Comparison of Molecular Characteristics of Extended Spectrum ${\beta}$-lactamase Producing Escherichia coli Strains Isolated from Patients with Urinary Tract Infections between 2 Time Periods of 1989 and 2010 at Gangwon Province in Korea

  • Park, Min (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Park, Soon Deok (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Kim, Sa-Hyun (Department of Clinical Laboratory Science, Semyung University) ;
  • Lee, Gyusang (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Woo, Hyun Jun (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Kim, Hyun Woo (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • An, Byungrak (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Jang, In Ho (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University) ;
  • Uh, Young (Department of Laboratory Medicine, Yonsei University Wonju College of Medicine) ;
  • Kim, Jong-Bae (Department of Biomedical Laboratory Science, College of Health Science, Yonsei University)
  • Received : 2013.08.23
  • Accepted : 2013.09.17
  • Published : 2013.09.30

Abstract

Etiological agents of extended spectrum ${\beta}$-lactamase (ESBL) producing uropathogenic Escherichia coli (UPEC) have become a major problem in urinary tract infections. The purpose of this study was to compare the molecular characteristics of ESBL producing UPEC strains isolated from 1989 and 2010. A total of 301 strains of UPEC clinical isolates was collected from Korean healthcare facility in 1989 (126 strains) and in 2010 (175 strains). UPEC clinical isolates were analyzed by multiplex polymerase chain reaction method (ESBL related bla genes and phylogenetic groups) and amplified fragment length polymorphism (AFLP). Among 301 isolates, ESBL producing UPEC were 8 strains (6.3%) in 1989 isolates and 35 strains (20%) in 2010 isolates. The rate of bla genes in ESBL producing UPEC from 1989 isolates and 2010 isolates were $bla_{TEM}$ (75% and 85.7%), $bla_{CTX-M}$ (0% and 91.4%), $bla_{OXA}$ (25% and 20%), $bla_{PER}$ (0% and 2.9%). The distribution of phylogenetic groups in 1989 isolates and 2010 isolates were A (37.5% and 11.4%), B2 (12.5% and 51.4%), and D (50% and 37.1%). The most prevalent ESBL related bla gene and phylogenetic group were $bla_{CTX-M}$ (91.4%) and B2 (51.4%) in 2010 isolates, while $bla_{CTX-M}$ was not detected in 1989 isolates. Among 43 ESBL producing UPEC were grouped into 12 clusters up to 76% of genetic similarities by AFLP analysis. During past twenty one years, the rate of the ESBL producing UPEC strains in 2010 isolates was increased than that of in 1989 isolates. Also, the most prevalent ESBL related bla gene has been changed from $bla_{TEM}$ to $bla_{CTX-M}$.

Keywords

References

  1. Bingen E, Picard B, Brahimi N, Mathy S, Desjardins P, Elion J, Denamur E. Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strains. J infect Dis. 1998. 177: 642-650. https://doi.org/10.1086/514217
  2. Clermont O, Bonacorsi S, Bingen E. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol. 2000. 66: 4555-4558. https://doi.org/10.1128/AEM.66.10.4555-4558.2000
  3. Cockerill F, Wikler M, Alder J, Dudley M, Eliopoulos G, Ferraro M, Hardy D, Hecht D, Hindler J, Patel J, Powell M, Swenson J, Thomson R, Traczewski M, Turnidge J, Weinstein M, Zimmer B. Perdormance standards for antimicrobial susceptibility testing; Twenty-Second Informational Supplement. Clinical Laboratory Standards Institute. 2010. 32.
  4. Dallenne C, Costa AD, Decre'D, Favier C, Arlet G. Development of a set of multiplex PCR assays for the detection of genes encoding important ${\beta}$-lactamases in Enterobacteriaceae. J Antimicrob Chemother. 2010. 65: 490-495. https://doi.org/10.1093/jac/dkp498
  5. Gibson JR, Slater E, Xerry J, Tompkins DS, Owen RJ. Use of an amplified-fragment length polymorphism technique to fingerprint and differentiate isolates of Helicobacter pylori. J Clin Microbiol. 1998. 36: 2580.
  6. Janssen P, Coopman R, Huys G, Swings J, Bleeker M, Vos P, Zabeau M, Kersters K. Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiol. 1996. 142: 1881-1893. https://doi.org/10.1099/13500872-142-7-1881
  7. Lee GS and Kim JB. Patterns of antimicrobial resistance and genotyping of extended spectrum ${\beta}$-lactamase (ESBL) producing clinical isolates in Korea. J Exp Biomed Sci. 2007. 13: 293-304.
  8. Lee KN, Kim WJ, Lee YH. Prevalence of extended spectrum ${\beta}$-lactamase-producing clinical isolates of Escherichia coli in a university hospital, Korea. Korean J Microbiol. 2004. 40: 295-301.
  9. Lee SJ, Cho YH, Kim BW, Lee JG, Jung SI, Lee SD, Lee SE, Kim ME, Choi YD, Rim JS, Sim BS, Cho IR, Ryu SB, Kim CS, Kim WJ, Lee TY. A multicenter study of antimicrobial susceptibility of uropathogens causing acute uncomplicated cystitis in woman. Korean J Urol. 2003. 44: 697-701.
  10. Lee SJ, Lee DS, Choe HS, Shim BS, Kim CS, Kim ME, Cho YH. Antimicrobial resistance in community-acquired urinary tract infection: results from Korean antimicrobial resistance monitoring system. J Infect Chemother. 2011. 17: 440-446. https://doi.org/10.1007/s10156-010-0178-x
  11. Li D, Liu B, Guo X, Liu F, Feng L, Wang L. A multiplex PCR method to detect 14 Escherichia coli serogroups associated with urinary tract infections. J Microbiol Methods. 2010. 82: 71-77. https://doi.org/10.1016/j.mimet.2010.04.008
  12. Li XM, Jang SJ, Bae IK, Park G, Kim YS, Shin JH, Moon DS, Park YJ. Frequency of extended-spectrum ${\beta}$-lactamases (ESBL) and AmpC ${\beta}$-lactamase Genes in Escherichia coli and Kelbsiella pneumonia over a three-year period in a university hospotal in Korea. Korean J Lab Med. 2010. 30: 616-623. https://doi.org/10.3343/kjlm.2010.30.6.616
  13. Lim KH, Lee GS, Park M, Lee JH, Suh IB, Ryu SW, Eom YB, Kim JB. Genetic relationship between SCCmec types and virulence factors of methicillin-resistant Staphylococcus aureus Clinical isolates in Korea. J Exp Biomed Sci. 2010. 16: 75-82.
  14. Pai HJ. The characteristics of extended-spectrum ${\beta}$-lactamases in Korean isolates of Enterobacteriacece. Yonsei Med J. 1998. 39: 514-519.
  15. Pai HJ, Lyu S, Lee JH, Kim JM, Kwon Y, Kim JW, Choe KW. Survey of extended-spectrum ${\beta}$-lactamases in clinical isolates of Escherichia coli and Klebsiella pneumonia: Prevalence of TEM-52 in Korea. J Clin Microbiol. 1999. 37: 1758.
  16. Paterson DL, Bonomo RA. Extended-spectrum ${\beta}$-lactamase: a clinical update. Clin Microbiol Rev. 2005. 18: 657. https://doi.org/10.1128/CMR.18.4.657-686.2005
  17. Ryoo NH, Jeon DS, Kim JR, Jeon CH, Suh HS. Moleculoepideiological characteristics of extended-spectrum ${\beta}$-lactamase producing Escherichia coli and Klebsiella pneumonia strains in Daegu. Korean J Lab Med. 2004. 24: 96-106.
  18. Song SW, Lee EY, Koh EM, Ha HS, Jeong HJ, Bae IK, Jeong SH. Antibiotic resistance mechanisms of Escherichia coli isolates from urinary specimens. Korean J Lab Med. 2009. 29: 17-24. https://doi.org/10.3343/kjlm.2009.29.1.17