한국패류학회지 (The Korean Journal of Malacology)

한국패류학회 (The Malacological Society of Korea)
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동남아시아 4개국 두족류의 분류 및 계통분류학적 연구

Classification and Phylogenetic Studies of Cephalopods from four countries of South-East Asia

  • 황희주 (순천향대학교 자연과학대학 생명시스템학과) ;
  • 강세원 (순천향대학교 자연과학대학 생명시스템학과) ;
  • 박소영 (순천향대학교 자연과학대학 생명시스템학과) ;
  • 정종민 (순천향대학교 자연과학대학 생명시스템학과) ;
  • 송대권 (순천향대학교 자연과학대학 생명시스템학과) ;
  • 박형춘 (순천향대학교 인문과학대학 중어중문학과) ;
  • 박홍석 ((주)지앤시바이오) ;
  • 한연수 (전남대학교 농업생명과학대학 식물생명공학부) ;
  • 이준상 (강원대학교 환경연구소) ;
  • 이용석 (순천향대학교 자연과학대학 생명시스템학과)
  • Hwang, Hee Ju (Department of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University) ;
  • Kang, Se Won (Department of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University) ;
  • Park, So Young (Department of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University) ;
  • Chung, Jong Min (Department of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University) ;
  • Song, Dae Kwon (Department of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University) ;
  • Park, Hyeongchun (Department of Chinese Language and Literature, College of Humanities, Soonchunhyang University) ;
  • Park, Hong Seog (Research Institute, GnC BIO Co., LTD.) ;
  • Han, Yeon Soo (Division of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University) ;
  • Lee, Jun-Sang (Institute of Environmental Research, Kangwon National University) ;
  • Lee, Yong Seok (Department of Life Science and Biotechnology, College of Natural Sciences, Soonchunhyang University)
  • 투고 : 2016.03.18
  • 심사 : 2016.03.31
  • 발행 : 2016.03.31
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초록

In this study, an attempt has been made to analyze the morphology of Cephalopods distributed in Korea and collected samples from South-East Asian countries including Thailand, Indonesia, Vietnam, and China. A phylogenetic analysis was performed using the mitochondrial gene, Cytochrome c oxidase subunit I (COI) to understand the genetic divergences of the species and validate their origins. For achieving the objectives, samples were collected directly from Thailand Hat Yai, Songkhla, Indonesia Medan, Vietnam Ho Chi Minh, and Vung Tau in August 2015 and from China in September 2015. A total of 23 species of Cephalopods were identified falling under three orders, four familyies and nine genus. The species were distributed under Order: Octopoda (1 family, 3 genus, and 9 species), Order: Sepiolioda (1 family, 2 genus, and 8 species), and Order Teuthoidea (2 family, 4 genus, and 6 species). 23 species which is 1 family 3 genus 9 species in Octopoda, 1 family 2 genus 8 species in Sepiolioda, 2 family 4 genus 6 species in Teuthoidea. Phylogenetic analysis using COI gene was conducted for 18 species. For the remaining 5 species sequencing results showed severe variation and hence were not considered further. The COI phylogenetic analysis for the 18 species of Cephalopods were found consistent with the morphological identification. The excluded species will be subjected for a further detailed analysis.

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참고문헌

  1. Altschul, S.F., Gish, W., Miller, W., Meyers, E.W., and Lipman, D.J. (1990) Basic Local Alignment Search Tool. Journal of Molecular Biology, 215: 403-410. https://doi.org/10.1016/S0022-2836(05)80360-2
  2. Bergman, A. M. (2013) Phylogeography of Sepioteuthis lessoniana (the bigfin reef squid) and Uroteuthis duvauceli (the Indian squid). Honors Theses, Southern Illinois University, Carbondale, United States of America.
  3. Bonnaud L., Saihi A. and Boucher-Rodoni R. (2002) Are 28S Rdna And 18S Rdna Informative For Cephalopod Phylogeny? Bulletin Of Marine Science, 71(1): 197-208
  4. Braid, H.E., McBride, P.D., Bolstad, K.S.R. (2014) Molecular phylogenetic analysis of the squid family Mastigoteuthidae (Mollusca, Cephalopoda) based on three mitochondrial genes. Hydrobiologia, 725(1): 145-164. https://doi.org/10.1007/s10750-013-1775-3
  5. Cheng R., Zheng X., Ma Y., Li Q. (2013) The complete mitochondrial genomes of two octopods Cistopus chinensis and Cistopus taiwanicus: revealing the phylogenetic position of the genus Cistopus within the order Octopoda. PLoS One, 8: e84216. https://doi.org/10.1371/journal.pone.0084216
  6. Cheng, R., Yang, J., Lin, X., Zheng, X., Li, Q. (2012). "Determination of the complete mitochondrial DNA sequence of Octopus minor." Molecular Biology Reports, 39(4): 3461-3470. https://doi.org/10.1007/s11033-011-1118-2
  7. Ewing, B., and Green, P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Research, 8: 186-194. https://doi.org/10.1101/gr.8.3.186
  8. Ewing, B., Hillier, L., Wendl, M.C., and Green, P. (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Research, 8: 175-185. https://doi.org/10.1101/gr.8.3.175
  9. Furuya H. (2006) Three new species of dicyemid mesozoans (phylum Dicyemida) from Amphioctopus fangsiao (Mollusca: Cephalopoda), with comments on the occurrence patterns of dicyemids. Zoological Science, 23(1): 105-119. https://doi.org/10.2108/zsj.23.105
  10. Guo B., Wang W., Qi P., Wu C., Chen Y., Lv Z. (2016) Complete mitochondrial genome of the needle cuttlefish Sepia aculeata (Sepioidea, Sepiidae). Mitochondrial DNA, 27(1): 67-68. https://doi.org/10.3109/19401736.2013.873903
  11. Hebert, P.D., Ratnasingham, S., and deWaard, J.R. (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings Biology Sciences, 270 Suppl 1: S96-99. https://doi.org/10.1098/rsbl.2003.0025
  12. Higgins, D.G., and Sharp, P.M. (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene, 73: 237-244. https://doi.org/10.1016/0378-1119(88)90330-7
  13. Hsiao C., Shen K.N., Ching T.Y., Wang Y.H., Ye J.J., Tsai S.Y., Wu S.C., Chen C.H., Wang C.H. (2015) The complete mitochondrial genome of the cryptic "lineage A" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific. Mitochondrial DNA: 1-2.
  14. Huang, X., and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Research, 9: 868-877. https://doi.org/10.1101/gr.9.9.868
  15. Jereb, P. & Roper, C.F.E. (2005) Cephalopods of the World. An annotated and Illustrated Catalogue of Cephalopod Species Known to Date. Volume 1 Chambered Nautiluses and Sepioida. Food and Agriculture Organization of the United Nations Rome. pp. 1-262, pls. i-ix.
  16. Jereb, P. & Roper, C.F.E. (2010) Cephalopods of the World. An annotated and Illustrated Catalogue of Cephalopod Species Known to Date. Volume 2 Myopsid and Oegopsid Squids. Food and Agriculture Organization of the United Nations Rome. pp. 1-605, pls. i-x.
  17. Jereb, P., Roper, C.F.E., Norman, M.D. & Finn, J.K. (2014) Cephalopods of the World. An annotated and Illustrated Catalogue of Cephalopod Species Known to Date. Volume 2 Octopods and Vampire Squids. Food and Agriculture Organization of the United Nations Rome. pp. 1-352, pls. i-xi.
  18. Kang J.H., Kim Y.K., Park J.Y., An C.M., Jun J.C. (2012) Development of microsatellite markers to genetically differentiate populations of Octopus minor from Korea and China. Molecular Biology Reports, 39(8): 8277-8286. https://doi.org/10.1007/s11033-012-1675-z
  19. kang, S.W., Hwang, H.J., Park, S.Y., Wang, T.H., Park, E.B., Lee, T.H., Hwang, U.W., Lee, J.-S., Park, H.S., Han, Y.S., Lim, C.E., Kim, S., and Lee, Y.S. (2014) Mollusks Sequence Database: Version II. Korean Journal of Malacology, 30(4): 429-431. https://doi.org/10.9710/kjm.2014.30.4.429
  20. Kang, S.W., Park, S.Y., Patnaik, B.B., Hwang, H.J., Kim, C., Kim, S., Lee, J.S., Han, Y.S., and Lee, Y.S. (2015) Construction of PANM Database (Protostome DB) for rapid annotation of NGS data in Mollusks. Korean Journal of Malacology, 31(3): 243-247. https://doi.org/10.9710/kjm.2015.31.3.243
  21. Kawashima Y., Nishihara H., Akasaki T., Nikaido M., Tsuchiya K., Segawa S., Okada N. (2013) The complete mitochondrial genomes of deep-sea squid (Bathyteuthis abyssicola), bob-tail squid (Semirossia patagonica) and four giant cuttlefish (Sepia apama, S. latimanus, S. lycidas and S. pharaonis), and their application to the phylogenetic analysis of Decapodiformes. Molecular Phylogenetics and Evolution, 69(3): 980-993. https://doi.org/10.1016/j.ympev.2013.06.007
  22. Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30: 2725-2729. https://doi.org/10.1093/molbev/mst197
  23. Lee, Y.S., Jo, Y.-H., Kim, D.-S., Kim, D.-W., Kim, M.-Y., Choi, S.-H., Yon, J.-O., Byun, I.-S., Kang, B.-R., Jeong, K.-H., and Park, H.-S. (2004) Construction of BLAST Server for Mollusks. Korean Journal of Malacology, 20(2): 165-169.
  24. Lindgren A.R., Pankey M.S., Hochberg F.G., Oakley T.H. (2012) A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology, 12: 129. https://doi.org/10.1186/1471-2148-12-129
  25. Norman, M.D. & Lu, C.C. (2000) Preliminary Checklist of the Cephalopods the South China Sea. The Raffles Bulletin of Zoology, Supplement No. 8: 539-567.
  26. Norman, M.D. (2000) Cephalopods; A world Guide. Frankfurt, Germany, IKAN Publishing. pp. 1-320.
  27. Okutani, T. (1995) Cuttlefish and Squids of the World in Color. Publication for the 30th Anniversary of the Foundation of National Cooperative Association of Squid Processors. pp. 1-185. [in Japanese and English].
  28. Okutani, T. (2000) Marine Mollusks in Japan. Tokai Univ., Press. Tokyo. (Ed.). pp. 1-1172. [in Japanese and English].
  29. Okutani, T. (2005) Past, Present and Future Studies on Cephalopod Diversity in Tropical West Pacific. Phuket Marine biological Center Research Bulletin, 66: 39-50.
  30. Okutani, T., Tagawa, M., Horikawa H. & Fish, M. (1987) Cephalopods from Continental Shelf and Slope around Japan. Japan Fisheries Resource Conservation Association. pp.1-194. [in Japanese and English].
  31. Shen K.N., Yen T.C., Chen C.H., Ye J.J., Hsiao C.D. (2014) The complete mitochondrial genome of the cryptic "lineage B" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific. Mitochondrial DNA: 1-2.
  32. Speiser D.I., Pankey M., Zaharoff A.K., Battelle B.A., Bracken-Grissom H.D., Breinholt J.W., Bybee, S.M., Cronin, T.W., Garm, A., Lindgren, A.R., Patel, N.H., Porter, M.L., Protas, M.E., Rivera, A.S., Serb, J.M., Zigler, K.S., Crandall, K.A., Oakley, T.H. (2014) Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics, 15: 350. https://doi.org/10.1186/s12859-014-0350-x
  33. Sreeja, V., Bijukumar, A. & Norman, M.D. (2012) First report of Amphioctopus neglectus (Nateewathana & Norman, 1999) and A. rex (Nateewathana & Norman, 1999) (Mollusca: Cephalopoda) from the Indian coast. Molluscan Research, 32(1): 43-49.
  34. Wang W., Guo B., Li J., Qi P., Wu C. (2014) Complete mitochondrial genome of the common cuttlefish Sepia pharaonis (Sepioidea, Sepiidae). Mitochondrial DNA, 25: 198-199. https://doi.org/10.3109/19401736.2013.796462
  35. Wang W., Guo B., Li J., Wang H., Qi P., Lv Z., Wu C. (2015) Complete mitochondrial genome of the spineless cuttlefish Sepiella inermis (Sepioidea, Sepiidae). Mitochondrial DNA, 26: 151-152. https://doi.org/10.3109/19401736.2013.819498
  36. Yang J.M., Sun G.H., Zheng X.D., Ren L.H., Wang W.J., Li G.R., Sun B.C. (2015) Genetic differentiation of Octopus minor (Mollusca, Cephalopoda) off the northern coast of China as revealed by amplified fragment length polymorphisms. Genet. Mol. Res., 14: 15616-15623. https://doi.org/10.4238/2015.December.1.13
  37. Zhang X, Zheng X, Ma Y, Li Q (2015) Complete mitochondrial genome and phylogenetic relationship analyses of Amphioctopus aegina (Gray, 1849) (Cephalopoda: Octopodidae). Mitochondrial DNA, : 1-2.

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