참고문헌
- Bechtold, N., and Pelletier, G. (1998). In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Methods Mol. Biol. 82, 259-266.
- Birnbaum, K., Jung, J.W., Wang, J.Y., Lambert, G.M., Hirst, J.A., Galbraith, D.W., and Benfey, P.N. (2005). Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat. Methods 2, 615-619. https://doi.org/10.1038/nmeth0805-615
- Boyes, D.C., Zayed, A.M., Ascenzi, R., McCaskill, A.J., Hoffman, N.E., Davis, K.R.,, and Gorlach, J. (2001). Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13, 1499-1510. https://doi.org/10.1105/tpc.13.7.1499
- Chen, J., Yi, Q., Song, Q., Gu, Y., Zhang, J., Hu, Y., Liu, H., Liu, Y., Yu, G., and Huang, Y. (2015). A highly efficient maize nucellus protoplast system for transient gene expression and studying programmed cell death-related processes. Plant Cell Rep. 34, 1239-1251. https://doi.org/10.1007/s00299-015-1783-z
- Choi, Y., Gehring, M., Johnson, L., Hannon, M., Harada, J.J., Goldberg, R.B., Jacobsen, S.E., and Fischer, R.L. (2002). DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 110, 33-42. https://doi.org/10.1016/S0092-8674(02)00807-3
- Cocking, E.C. (1960). A method for the isolation of plant protoplasts and vacuoles. Nature 187, 962-963. https://doi.org/10.1038/187962a0
- Deal, R.B., and Henikoff, S. (2010). A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Dev. Cell 18, 1030-1040. https://doi.org/10.1016/j.devcel.2010.05.013
- Deal, R.B., and Henikoff, S. (2011). The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana. Nat. Protoc. 6, 56-68. https://doi.org/10.1038/nprot.2010.175
- Faraco, M., Di Sansebastiano, G.P., Spelt, K., Koes, R.E., and Quattrocchio, F.M. (2011). One protoplast is not the other! Plant Physiol. 156, 474-478. https://doi.org/10.1104/pp.111.173708
- Fischer, R., and Hain, R. (1995). Tobacco protoplast transformation and use for functional analysis of newly isolated genes and gene constructs. Methods Cell. Biol. 50, 401-410. https://doi.org/10.1016/S0091-679X(08)61046-8
- Gehring, M., Bubb, K.L., and Henikoff, S. (2009). Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324, 1447-1451. https://doi.org/10.1126/science.1171609
- Gronlund, J.T., Eyres, A., Kumar, S., Buchanan-Wollaston, V. and Gifford, M.L. (2012). Cell specific analysis of Arabidopsis leaves using fluorescence activated cell sorting. J. Vis. Exp. 4, pii: 4214.
- Harholt, J., Suttangkakul, A., and Vibe Scheller, H. (2010). Biosynthesis of pectin. Plant Physiol. 153, 384-395. https://doi.org/10.1104/pp.110.156588
- Henry, G.L., Davis, F.P., Picard, S., and Eddy, S.R. (2012). Cell type-specific genomics of Drosophila neurons. Nucleic Acids Res. 40, 9691-9704. https://doi.org/10.1093/nar/gks671
- Hong, S.-Y., Seo, P.J., Cho, S.-H., and Park, C.-M. (2012). Preparation of leaf mesophyll protoplasts for transient gene expression in Brachypodium distachyon. J. Plant Biol. 55, 390-397. https://doi.org/10.1007/s12374-012-0159-y
- Hoshino, Y., Murata, N., and Shinoda, K. (2006). Isolation of individual egg cells and zygotes in Alstroemeria followed by manual selection with a microcapillary-connected micropump. Ann Bot 97, 1139-1144. https://doi.org/10.1093/aob/mcl072
- Hsieh, T.F., Ibarra, C.A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R.L., and Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. Science 324, 1451-1454. https://doi.org/10.1126/science.1172417
- Hsieh, T.F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M.J., Hashimoto, M., Kirkbride, R.C., Harada, J.J., Zilberman, D., et al. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm. Proc. Natl. Acad. Sci. USA 108, 1755-1762. https://doi.org/10.1073/pnas.1019273108
- Ibarra, C.A., Feng, X., Schoft, V.K., Hsieh, T.F., Uzawa, R., Rodrigues, J.A., Zemach, A., Chumak, N., Machlicova, A., Nishimura, T., et al. (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science 337, 1360-1364. https://doi.org/10.1126/science.1224839
- Im, J.H., and Yoo, S.D. (2014). Transient expression in Arabidopsis leaf mesophyll protoplast system for cell-based functional analysis of MAPK cascades signaling. Methods Mol. Biol. 1171, 3-12. https://doi.org/10.1007/978-1-4939-0922-3_1
- Kelley, D.R., and Gasser, C.S. (2009). Ovule development: genetic trends and evolutionary considerations. Sex Plant Reprod. 22, 229-234. https://doi.org/10.1007/s00497-009-0107-2
- Kim, M., Ohr, H., Lee, J.W., Hyun, Y., Fischer, R.L., and Choi, Y. (2008). Temporal and spatial downregulation of Arabidopsis MET1 activity results in global DNA hypomethylation and developmental defects. Mol. Cells 26, 611-615.
- Lenhard, M., Bohnert, A., Jurgens, G., and Laux, T. (2001). Termination of stem cell maintenance in Arabidopsis floral meristems by interactions between WUSCHEL and AGAMOUS. Cell 105, 805-814. https://doi.org/10.1016/S0092-8674(01)00390-7
- Long, J.A., Moan, E.I., Medford, J.I., and Barton, M.K. (1996). A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379, 66-69. https://doi.org/10.1038/379066a0
- Moreno-Romero, J., Jiang, H., Santos-Gonzalez, J., and Kohler, C. (2016). Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm. EMBO J. 35, 1298-1311. https://doi.org/10.15252/embj.201593534
- Ohyama, K., Gamborg, O.L., and Miller, R.A. (1972). Isolation and properties of deoxyribonucleic acid from protoplasts of cell suspension cultures of Ammi visnaga and Carrot (Daucus carota). Plant Physiol. 50, 319-321. https://doi.org/10.1104/pp.50.3.319
- Pillitteri, L.J., Bemis, S.M., Shpak, E.D., and Torii, K.U. (2007). Haploinsufficiency after successive loss of signaling reveals a role for ERECTA-family genes in Arabidopsis ovule development. Development 134, 3099-3109. https://doi.org/10.1242/dev.004788
- Rose, A., and Meier, I. (2001). A domain unique to plant RanGAP is responsible for its targeting to the plant nuclear rim. Proc. Natl. Acad. Sci. USA 98, 15377-15382. https://doi.org/10.1073/pnas.261459698
- Schapire, A.L., and Lois, L.M. (2016). A simplified and rapid method for the isolation and transfection of Arabidopsis leaf mesophyll protoplasts for large-scale applications. Methods Mol. Biol. 1363, 79-88. https://doi.org/10.1007/978-1-4939-3115-6_8
- Schmidt, A., Schmid, M.W., and Grossniklaus, U. (2012). Analysis of plant germline development by high-throughput RNA profiling: technical advances and new insights. Plant J. 70, 18-29. https://doi.org/10.1111/j.1365-313X.2012.04897.x
- Sheen, J. (1993). Protein phosphatase activity is required for light-inducible gene expression in maize. EMBO J. 12, 3497-3505.
- Sheen, J. (2001). Signal transduction in maize and Arabidopsis mesophyll protoplasts. Plant Physiol. 127, 1466-1475. https://doi.org/10.1104/pp.010820
- Shepard, J.F., and Totten, R.E. (1977). Mesophyll cell protoplasts of potato: isolation, proliferation, and plant regeneration. Plant Physiol. 60, 313-316. https://doi.org/10.1104/pp.60.2.313
- Slotkin, R.K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J.D., Feijo, J.A., and Martienssen, R.A. (2009). Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136, 461-472. https://doi.org/10.1016/j.cell.2008.12.038
- Steffen, J.G., Kang, I.H., Macfarlane, J., and Drews, G.N. (2007). Identification of genes expressed in the Arabidopsis female gametophyte. Plant J. 51, 281-292. https://doi.org/10.1111/j.1365-313X.2007.03137.x
- Truernit, E., and Haseloff, J. (2007). A role for KNAT class II genes in root development. Plant Signal. Behav. 2, 10-12. https://doi.org/10.4161/psb.2.1.3604
- Weinhofer, I., Hehenberger, E., Roszak, P., Hennig, L., and Kohler, C. (2010). H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation. PLoS Genet. 6.
- Wu, F.H., Shen, S.C., Lee, L.Y., Lee, S.H., Chan, M.T., and Lin, C.S. (2009). Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method. Plant Methods 5, 16. https://doi.org/10.1186/1746-4811-5-16
- Wuest, S.E., Vijverberg, K., Schmidt, A., Weiss, M., Gheyselinck, J., Lohr, M., Wellmer, F., Rahnenfuhrer, J., von Mering, C., and Grossniklaus, U. (2010). Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol. 20, 506-512. https://doi.org/10.1016/j.cub.2010.01.051
- Yadegari, R., and Drews, G.N. (2004). Female gametophyte development. Plant Cell 16 Suppl, S133-141. https://doi.org/10.1105/tpc.018192
- Yoo, S.D., Cho, Y.H., and Sheen, J. (2007). Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2, 1565-1572. https://doi.org/10.1038/nprot.2007.199
- Zhai, Z., Jung, H.I., and Vatamaniuk, O.K. (2009). Isolation of protoplasts from tissues of 14-day-old seedlings of Arabidopsis thaliana. J. Vis. Exp. 17, pii: 1149.
- Zhang, Y., Su, J., Duan, S., Ao, Y., Dai, J., Liu, J., Wang, P., Li, Y., Liu, B., Feng, D., et al. (2011). A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods 7, 30. https://doi.org/10.1186/1746-4811-7-30
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- DEMETER-mediated DNA Demethylation in Gamete Companion Cells and the Endosperm, and its Possible Role in Embryo Development in Arabidopsis vol.63, pp.5, 2016, https://doi.org/10.1007/s12374-020-09258-2
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