References
- Amann, R.I., W. Ludwig and K. Schleifer. 1995. Phylogenetic Identification and In Situ Detection of Individual Microbial Cells without Cultivation. Microbiological Reviews 59: 143-169.
- Bollmann, A., K. Lewis and S.S. Epstein. 2007. Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Applied and Environmental Microbiology 73: 6386-6390. https://doi.org/10.1128/AEM.01309-07
- Chokesajjawatee, N., Y.G. Zo and R.R. Colwell. 2008. Determination of Clonality and Relatedness of Vibrio cholerae Isolates by Genomic Fingerprinting, Using Long-Range Repetitive Element Sequence-Based PCR. Applied and Environmental Microbiology 74: 5392-5401. https://doi.org/10.1128/AEM.00151-08
-
Cilliers, F.J., R.M. Warren, J.H. Hauman, I.J.F. Wiid and P.D. Van Helden. 1997. Oligonucleotide
$(GTG)_5$ as an Epidemiological Tool in the Study of Nontuberculous Mycobacteria. Journal of Clinical Microbiology 35: 1545-1549. - Cole, J.R., Q. Wang, E. Cardenas, J. Fish, B. Chai, R.J. Farris, A.S. Kulam-Syed-Mohideen, D.M. McGarrell, T. Marsh, G.M. Garrity and J.M. Tiedje. 2009. The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucleic Acids Research 37: 141-145.
- Davis, K.E., S.J. Joseph and P.H. Janssen. 2005. Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Applied and Environmental Microbiology 71: 823-834.
- Evans, J.D. 2003. Diverse origins of tetracycline resistance in the honey bee bacterial pathogen Paenibacillus larvae. Journal of invertebrate Pathology 33: 46-50.
- Fairbairn, D.J. and B.A. Law. 1986. Purification and characterization of the extracellular proteinase of Pseudomonas fluorescences NCDO 2085. Journal of Dairy Research 53: 457-466. https://doi.org/10.1017/S0022029900025073
- Friedrich, A.B., H. Merkert, T. Fendert, J. Hacker, P. Proksch and U. Hentschel. 1999. Microbial diversity in the marine sponge Aplysina cavernicola (formerly Verongia cavernicola) analyzed by fluorescence in situ hybridization (FISH). Marine Biology 134: 461-470. https://doi.org/10.1007/s002270050562
- Garrity, G.M., T.G. Lilburn, J.R. Cole, S.H. Harrison, J. Euzeby and B.J. Tindall. 2007. Taxonomic outline of the bacteria and archaea, release 7.7. Michigan State University Board of Trustees, East Lansing, MI, USA.
- Gigliarelli, L., L. Lucentini, A. Palomba, G. Sgaravizzi, H. Lancioni, L. Lanfaloni, P. Willenz, E. Gaino and F. Panara, 2008. Applications of PCR-RFLPs for differentiating two freshwater sponges: Ephydatia fluviatilis and Ephydatia mulleri. Hydrobiologia 605: 265-269. https://doi.org/10.1007/s10750-008-9327-y
- Grozdanov, L. and U. Hentschel. 2007. An environmental genomics perspective on the diversity and function of marine sponge-associated microbiota. Current Opinion in Microbiology 10: 215-220. https://doi.org/10.1016/j.mib.2007.05.012
- Handelsman, J. 2004. Metagenomics: Application of genomics to uncultured microorganisms. Microbiology and Molecular Biology Reviews 68: 669-685. https://doi.org/10.1128/MMBR.68.4.669-685.2004
- Hentschel, U., K.M. Usher and M.W. Taylor. 2006. Marine sponges as microbial fermenters. FEMS Microbiology Ecology 55: 167-177. https://doi.org/10.1111/j.1574-6941.2005.00046.x
- Jung, Y.J., Y.C. Joung and T.S. Ahn. 2011. Characterization of Actinomyces Isolated from Freshwater Sponges in Lake Baikal. Korean Journal of Microbiol. 47: 130-136.
- Kozhova, O.M. and L.R. Izmest'eva, 1998. Lake Baikal - Evolution and Biodiversity, pp. 3-80, Backhuys Publishers, Leiden, The Netherlands.
- Lee, G.H., M.S. Bae, S.H. Park, H.G. Song and T.S. Ahn. 2004. Sole-Carbon-Source Utilization Patterns of Oligotrophic and Psychrotrophic Bacteria Isolated from Lake Baikal. Korean Journal of Microbiol. 40: 248-253.
- Liesack, W., H. Weyland and E. Stackebrandt. 1991. Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microbial Ecology 21: 191-198. https://doi.org/10.1007/BF02539153
- Makevitt, A.L., S. Bajaksouzian, J.D. Klinger and D.E. Woods. 1989. Purification and characterization of an extracellular protease from Pseudomonas cepacia. Infection and Immunity 57: 771-778.
- Masuda, Y. 2009. Studies on the taxonomy and distribution of freshwater sponges in Lake Baikal. Progress in Molecular and Subcellular Biology 47: 81-110. https://doi.org/10.1007/978-3-540-88552-8_4
- Meyer, J.M. and M.A. Abdallah. 1978. The Fluorescent Pigment of Pseudomonas fluorescens : Biosynthesis, Purification and Physicochemical Properties. Journal of General Microbiology 107: 319-328. https://doi.org/10.1099/00221287-107-2-319
- Miyazaki, N. 1997. Animal community, environment and phylogeny in Lake Bakial. Otsuchi Marine Research Center, Ocean Research Institute, The University of Tokyo.
- Müller, W., E.G. Zahn, R.K. Kurelec, B.C. Lucu, I. Mller and G. Uhlenbruck. 1981. Lectin, a possible basis for symbiosis between bacteria and sponges. Journal of Bacteriology 145: 548-558.
- Mu, X., C. Yang and S. Wang. 2005. Allelopathy of Pseudomonas fluorescens: a preliminary study. The Journal of Applied Ecology 16(4): 778-779.
- Oldak, E. and E.A. Trafny. 2005. Secretion of Proteases by Pseudomonas aeruginosa Biofilms Exposed to Ciprofloxacin. Antimicrobial Agents and Chemotherapy 49: 3281-3288. https://doi.org/10.1128/AAC.49.8.3281-3288.2005
- Park, J.S., C.J. Sim and K.D. An. 2009. Community Structure of Bacteria Associated with Two Marine Sponges from Jeju Island Based on 16S rDNA-DGGE Profiles. Korean Journal of Microbiol. 45: 170-176.
- Parfenova, V.V., I.A. Terkina, T.I. Kostornova, I.G. Nikulina, V.I. Chernykh and E.A. Maksimova. 2008. Microbial community of freshwater sponges in Lake Baikal. Biology Bulletin 35: 374-379. https://doi.org/10.1134/S1062359008040079
- Seo, E.Y., M.R. Kim and T.S. Ahn. 2007. Community Analysis of the Bacteria in Sponges of Lake Baikal by FISH Method. Korean Journal of Microbiol. 43: 14-18.
- Stainer, R.Y., N.J. Palleroni and M. Doudoroff. 1966. The aerobic pseudomonads : A taxonomic study. Journal of General Microbiology 43: 159-271. https://doi.org/10.1099/00221287-43-2-159
- Tzipori, S.R., D. Walt and U. Zuckermann. 2007. Development and Evaluation of an Innovative System for the Concentration and Quantitative Detection of CCL Pathogens in Drinking Water. National Center For Enviromental Research.
- Wang, Q., G.M. Garrity, J.M. Tiedje and J.R. Cole. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 73: 5261-5267. https://doi.org/10.1128/AEM.00062-07
- Wiens, M., P. Wrede, V.A. Grebenjuk, O.V. Kaluzhnaya, S.I. Belikov, H.C. Schruder and W.E. Muller. 2009. Towards a molecular systematics of the Lake Baikal/Lake Tuva sponges. Progress in Molecular and Subcellular Biology 47: 111-144. https://doi.org/10.1007/978-3-540-88552-8_5
- Webster, N.S., K.J. Wilson, L.L. Blackall and R.T. Hill. 2001. Phylogenetic Diversity of Bacteria Associated with the Marine Sponge Rhopaloeides odorabile. Applied and Environmental Microbiology 67: 434-444. https://doi.org/10.1128/AEM.67.1.434-444.2001