DOI QR코드

DOI QR Code

Molecular Characterization of Chicken Toll-like Receptor 7

  • Chai, Han-Ha (Animal Genome & Bioinformatics Division, National Institute of Animal Science, RDA) ;
  • Suk, Jae Eun (BIOVIA Korea) ;
  • Lim, Dajeong (Animal Genome & Bioinformatics Division, National Institute of Animal Science, RDA) ;
  • Lee, Kyung-Tai (Animal Genome & Bioinformatics Division, National Institute of Animal Science, RDA) ;
  • Choe, Changyong (Animal Genetic Resources Research Center, National Institute of Animal Science, RDA) ;
  • Cho, Yong-Min (Animal Genome & Bioinformatics Division, National Institute of Animal Science, RDA)
  • Received : 2015.11.02
  • Accepted : 2015.11.25
  • Published : 2015.12.31

Abstract

Toll-like receptor 7 (TLR7) is critical for the triggering of innate immune response by recognizing the conserved molecular patterns of single-stranded RNA (ssRNA) viruses and mediated antigenic adaptive immunity. To understand how TLR7 distinguish pathogen-derived molecular patterns from the host self, it is essential to be able to identify TLR7 receptor interaction interfaces, such as active sites or R848-agonist binding sites. The functional interfaces of TLR7 can serve as targets for structure-based drug design in studying the TLR7 receptor's structure-function relationship. In contrast to mammalian TLR7, chicken TLR7 (chTLR7) is unknown for its important biological function. Therefore, it has been targeted to mediate contrasting evolutionary patterns of positive selection into non-synonymous SNPs across eleven species using TLR7 conservation patterns (evolutionary conserved and class-specific trace residues), where protein sequence differences to the TLR7 receptors of interest record mutation that have passed positive section across the species. In this study, we characterized the Lys609 residue on chTLR7-ECD homodimer interfaces to reflect the current tendency of evolving positive selection to be transfer into a stabilization direction of the R848-agonist/chTLR7-ECDs complex under the phylogenetically variable position across species and we suggest a potential indicator for contrasting evolutionary patterns of both the species TLR-ECDs.

Keywords

References

  1. Areal H, Abrantes J, Esteves PJ (2011) Signatures of positive selection in toll-like receptor (TLR) genes in mammals. BMC Evol Biol 11:368. https://doi.org/10.1186/1471-2148-11-368
  2. Chen R, Weng ZP (2002) Docking unbounded proteins using shape complementarity, desolvation, and electrostatics. Proteins 47:281-294. https://doi.org/10.1002/prot.10092
  3. Cornelissen JB, Vervelde L, Post J, Rebel JM (2013): Differences in highly pathogenic avian influenza viral pathogenesis and associated early inflammatory res- ponse in chickens and ducks. Avian Pathol 42:347-364. https://doi.org/10.1080/03079457.2013.807325
  4. Fornuskova A, Vinkler M, Pages M, Galan M, Jousselin E, Cerqueira F, Morand S, Charbonnel N, Bryja J, Cossen JF (2013) Contrasted evolutionary histories of two toll-like receptors (Tlr4 and Tlr7) in wild rodents (MURINAE). BMC Evol Biol 13:194. https://doi.org/10.1186/1471-2148-13-194
  5. Gentile F, Deriu MA, Licandro G, Prunotto A, Danani A, Tuszynski, JA (2015) Structure based modeling of small molecules binding to the TLR7 by atomic level simulations. Molecules 20:8316-8340. https://doi.org/10.3390/molecules20058316
  6. Heil F, Hemmi H, Ampenberger F, Kirschning C, Akira S, Lipford G, Wagner H, Bauer S (2004) Speciesspecific recognition of single stranded RNA via toll-like receptor 7 and 8. Sciences 303: 1526-1529. https://doi.org/10.1126/science.1093620
  7. Hughes AL, Piontkivska H (2008) Functional diver-sification of the toll-like receptor gene family. Immunogenetics 60: 249-256. https://doi.org/10.1007/s00251-008-0283-5
  8. Iqbal M, Philibin VJ, Smith AL (2005): Expression patterns of chicken Toll-like receptor mRNA in tissues, immune cell subsets and cell lines. Vet Immunol Immunopathol 104:117-127. https://doi.org/10.1016/j.vetimm.2004.11.003
  9. Kubarenko AV, Ranjan S, Colak E, George J, Frank M, Weber AN (2010) Comparative modeling and functional analysis of toll-like receptor ligand-recognition domains. Protein Sci 19:558-569.
  10. MacDonald MR, Xia J, Smith AL, Magor KE (2008): The duck toll like receptor 7: genomic organization, expression, and function. Mol Immunol 45:2055-2061. https://doi.org/10.1016/j.molimm.2007.10.018
  11. Matsushima N, Tanaka T, Enkhbayar P, Mikami N, Taga M, Yamada K, Kuroki Y (2007): Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors. BMC Genomics 8:124. https://doi.org/10.1186/1471-2164-8-124
  12. Philbin VJ, Iqbal M, Boyd Y, Goodchild MJ, Beal RK, Bumstead N, Young J, Smith AL (2005): Identification and characterization of a functional, alternatively spliced Toll-like receptor 7 (TLR7) and genomic disruption of TLR8 in chickens. Immunology 114:507-521. https://doi.org/10.1111/j.1365-2567.2005.02125.x
  13. Qi Y, Chen S, Zhao Q, Wang M, Jia R, Zhu D, Liu M, Liu F, Chen X, Cheng A (2015): Molecular cloning, tissue distribution, and immune function of goose TLR7. Immunology Letters 163:135-142. https://doi.org/10.1016/j.imlet.2014.11.017
  14. Sali A, Blundell TL (1993) Comparative protein modeling by satisfaction of spatial restraints. J Mol Biol 234:779-815. https://doi.org/10.1006/jmbi.1993.1626
  15. Vinkler M, Bainova, H, Bryja J (2014): Protein evolution of Toll-like receptors 4, 5, and 7 within Galloanserae birds. Genet Sel Evol 46:72-84. https://doi.org/10.1186/s12711-014-0072-6
  16. Wei T, Gong J, Rossel SC, Jamitzky F, Heckl WM, Stark RW (2011) A leucine-rich repeat assembly approach for homology modeling of the human TLR5-10 and mouse TLR11-13 ectodomains. J Mol Model 17:27-36. https://doi.org/10.1007/s00894-010-0697-5
  17. Wu G, Robertson DH, Brooks CL III, Vieth M (2003) Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm. J Comp Chem 24:1549. https://doi.org/10.1002/jcc.10306
  18. Xiong D, Song L, Pan Z, Chen X, Geng S, Jiao, X (2015): Identification and immune functional characterization of pigeon TLR7. Int J Mol Sci 16:8364-8351. https://doi.org/10.3390/ijms16048364
  19. Yilmaz A, Shen S, Adelson DL, Xavier S, Zhu JJ (2005): Identification and sequence analysis of chicken toll-like receptors. Immunogenetics 56:743-753. https://doi.org/10.1007/s00251-004-0740-8
  20. Yu H, Jin H, Sun L, Zhang L, Sun G, Wang Z, Yu Y (2013) Toll-like receptor 7 agonists: chemical feature based pharmacophore identification and molecular docking studies. PLoS one 8:e56514. https://doi.org/10.1371/journal.pone.0056514