References
- Bell, M.J., Wall, E., Russell, G., Simm, G., and Stott, A.W. 2011. The effect of improving cow productivity, fertility, and longevity on the global warming potential of dairy systems. J. Dairy Sci. 94, 3662-3678. https://doi.org/10.3168/jds.2010-4023
- Cani, P.D., Bibiloni, R., Knauf, C., Waget, A., Neyrinck, A.M., Delzenne, N.M., and Burcelin, R. 2008. Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice. Diabetes 57, 1470-1481. https://doi.org/10.2337/db07-1403
- Caporaso, J.G., Lauber, C.L., Walters, W.A., Berg-Lyons, D., Huntley, J., Fierer, N., Owens, S.M., Betley, J., Fraser, L., Bauer, M., and et al. 2012. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624. https://doi.org/10.1038/ismej.2012.8
- Edrington, T.S., Fox, W.E., Callaway, T.R., Anderson, R.C., Hoffman, D.W., and Nisbet, D.J. 2009. Pathogen prevalence and influence of composted dairy manure application on antimicrobial resistance profiles of commensal soil bacteria. Foodborne Pathog. Dis. 6, 217-224. https://doi.org/10.1089/fpd.2008.0184
- Fan, C., Li, S., Li, C., Ma, S., Zou, L., and Wu, Q. 2012. Isolation, identification and cellulase production of a cellulolytic bacterium from intestines of giant panda. Wei Sheng Wu Xue Bao 52, 1113-1121.
- Floch, M.H. 2010. Fecal bacteriotherapy, fecal transplant, and the microbiome. J. Clin. Gastroenterol. 44, 529-530. https://doi.org/10.1097/MCG.0b013e3181e1d6e2
- Foster, E.K. 2003. METASTATS: behavioral science statistics for Microsoft Windows and the HP49G programmable calculator. Behav. Res. Methods Instrum. Comput. 35, 325-328. https://doi.org/10.3758/BF03202560
- Fox, J.G., Feng, Y., Theve, E.J., Raczynski, A.R., Fiala, J.L., Doernte, A.L., Williams, M., McFaline, J.L., Essigmann, J.M., Schauer, D.B., and et al. 2010. Gut microbes define liver cancer risk in mice exposed to chemical and viral transgenic hepatocarcinogens. Gut 59, 88-97. https://doi.org/10.1136/gut.2009.183749
- Greenblum, S., Turnbaugh, P.J., and Borenstein, E. 2012. Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc. Natl. Acad. Sci. USA 109, 594-599. https://doi.org/10.1073/pnas.1116053109
- Ihara, Y., Hyodo, H., Sukegawa, S., Murakami, H., and Morimatsu, F. 2013. Isolation, characterization, and effect of administration in vivo, a novel probiotic strain from pig feces. Anim. Sci. J. 84, 434-441. https://doi.org/10.1111/asj.12020
- Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S.K., and Schloss, P.D. 2013. Development of a dual-index sequencing strategy and MiSeq Illumina sequencing platform. Appl. Environ. Microbiol. 79, 5112-5120. https://doi.org/10.1128/AEM.01043-13
- Li, Y., Kundu, P., Seow, S.W., de Matos, C.T., Aronsson, L., Chin, K.C., Karre, K., Pettersson, S., and Greicius, G. 2012. Gut microbiota accelerate tumor growth via c-jun and STAT3 phosphorylation in APCMin/+ mice. Carcinogenesis 33, 1231-1238. https://doi.org/10.1093/carcin/bgs137
- Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., Lesniewski, R.A., Oakley, B.B., Parks, D.H., Robinson, C.J., and et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541. https://doi.org/10.1128/AEM.01541-09
- Serino, M., Blasco-Baque, V., and Burcelin, R. 2012. Microbes on-air: gut and tissue microbiota as targets in type 2 diabetes. J. Clin. Gastroenterol. 46 Suppl, S27-28. https://doi.org/10.1097/MCG.0b013e318264e844
- Topp, E., Chapman, R., Devers-Lamrani, M., Hartmann, A., Marti, R., Martin-Laurent, F., Sabourin, L., Scott, A., and Sumarah, M. 2013. Accelerated biodegradation of veterinary antibiotics in agricultural soil following long-term exposure, and isolation of a sulfamethazine-degrading sp. J. Environ. Qual. 42, 173-178. https://doi.org/10.2134/jeq2012.0162
- Unno, T., Jang, J., Han, D., Kim, J.H., Sadowsky, M.J., Kim, O.S., Chun, J., and Hur, H.G. 2010. Use of barcoded pyrosequencing and shared OTUs to determine sources of fecal bacteria in watersheds. Environ. Sci. Technol. 44, 7777-7782. https://doi.org/10.1021/es101500z
- Zhou, Z., He, S., Liu, Y., Cao, Y., Meng, K., Yao, B., Ringo, E., and Yoon, I. 2011. Gut microbial status induced by antibiotic growth promoter alters the prebiotic effects of dietary DVAQUA(R) on Aeromonas hydrophila-infected tilapia: production, intestinal bacterial community and non-specific immunity. Vet. Microbiol.149, 399-405. https://doi.org/10.1016/j.vetmic.2010.11.022