References
- Bailey TL, Williams N, Misleh C, Li WW (2006) MEME: discovering and analyzing DNA and protein sequence motif. Nucleic Acids Res 34:369-373
- Bendahmane A, Kanyuka K, Baulcombe DC (1999) The Rx gene from potato controls separate virus resistance and cell death responses. Plant Cell 11:781-792 https://doi.org/10.1105/tpc.11.5.781
- Bendahmane A, Farnham G, Moffett P, Baulcombe DC (2002) Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato. Plant J 32:195-204 https://doi.org/10.1046/j.1365-313X.2002.01413.x
- Cannon SB, Zhu H, Baumgarten AM, Spangler R, May G, Cook DR, Young ND (2002) Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J Mol Evol 54:548-562 https://doi.org/10.1007/s00239-001-0057-2
- Dangl JL, Jones JD (2001) Plant pathogens and integrated defense responses to infection. Nature 411:826-833 https://doi.org/10.1038/35081161
- De Givry S, Bouchez M, Chabrier P, Milan D, Schiex T (2005) CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics 21:1703-1704 https://doi.org/10.1093/bioinformatics/bti222
- DeYoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7:1243-1249 https://doi.org/10.1038/ni1410
- Ellis J, Jones D (1998) Structure and function of proteins controlling strain-specific pathogen resistance in plants. Curr Opin Plant Biol 1:288-293 https://doi.org/10.1016/1369-5266(88)80048-7
- Friederike CT, Bodo TR (2005) Survey of resistance gene analogs in Solanum caripense, a relative of potato and tomato, and update on R gene genealogy. Mol Gen Genomics 274:595-605 https://doi.org/10.1007/s00438-005-0038-z
- Gabriels SH, Vossen JH, Ekengren SK, van Ooijen G, Abd-El-Haliem AM, van den Berg GC, Rainey DY, Martin GB, Takken FL, de Wit PJ, Joosten MH (2007) An NB-LRR protein required for HR signaling mediated by both extra- and intracellular resistance proteins. Plant J 50:14-28 https://doi.org/10.1111/j.1365-313X.2007.03027.x
- Grant JJ, Chini A, Basu D, Loake GJ (2003) Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens. Mol Plant Microbe Interact 16:669-680 https://doi.org/10.1094/MPMI.2003.16.8.669
- Grube RC, Radwanski ER, Jahn M (2000) Comparative genetics of disease resistance within the Solanaceae. Genetics 155:873-887
- Hulbert SH, Webb CA, Smith SM, Sun Q (2001) Resistance gene complexes: evolution and utilization. Annu Rev Phytopathol 39:285-312 https://doi.org/10.1146/annurev.phyto.39.1.285
- Kumar S, Dudley J, Nei M, Mamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings Bioinf 9:299-306 https://doi.org/10.1093/bib/bbn017
- Livingstone KD, Lackney VK, Blauth JR, van Wijk R, Jahn MK (1999) Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics 152:1183-1202
- Lorang JM, Sweat TA, Wolpert TJ (2007) Plant disease susceptibility conferred by a ''resistance'' gene. Proc Natl Acad Sci USA 104:14861-14866 https://doi.org/10.1073/pnas.0702572104
- Luo M, Thomas C, You FM, Hsiao J, Ouyang H, Buell R, Malandro M, McGuire PE, Anderson OD, Dvorak J (2003) High- throughput fingerprinting of bacterial artificial chromosomes using the SNaPshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 82:378-389 https://doi.org/10.1016/S0888-7543(03)00128-9
- Martin GB, Bogdanove AJ, Sessa G (2003) Understanding the functions of plant disease resistance proteins. Annu Rev Plant Biol 54:23-61 https://doi.org/10.1146/annurev.arplant.54.031902.135035
- Martinez M, Abraham Z, Carbonero P, Diaz I (2005) Comparative phylogenic analysis of cystatin gene families from Arabidopsis, rice and barley. Mol Genet Genomics 273:423-432 https://doi.org/10.1007/s00438-005-1147-4
- Mazourek M, Cirulli ET, Collier SM, Landry LG, Kang BC, Quirin EA, Bradeen JM, Moffett P, Jahn MM (2009) The fractionated orthology of Bs2 and Rx/Gpa2 supports shared synteny of disease resistance in the Solanaceae. Genetics 182:1351-1364 https://doi.org/10.1534/genetics.109.101022
- McDowell JM, Woffenden BJ (2003) Plant disease resistance genes: recent insights and potential applications. Trends Biotechnol 21:178-183 https://doi.org/10.1016/S0167-7799(03)00053-2
- Meyers BC, Shen KA, Rohani P, Gaut B, Michelmore RW (1998) Receptor like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 10:1833-1846 https://doi.org/10.1105/tpc.10.11.1833
- Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332 https://doi.org/10.1046/j.1365-313X.1999.t01-1-00606.x
- Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15:809-834 https://doi.org/10.1105/tpc.009308
- Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130 https://doi.org/10.1101/gr.8.11.1113
- Moffett P, Farnham G, Peart J, Baulcombe DC (2002) Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death. EMBO J 21:4511-4519 https://doi.org/10.1093/emboj/cdf453
- Mondragon-Palomino M, Meyers BC, Michelmore RW, Gaut BS (2002) Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res 12:1305-1315 https://doi.org/10.1101/gr.159402
- Noir S, Combes MC, Anthony F, Lashermes P (2001) Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees. Mol Gen Genomics 265:654-662 https://doi.org/10.1007/s004380100459
- Nombela G, Williamson VW, Muniz M (2003) The root-knot nematode resistance gene Mi-1.2 of tomato is responsible for resistance against the whitefly Bemisia tabaci. Mol Plant Microbe Interact 16:645-649 https://doi.org/10.1094/MPMI.2003.16.7.645
- Pan Q, Liu YS, Budai-Hadrian O, Sela M, Carmel-Goren L, Zamir D, Fluhr R (2000) Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologs in the genomes of two dicotyledons: tomato and Arabidopsis. Genetics 155:309-322
- Park SW, An SJ, Yang HB, Kwon JK, Kang BC (2009) Optimization of high resolution melting analysis and discovery of single nucleotide polymorphism in Capsicum. Hort Environ Biotechol 50:31-39
- Peart JR, Mestre P, Lu R, Malcuit I, Baulcombe DC (2005) NRG1, a CC-NB-LRR protein, together with N, a TIR-NB-LRR protein, mediates resistance against tobacco mosaic virus. Curr Biol 15:968-973 https://doi.org/10.1016/j.cub.2005.04.053
- Rairdan GJ, Moffett P (2006) Distinct domains in the ARC region of the potato resistance protein Rx mediate LRR binding and inhibition of activation. Plant Cell 18:2082-2093 https://doi.org/10.1105/tpc.106.042747
- Rossi M, Araujo PG, Paulet F, Garsmeur O, Dias VM, Chen H, Van Sluys MA, D'Hont A (2003) Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane. Mol Genet Genomics 269:406-419 https://doi.org/10.1007/s00438-003-0849-8
- Sacco M, Mansoor S, Moffett P (2007) A RanGAP protein physically interacts with the NB-LRR protein Rx, and is required for Rx-mediated viral resistance. Plant J 52:82-93 https://doi.org/10.1111/j.1365-313X.2007.03213.x
- Saraste M, Sibbald P, Wittinghofer A (1990) The P loop-a common motif in ATP- and GTP-binding proteins. Trends Biochem Sci 15:430-434 https://doi.org/10.1016/0968-0004(90)90281-F
- Seo YS, Rojas MR, Lee JY, Lee SW, Jeon JS, Ronald P, Lucas WJ, Gilbertson RL (2006) A viral resistance gene from common bean functions across plant families and is up-regulated in a non-virus-specific manner. Proc Natl Acad Sci USA 103:11856-11861 https://doi.org/10.1073/pnas.0604815103
- Shi JX, Choi D, Kim BD, Kang BC (2008) Inheritance study of potato virus X resistance in Capsicum annuum. Plant Pathol J 24:433-438 https://doi.org/10.5423/PPJ.2008.24.4.433
- Tai TH, Dahlbeck D, Clark ET, Gajiwala P, Pasion R, Whalen MC, Stall RE, Staskawicz BJ (1999) Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato. Proc Natl Acad Sci USA 96:14153-14158 https://doi.org/10.1073/pnas.96.24.14153
- Tameling WI, Baulcombe DC (2007) Physical association of the NB-LRR resistance protein Rx with a Ran GTPase-activating protein is required for extreme resistance to potato virus X. Plant Cell 19:1682-1694 https://doi.org/10.1105/tpc.107.050880
- Tameling WIL, Elzinga SD, Darmin PS, Vossen JH, Takken FLW, Haring MA, Cornelissen BJC (2002) The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity. Plant Cell 14:2929-2939 https://doi.org/10.1105/tpc.005793
- Traut TW (1994) The functions and consensus motifs of nine types of peptide segments that form different types of nucleotide binding sites. Eur J Biochem 222:9-19 https://doi.org/10.1111/j.1432-1033.1994.tb18835.x
- Trognitz FC, Trognitz BR (2005) Survey of resistance gene analogs in Solanum caripense, a relative of potato and tomato, and update on R gene genealogy. Mol Genet Genomics 274:595-605 https://doi.org/10.1007/s00438-005-0038-z
- van der Vossen EA, van der Voort JN, Kanyuka K, Bendahmane A, Sandbrink H, Baulcombe DC et al (2000) Homologs of a single resistance-gene cluster in potato confer resistance to distinct pathogens: a virus and a nematode. Plant J 23:567-576 https://doi.org/10.1046/j.1365-313x.2000.00814.x
- Wang Y, Diehl A, Wu FN, Vrebalov JL, Giovannoni J, Siepel A et al (2008) Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae. Genetics 180:391-408 https://doi.org/10.1534/genetics.108.087981
- Xiao WK, Xu ML, Zhao JR, Wang FG, Li JS, Dai JR (2006) Genome-wide isolation of resistance gene analogs in maize (Zea mays L.). Theor Appl Genet 113:63-72 https://doi.org/10.1007/s00122-006-0272-8
- Yoo EY, Kim SJ, Kim JY, Kim BD (2001) Construction and characterization of a bacterial artificial chromosome library of chili pepper. Mol Cells 12:117-120
- Yoo EY, Kim S, Kim YH, Lee CJ, Kim BD (2003) Construction of a deep coverage BAC library from Capsicum annuum, ''CM334.'' Theor Appl Genet 107:540-543 https://doi.org/10.1007/s00122-003-1279-z
- Young ND (2000) The genetic architecture of resistance. Curr Opin Plant Biol 3:285-290 https://doi.org/10.1016/S1369-5266(00)00081-9
- Zhu H, Cannon SB, Young ND, Cook DR (2002) Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula. Mol Plant Microbe Interact 15:529-539 https://doi.org/10.1094/MPMI.2002.15.6.529