References
- Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997 . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. https://doi.org/10.1093/nar/25.17.3389
- Benito D, Lozano C, Gomez-Sanz E, Zarazaga M, Torres C. 2013. Detection of methicillin-susceptible Staphylococcus aureus ST398 and ST133 strains in gut microbiota of healthy humans in Spain. Microb. Ecol. 66: 105-111. https://doi.org/10.1007/s00248-013-0240-1
- Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23: 673-679. https://doi.org/10.1093/bioinformatics/btm009
- Disz T, Akhter S, Cuevas D, Olson R, Overbeek R, Vonstein V, et al. 2010. Accessing the SEED genome databases via Web services API: tools for programmers. BMC Bioinformatics 11: 319. https://doi.org/10.1186/1471-2105-11-319
- Enright MC, Day NP, Davies CE, Peacock SJ, Spratt BG. 2000. Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. J. Clin. Microbiol. 38: 1008-1015.
- Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. 2007. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int. J. Syst. Evol. Microbiol. 57: 81-91. https://doi.org/10.1099/ijs.0.64483-0
- Hung WC, Takano T, Higuchi W, Iwao Y, Khokhlova O, Teng LJ, Yamamoto T. 2012. Comparative genomics of community-acquired ST59 methicillin-resistant Staphylococcus aureus in Taiwan: novel mobile resistance structures with IS1216V. PLoS One 7: e46987. https://doi.org/10.1371/journal.pone.0046987
- Jones TF, Kellum ME, Porter SS, Bell M, Schaffner W. 2002. An outbreak of community-acquired foodborne illness caused by methicillin-resistant Staphylococcus aureus. Emerg. Infect. Dis. 8: 82-84. https://doi.org/10.3201/eid0801.010174
- Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, et al. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62: 716-721. https://doi.org/10.1099/ijs.0.038075-0
- Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, et al. 2012. Multilocus sequence typing of total-genome-sequenced bacteria. J. Clin. Microbiol. 50: 1355-1361. https://doi.org/10.1128/JCM.06094-11
- Lee JH, Yi H, Chun J. 2011. rRNASelector: a computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries. J. Microbiol. 49: 689-691. https://doi.org/10.1007/s12275-011-1213-z
- Lim SK, Nam HM, Jang GC, Lee HS, Jung SC, Kwak HS. 2012. The first detection of methicillin-resistant Staphylococcus aureus ST398 in pigs in Korea. Vet. Microbiol. 155: 88-92. https://doi.org/10.1016/j.vetmic.2011.08.011
- Mason WJ, Blevins JS, Beenken K, Wibowo N, Ojha N, Smeltzer MS. 2001. Multiplex PCR protocol for the diagnosis of staphylococcal infection. J. Clin. Microbiol. 39: 3332-3338. https://doi.org/10.1128/JCM.39.9.3332-3338.2001
- Moon DC, Tamang MD, Nam HM, Jeong JH, Jang GC, Jung SC, et al. 2015. Identification of livestock-associated methicillin-resistant Staphylococcus aureus isolates in Korea and molecular comparison between isolates from animal carcasses and slaughterhouse workers. Foodborne Pathog. Dis. 12: 327-334. https://doi.org/10.1089/fpd.2014.1868
- Pantosti A. 2012. Methicillin-resistant Staphylococcus aureus associated with animals and its relevance to human health. Front. Microbiol. 3: 127. https://doi.org/10.3389/fmicb.2012.00127
- Tatusov RL, Koonin EV, Lipman DJ. 1997. A genomic perspective on protein families. Science 278: 631-637. https://doi.org/10.1126/science.278.5338.631
- Verkade E, Kluytmans J. 2014. Livestock-associated Staphylococcus aureus CC398: animal reservoirs and human infections. Infect. Genet. Evol. 21: 523-530. https://doi.org/10.1016/j.meegid.2013.02.013
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