.), Bergey's Manual of Systematic Bacteriology, Williams & Wilkins, Baltimore, USA.
  7. Tatusova T., DiCuccio, M., Badretdin, A., Chetvernin, V., Ciufo, S., and Li, W. 2013. Prokaryotic Genome Annotation Pipeline The NCBI Handbook [Internet] 2nd ed. pp. 1-23. National Center for Biotechnology Information, Bethesda, MD, USA.