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Engineering CotA Laccase for Acidic pH Stability Using Bacillus subtilis Spore Display

  • Sheng, Silu (New Jersey Institute of Technology, Department of Chemistry and Environmental Science, University Heights) ;
  • Jia, Han (New Jersey Institute of Technology, Department of Chemistry and Environmental Science, University Heights) ;
  • Topiol, Sidney (Center for Healthcare Innovation, Stevens Institute of Technology) ;
  • Farinas, Edgardo T. (New Jersey Institute of Technology, Department of Chemistry and Environmental Science, University Heights)
  • Received : 2016.08.10
  • Accepted : 2016.10.24
  • Published : 2017.03.28

Abstract

Bacillus subtilis spores can be used for protein display to engineer protein properties. This method overcomes viability and protein-folding concerns associated with traditional protein display methods. Spores remain viable under extreme conditions and the genotype/phenotype connection remains intact. In addition, the natural sporulation process eliminates protein-folding concerns that are coupled to the target protein traveling through cell membranes. Furthermore, ATP-dependent chaperones are present to assist in protein folding. CotA was optimized as a whole-cell biocatalyst immobilized in an inert matrix of the spore. In general, proteins that are immobilized have advantages in biocatalysis. For example, the protein can be easily removed from the reaction and it is more stable. The aim is to improve the pH stability using spore display. The maximum activity of CotA is between pH 4 and 5 for the substrate ABTS (ABTS = diammonium 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate). However, the activity dramatically decreases at pH 4. The activity is not significantly altered at pH 5. A library of approximately 3,000 clones was screened. A E498G variant was identified to have a half-life of inactivation ($t_{1/2}$) at pH 4 that was 24.8 times greater compared with wt-CotA. In a previous investigation, a CotA library was screened for organic solvent resistance and a T480A mutant was found. Consequently, T480A/E498G-CotA was constructed and the $t_{1/2}$ was 62.1 times greater than wt-CotA. Finally, E498G-CotA and T480A/E498G-CotA yielded 3.7- and 5.3-fold more product than did wt-CotA after recycling the biocatalyst seven times over 42 h.

Keywords

References

  1. Boa W, O'Malley MD, Whetten R, Sederoff RR. 1993. A laccase associated with lignification in loblolly pine xylem. Science 260: 672-674. https://doi.org/10.1126/science.260.5108.672
  2. Rochefort D, Leech D, Bourbonnais R. 2004. Electron transfer mediator systems for bleaching of paper pulp. Green Chem. 6: 14-24. https://doi.org/10.1039/b311898n
  3. Mayer AM, Staples RC. 2002. Laccase: new functions for an old enzyme. Phytochemistry 60: 551-565. https://doi.org/10.1016/S0031-9422(02)00171-1
  4. Claus H. 2004. Laccases: structure, reactions, distribution. Micron 35: 93-96. https://doi.org/10.1016/j.micron.2003.10.029
  5. Rochefort D, Bourbonnais R, Leech D, Renaud S, Paice M. 2002. Electrochemical oxidation of transition metal-based mediators for pulp delignification. J. Electrochem. Soc. 149: D15-D20. https://doi.org/10.1149/1.1427077
  6. Fernandez-Fernandez M, Sanroman MT, Moldes D. 2013. Recent developments and applications of immobilized laccase. Biotechnol. Adv. 31: 1808-1825. https://doi.org/10.1016/j.biotechadv.2012.02.013
  7. Pan JG, Choi SK, Jung HC, Kim EJ. 2014. Display of native proteins on Bacillus subtilis spores. FEMS Microbiol. Lett. 358: 209-217. https://doi.org/10.1111/1574-6968.12558
  8. Pepper LR, Yong KC, Boder ET, Shusta EV. 2008. A decade of yeast surface display technology: where are we now? Comb. Chem. High Throughput Screen. 11: 127-134. https://doi.org/10.2174/138620708783744516
  9. Winter G, Griffiths AD, Hawkins RE, Hoogenboom HR. 1994. Making antibodies by phage display technology. Annu. Rev. Immunol. 12: 433-455. https://doi.org/10.1146/annurev.iy.12.040194.002245
  10. Bershtein S, Tawfik DS. 2008. Advances in laboratory evolution of enzymes. Curr. Opin. Chem. Biol. 12: 151-158. https://doi.org/10.1016/j.cbpa.2008.01.027
  11. Amstutz P, Forrer P, Zahnd C, Pluckthun A. 2001. In vitro display technologies: novel developments and applications. Curr. Opin. Biotechnol. 12: 400-405. https://doi.org/10.1016/S0958-1669(00)00234-2
  12. Forrer P, Jung S, Pluckthun A. 1999. Beyond binding: using phage display to select for structure, folding and enzymatic activity in proteins. Curr. Opin. Struct. Biol. 9: 514-520. https://doi.org/10.1016/S0959-440X(99)80073-6
  13. Bessette PH, Aslund F, Beckwith J, Georgiou G. 1999. Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm. Proc. Natl. Acad. Sci. USA 96: 13703-13708. https://doi.org/10.1073/pnas.96.24.13703
  14. Harvey BR, Georgiou G, Hayhurst A, Jeong KJ, Iverson BL, Rogers GK. 2004. Anchored periplasmic expression, a versatile technology for the isolation of high-affinity antibodies from Escherichia coli-expressed libraries. Proc. Natl. Acad. Sci. USA 101: 9193-9198. https://doi.org/10.1073/pnas.0400187101
  15. Driks A. 1999. Bacillus subtilis spore coat. Microbiol. Mol. Biol. Rev. 63: 1-20.
  16. Kim J, Schumann W. 2009. Display of proteins on Bacillus subtilis endospores. Cell. Mol. Life Sci. 66: 3127-3136. https://doi.org/10.1007/s00018-009-0067-6
  17. Lee SY, Choi JH, Xu Z. 2003. Microbial cell-surface display. Trends Biotechnol. 21: 45-52. https://doi.org/10.1016/S0167-7799(02)00006-9
  18. Isticato R, Cangiano G, Tran HT, Ciabattini A, Medaglini D, Oggioni MR, et al. 2001. Surface display of recombinant proteins on Bacillus subtilis spores. J. Bacteriol. 183: 6294-6301. https://doi.org/10.1128/JB.183.21.6294-6301.2001
  19. Mauriello EM, Duc le H, Isticato R, Cangiano G, Hong HA, De Felice M, et al. 2004. Display of heterologous antigens on the Bacillus subtilis spore coat using CotC as a fusion partner. Vaccine 22: 1177-1187. https://doi.org/10.1016/j.vaccine.2003.09.031
  20. Seok JK, Jung HC, Pan JG. 2007. Transgalactosylation in a water-solvent biphasic reaction system with ${\beta}$-galactosidase displayed on the surfaces of Bacillus subtilis spores. Appl. Environ. Microbiol. 73: 2251-2256. https://doi.org/10.1128/AEM.01489-06
  21. Martins LO, Soares CM, Pereira MM, Teixeira M, Costa T, Jones GH, Henriques AO. 2002. Molecular and biochemical characterization of a highly stable bacterial laccase that occurs as a structural component of the Bacillus subtilis endospore coat. J. Biol. Chem. 277: 18849-18859. https://doi.org/10.1074/jbc.M200827200
  22. Gupta N, Farinas ET. 2010. Directed evolution of CotA laccase for increased substrate specificity using Bacillus subtilis spores. Protein Eng. Des. Sel. 23: 679-682. https://doi.org/10.1093/protein/gzq036
  23. Jia H, Lee FS, Farinas ET. 2014. Bacillus subtilis spore display of laccase for evolution under extreme conditions of high concentrations of organic solvent. ACS Comb. Sci. 16: 665-669. https://doi.org/10.1021/co500113t
  24. Hullo MF, Moszer I, Danchin A, Martin-Verstraete I. 2001. CotA of Bacillus subtilis is a copper-dependent laccase. J. Bacteriol. 183: 5426-5430. https://doi.org/10.1128/JB.183.18.5426-5430.2001
  25. Enguita FJ, Marcal D, Martins LO, Grenha R, Henriques AO, Lindley PF, Carrondo MA. 2004. Substrate and dioxygen binding to the endospore coat laccase from Bacillus subtilis. J. Biol. Chem. 279: 23472-23476. https://doi.org/10.1074/jbc.M314000200
  26. Enguita FJ, Martins LO, Henriques AO, Carrondo MA. 2003. Crystal structure of a bacterial endospore coat component. A laccase with enhanced thermostability properties. J. Biol. Chem. 278: 19416-19425. https://doi.org/10.1074/jbc.M301251200
  27. Futterer O, Angelov A, Liesegang H, Gottschalk G, Schleper C, Schepers B, et al. 2004. Genome sequence of Picrophilus torridus and its implications for life around pH 0. Proc. Natl. Acad. Sci. USA 101: 9091-9096. https://doi.org/10.1073/pnas.0401356101
  28. Sharma A, Kawarabayasi Y, Satyanarayana T. 2012. Acidophilic bacteria and archaea: acid stable biocatalysts and their potential applications. Extremophiles 16: 1-19. https://doi.org/10.1007/s00792-011-0402-3
  29. Zhao H, Moore JC, Volkov AA, Arnold FH. 1999. Methods for optimizing industrial enzymes by directed evolution, pp. 597-604. In Demain AL, Davies JE (eds.). Manual of Industrial Microbiology and Biotechnology, 2nd Ed. ASM Press, Washington.
  30. Nicholson WL, Setlow P. 1990. Sporulation, germination and outgrowth, pp. 391-450. In Harwood CR, Cutting SM (eds.). Molecular Biological Methods for Bacillus. John Wiley & Sons Ltd., West Sussex.
  31. Torres-Salas P, Mate DM, Ghazi I, Plou FJ, Ballesteros AO, Alcalde M. 2013. Widening the pH activity profile of a fungal laccase by directed evolution. Chembiochem. 14: 934-937. https://doi.org/10.1002/cbic.201300102
  32. Bento I, Silva CS, Chen Z, Martins LO, Lindley PF, Soares CM. 2010. Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer. BMC Struct. Biol. 10: 28. https://doi.org/10.1186/1472-6807-10-28
  33. Chen Z, Durao P, Silva CS, Pereira MM, Todorovic S, Hildebrandt P, et al. 2010. The role of Glu498 in the dioxygen reactivity of CotA-laccase from Bacillus subtilis. Dalton Trans. 39: 2875-2882. https://doi.org/10.1039/b922734b
  34. Xu F. 1996. Oxidation of phenols, anilines, and benzenethiols by fungal laccases: correlation between activity and redox potentials as well as halide inhibition. Biochemistry 35: 7608-7614. https://doi.org/10.1021/bi952971a
  35. Xu F, Shin W, Brown SH, Wahleithner JA, Sundaram UM, Solomon EI. 1996. A study of a series of recombinant fungal laccases and bilirubin oxidase that exhibit significant differences in redox potential, substrate specificity, and stability. Biochim. Biophys. Acta 1292: 303-311. https://doi.org/10.1016/0167-4838(95)00210-3

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