DOI QR코드

DOI QR Code

Detection of Mycobacterium kansasii Using DNA-DNA Hybridization with rpoB Probe

  • Kweon, Tae-Dong (Department of Anesthesiology and Pain Medicine, Yonsei University College of Medicine) ;
  • Bai, Sun-Joon (Department of Anesthesiology and Pain Medicine, Yonsei University College of Medicine) ;
  • Choi, Chang-Shik (Department of Oriental Medicine Resources, Far East University) ;
  • Hong, Seong-Karp (Division of Bio and Health Sciences, Mokwon University)
  • Received : 2012.04.09
  • Accepted : 2012.05.09
  • Published : 2012.06.30

Abstract

A microtiter well plate DNA hybridization method using Mycobacterium kansasii-specific rpoB DNA probe (kanp) were evaluated for the detection of M. kansasii from culture isolates. Among the 201 isolates tested by this method, 27 strains show positive results for M. kansasii, but the other 174 isolates were negative results for M. kansasii. This result was consistent with partial rpoB sequence analysis of M. kansasii and the result of biochemical tests. The negative strains by this DNA-DNA hybridization method were identified as Mycobacterium tuberculosis (159 strains), Mycobacterium avim (5 strains), Mycobacterium intracellulare (8 strains), and Mycobacterium flavescens (2 strain) by rpoB DNA sequence analysis. Due to high sensitivity and specificity of this test result, we suggest that DNA-DNA hybridization method using rpoB DNA probes of M. kansasii could be used for the rapid and convenient detection of M. kansasii.

Keywords

References

  1. K. C. Bloch, L. Zwerlin, M. J. Pletcher, J. A. Hahn, J. L. Gerberding, S. M. Ostroff, D. J. Vugia, and A. L. Reingold, "Incidence and clinical implications of isolation of Mycobacterium kansasii: results of a 5-year, population-based study," Annals of Internal Medicine, vol. 129, no 9, pp. 698-704, 1998. https://doi.org/10.7326/0003-4819-129-9-199811010-00004
  2. A. J. Evans, A. J. Crisp, R. B. Hubbard, A. Colville, S. A. Evans, and I. D. Johnston, "Pulmonary Mycobacterium kansasii infection: comparison of radiological appearances with pulmonary tuberculosis," Thorax, vol. 51, no. 12, pp. 1243-1247, 1996. https://doi.org/10.1136/thx.51.12.1243
  3. E. Tortoli, A. Mariottini, and G. Mazzarelli, "Evaluation of INNOLiPA MYCOBACTERIA v2: improved reverse hybridization multiple DNA probe assay for mycobacterial identification," Journal of Clinical Microbiology, vol. 41, no. 9, pp. 4418-4420, 2003. https://doi.org/10.1128/JCM.41.9.4418-4420.2003
  4. A. Sajduda, A. Martin, F. Portaels, and J. C. Palomino, "hsp65 PCR-restriction analysis (PRA) with capillary electrophoresis for species identification and differentiation of Mycobacterium kansasii and Mycobacterium chelonae-Mycobacterium abscessus group," International Journal of Infectious Diseases, vol. 16, no. 3, pp. 193- 197, 2012.
  5. B. J. Kim, S. H. Lee, M. A. Lyu, S. J. Kim, G. H. Bai, G. T. Chae, E. C. Kim, C. Y. Cha, and Y. H. Kook, "Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB)," Journal of Clinical Microbiology, vol. 37, no. 6, pp. 1714-1720, 1999.
  6. S. K. Hong, B. J. Kim, Y. J. Yun, K. H. Lee, E. C. Kim, E. M. Park, Y. G. Park, G. H. Bai, and K. H. Kook, "Identification of Mycobacterium tuberculosis by PCR-linked reverse hybridization using specific rpoB oligonucleotide probes," Journal of Microbiological Methods, vol. 59, no. 1, pp. 71-79, 2004. https://doi.org/10.1016/j.mimet.2004.06.004
  7. D. Hillemann, E. Richter, and S. Rusch-Gerdes, "Use of the BACTEC Mycobacteria Growth Indicator Tube 960 automated system for recovery of Mycobacteria from 9,558 extrapulmonary specimens, including urine samples," Journal of Clinical Microbiology, vol. 44, no. 11, pp. 4014-1017, 2006. https://doi.org/10.1128/JCM.00829-06
  8. F. Z. Badak, D. L. Kiska, M. O'Connell, C. M. Nycz, C. Hartley, S. Setterquist, and R. L. Hopfer, Confirmation of the presence of Mycobacterium tuberculosis and other mycobacteria in mycobacterial growth indicator tubes (MGIT) by multiplex strand displacement amplification," Journal of Clinical Microbiology, vol. 35, no. 5, pp. 1239-1243, 1997.
  9. N. Williams-Bouyer, R. Yorke, H. I. Lee, and G. L. Woods, "Comparison of the BACTEC MGIT 960 and ESP culture system II for growth and detection of mycobacteria," Journal of Clinical Microbiology, vol. 38, no. 11, pp. 4167-4170, 2000.
  10. A. Carricajo, N. Fonsale, A. C. Vautrin, and G. Aubert, "Evaluation of BacT/Alert 3D liquid culture system for recovery of mycobacteria from clinical specimens using sodium dodecyl (lauryl) sulfate-NaOH decontamination," Journal of Clinical Microbiology, vol. 39, no. 10, pp. 3799-3800, 2001. https://doi.org/10.1128/JCM.39.10.3799-3800.2001
  11. V. J. Tevere, P. L. Hewitt, A. Dare, P. Hocknell, A. Keen, J. P. Spadoro, and K. K. Young, "Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe," Journal of Clinical Microbiology, vol. 34, no. 4, pp. 918-923, 1996.
  12. F. Portaels, J. Agular, K. Fissette, P. A. Fonteyne, H. de Beenhouwer, P. de Rijk, A. Guedenon, R. Lemans, C. Steunou, C. Zinsou, J. M. Dumonceau, and W. M. Meyers," Journal of Clinical Microbiology, vol. 35, no. 5, pp. 1097-1100, 1997.
  13. H. Stender, K. Lund, K. H. Petersen, O. F. Rasmussen, P. Hongmanee, H. Miorner, and S. E. Godtfredsen, "Fluorescence In situ hybridization assay using peptide nucleic acid probes for differentiation between tuberculous and nontuberculous mycobacterium species in smears of mycobacterium cultures," Journal of Clinical Microbiology, vol. 37, no. 9, pp. 2760-2765, 1999.
  14. P. N. Suffys, A. da Silva-Rocha, M. de Oliveira, C. E. Campos, A. M. Barreto, F. Portaels, L. Rigouts, G. Wouters, G. Jannes, G. van Reybroeck, W. Mijs, and B. Vanderborght, "Rapid identification of Mycobacteria to the species level using INNO-LiPA Mycobacteria, a reverse hybridization assay," Journal of Clinical Microbiology, vol. 39, no. 12, pp. 4477-4482, 2001. https://doi.org/10.1128/JCM.39.12.4477-4482.2001