References
- Ley, Ruth E., Daniel A. Peterson, and Jeffrey I. Gordon, "Ecological and evolutionary forces shaping microbial diversity in the human intestine", Cell 124.4(2006): 837-848. https://doi.org/10.1016/j.cell.2006.02.017
- Clemente, Jose C., et al., "The impact of the gut microbiota on human health: an integrative view", Cell 148.6 (2012): 1258-1270. https://doi.org/10.1016/j.cell.2012.01.035
- Morgan, Xochitl C., and Curtis Huttenhower, "Human microbiome analysis", PLoS computational biology 8. 12(2012): e1002808. https://doi.org/10.1371/journal.pcbi.1002808
- Pruesse, Elmar, Jorg Peplies, and Frank Oliver Glockner, "SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes", Bioinformatics 28.14(2012): 1823-1829. https://doi.org/10.1093/bioinformatics/bts252
- Needleman, Saul B., and Christian D. Wunsch, "A general method applicable to the search for similarities in the amino acid sequence of two proteins", Journal of molecular biology 48.3(1970): 443-453. https://doi.org/10.1016/0022-2836(70)90057-4
- Thompson, Julie D., Toby Gibson, and Des G. Higgins, "Multiple sequence alignment using ClustalW and ClustalX", Current protocols in bioinformatics(2002): 2-3.
- Li, Weizhong, and Adam Godzik, "Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences", Bioinformatics 22.13(2006): 1658-1659. https://doi.org/10.1093/bioinformatics/btl158
- Edgar, Robert C, "Search and clustering orders of magnitude faster than BLAST", Bioinformatics 26.19(2010): 2460-2461. https://doi.org/10.1093/bioinformatics/btq461
- Sun, Yijun, et al., "ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences", Nucleic acids research 37.10(2009): e76-e76. https://doi.org/10.1093/nar/gkp285
- Cai, Yunpeng, and Yijun Sun, "ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time", Nucleic acids research 39.14(2011): e95-e95. https://doi.org/10.1093/nar/gkr349
- Schloss, Patrick D., et al., "Introducing mothur: opensource, platform-independent, community-supported software for describing and comparing microbial communities", Applied and environmental microbiology, 75.23(2009): 7537-7541. https://doi.org/10.1128/AEM.01541-09
- Schloss, Patrick D., and Jo Handelsman, "Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness", Applied and environmental microbiology 71.3(2005): 1501-1506. https://doi.org/10.1128/AEM.71.3.1501-1506.2005
- Schloss, Patrick D., and Jo Handelsman, "Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures", Applied and environmental microbiology 72.10(2006): 6773-6779. https://doi.org/10.1128/AEM.00474-06
- Hwang, Kyuin, et al., "CLUSTOM: A Novel Method for Clustering 16S rRNA Next Generation Sequences by Overlap Minimization", PloS one 8.5(2013): e62623. https://doi.org/10.1371/journal.pone.0062623
- Lee, Jae-Hak, et al., "TBC: a clustering algorithm based on prokaryotic taxonomy", The Journal of Microbiology 50.2(2012): 181-185. https://doi.org/10.1007/s12275-012-1214-6
- Altschul, Stephen F., et al., "Gapped BLAST and PSIBLAST: a new generation of protein database search programs", Nucleic acids research 25.17(1997): 3389-3402. https://doi.org/10.1093/nar/25.17.3389
- Quince, Christopher, et al., "Removing noise from pyrosequenced amplicons", BMC bioinformatics 12.1 (2011): 38. https://doi.org/10.1186/1471-2105-12-38
- 김세정, 이병한, 윤성로, "유전체 데이터 분석을 위한 군집화 결과 평가방법 비교 및 분석", 대한전자공학회 추계학술대회 논문집(2013): 820-822.
- Press, William H., et al., "Numerical recipes", (1990).