KOREAN JOURNAL OF CROP SCIENCE (한국작물학회지)

The Korean Society of Crop Science (한국작물학회)
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Proteome Profiling Unfurl Differential Expressed Proteins from Various Explants in Platycodon Grandiflorum

  • Kim, Hye-Rim (Dept. of Crop Science, Chungbuk National University) ;
  • Kwon, Soo-Jeong (Dept. of Food Nutrition and Cookery, Woosong College) ;
  • Roy, Swapan Kumar (Dept. of Crop Science, Chungbuk National University) ;
  • Cho, Seong-Woo (Rice Research Division, National Institute of Crop Science RDA) ;
  • Kim, Hag-Hyun (Dept. of Food Nutrition and Cookery, Woosong College) ;
  • Cho, Kab-Yeon (Dept. of Food Nutrition and Cookery, Woosong College) ;
  • Boo, Hee-Ock (WellPhyto Co. Ltd., BI Center, GIST) ;
  • Woo, Sun-Hee (Dept. of Crop Science, Chungbuk National University)
  • Received : 2014.12.13
  • Accepted : 2015.02.28
  • Published : 2015.03.31
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Abstract

Platycodon grandiflorum, commonly known as Doraji in Korea, has a wide range of pharmacologic properties, such as reducing adiposity and hyperlipidemia, and antiatherosclerotic effects. However, the mechanisms underlying these effects remain unclear. In order to profile proteins from the nodal segment, callus, root and shoot, high throughput proteome approach was executed in the present study. Two dimensional gels stained with CBB, a total of 84 differential expressed proteins were confirmed out of 839 protein spots using image analysis by Progenesis SameSpot software. Out of total differential expressed spots, 58 differential expressed protein spots (${\geq}$ 2-fold) were analyzed using MASCOT search engine according to the similarity of sequences with previously characterized proteins along with the UniProt database. Out of 58 differential expressed protein, 32 protein spots were up-regulated such as ribulose-1,5-bisphosphate carboxylase, endoplasmic oxidoreductin-1, heat stress transcription factor A3, RNA pseudourine synthase 4, cysteine proteinase, GntR family transcriptional regulator, E3 xyloglucan 6-xylosyltransferase, while 26 differential protein spots were down-regulated such as L-ascorbate oxidase precursor, late embryogenesis abundant protein D-34, putative SCO1 protein, oxygen-evolving enhancer protein 3. However, frequency distribution of identified proteins using iProClass databases, and assignment by function based on gene ontology revealed that the identified proteins from the explants were mainly associated with the nucleic acid binding (17%), transferase activity (14%) and ion binding (12%). In that way, the exclusive protein profile may provide insight clues for better understanding the characteristics of proteins and metabolic activity in various explants of the economically important medicinal plant Platycodon grandiflorum.

Keywords

References

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