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Classification of Cognitive States from fMRI data using Fisher Discriminant Ratio and Regions of Interest

  • Do, Luu Ngoc (Department of Computer Engineering, Chonnam National University) ;
  • Yang, Hyung Jeong (Department of Computer Science, Chonnam National University)
  • Received : 2012.08.31
  • Accepted : 2012.11.14
  • Published : 2012.12.28

Abstract

In recent decades, analyzing the activities of human brain achieved some accomplishments by using the functional Magnetic Resonance Imaging (fMRI) technique. fMRI data provide a sequence of three-dimensional images related to human brain's activity which can be used to detect instantaneous cognitive states by applying machine learning methods. In this paper, we propose a new approach for distinguishing human's cognitive states such as "observing a picture" versus "reading a sentence" and "reading an affirmative sentence" versus "reading a negative sentence". Since fMRI data are high dimensional (about 100,000 features in each sample), extremely sparse and noisy, feature selection is a very important step for increasing classification accuracy and reducing processing time. We used the Fisher Discriminant Ratio to select the most powerful discriminative features from some Regions of Interest (ROIs). The experimental results showed that our approach achieved the best performance compared to other feature extraction methods with the average accuracy approximately 95.83% for the first study and 99.5% for the second study.

Keywords

References

  1. J. Ford, H. Farid, F. Makedon and L.A Flashman, "Patient Classification of fMRI Activation Maps," LNCS, vol. 2879, 2003, pp. 58-65.
  2. M.A Lindquist, "The Statistic al Analysis of fMRI Data," Statistical Science, vol. 28, 2008, pp. 439-464.
  3. R.A. Poldrack, J.A. Mumford and T.E. Nichols, Handbook of functional MRl data analysis. Cambridge University Press, 2011.
  4. T.M. Mitchell, R. Hutchinson, R.S. Niculescu, F. Pereira, X. Wang and M. Just, "Classifying Instantaneous Cognitive States from fMRI data," American Medical Informatics Association Symposium, 2003, pp. 465-469.
  5. T.M. Mitchell, R. Hutchinson, R.S. Niculescu, F. Pereira, X. Wang, M. Just and S. Newman, "Learning to decode Cognitive States from Brain Images," Machine Learning, vol. 57, 2004, pp. 145-175. https://doi.org/10.1023/B:MACH.0000035475.85309.1b
  6. B.M. Bly, "When you have a General Linear Hammer, every fMRI time-series looks like independent identically distributed nails," Concepts and Metmds in NeuroImaging Workshop, 2001.
  7. K.J. Friston, A.P. Holmes, K. Worsley, J.B. Poline, C.D. Frith and R.S.J. Frackowiak, "Statistical parametric maps in functional imaging: A general linear approach," Human Brain Mapping, vol. 2, 1995, pp. 189-210.
  8. P.A.d.F.R. Hojen-Sorensen, L.K. Hansen and C.E. Rasmussen, "Bayesian modeling of fMRI time series," Proc. Conf. Advances in Neural Information Processing Systems, NIPS, 1999, pp. 754-760.
  9. T. Jung, S. Makeig, M. McKeown, A. Bell, T. Lee and T. Sejnowski, "Imaging Brain dynamics using Independent Component Analysis," Proc.IEEE, vol. 89, 2001, pp. 1107-1122. https://doi.org/10.1109/5.939827
  10. T. Jung, S. Makeig, M. McKeown, A. Bell, S. Kinderman and T. Sejnowski, "Analysis of fMRI data by blind separation into independent spatial components," Human Brain Mapping, vol. 6, 1998, pp. 160-188. https://doi.org/10.1002/(SICI)1097-0193(1998)6:3<160::AID-HBM5>3.0.CO;2-1
  11. J.V. Haxby, M.I. Gobbini, M.L Furey, A. Ishai, J.L. Astouchen and P. Pietrini, "Distributed and overlapping representations of faces and objects in ventral temporal cortex," Science, vol. 293, 2001, pp. 2425-2430. https://doi.org/10.1126/science.1063736
  12. D.D. Cox and R.L. Savoy, " Functional magnetic resonance imaging (fMRI) "brain reading": Detecting and classifying distributed patterns of fMRI activity in human visual cortex," NeuroImage, vol. 19, 2003, pp. 261-270 https://doi.org/10.1016/S1053-8119(03)00049-1
  13. M.T.T. Hoang, Y.G. Won and H.J. Yang, " Cognitive States Detection in fMARI Data Analysis using incremental PCA," ICCSA, 2007, pp. 335-341.
  14. F. Yong, D. Shen and C. Davatzikos, "Detecting Cognitive States from fMRI Images by Machine Learning and Multivariate Classification," Proceedings of the 2006 Conference on Computer Vision and Pattern Recognition Workshop. 2006.
  15. J.A Etzel, Y. Gazzola and C. Keysers, "An introduction to anatomical ROI-based fMRI classification analysis," Brain Research, vol. 1282, 2009, pp. 114-125. https://doi.org/10.1016/j.brainres.2009.05.090
  16. R.S. Bapi, V.Singh and K.P. Miyapuram, "Detection of Cognitive States from fMRI data using Machine Learning Techniques," IJCAI, 2007, pp. 587 -592 .
  17. N. Bernard, A. Vahdat, G. Hamameh and R. Abugharbieh, " Generalized Sparse Classifiers for Decoding Cognitive States in fMRI," Proceedings of the First international conference on Machine learning in medical imaging, 2010, pp. 108- 115.
  18. J. Rademacher, A.M. Galaburda, D.N. Kermedy, P.A. Filipek and V.S. Caviness, "Human celebral cortex: Localization, parcellation, and morphometry with magnetic resonance imaging," Journal of Cognitive Neuroscience, vol. 4, 1992, pp. 352-374. https://doi.org/10.1162/jocn.1992.4.4.352
  19. S. Theoridis, A. Pikrakis, K. Koutroumbas and D. Cavouras, Introduction to Pattern Recognition - A MATLAB Approach, Academic Press, 2009.
  20. P.Tan, M. Steinbach and V. Kumar, Introduction to Data Mining. Pearson Addison Wesley, 2006.