DOI QR코드

DOI QR Code

Genetic origin identification of Siberian chipmunks (Tamias sibiricus) in pet shops of South Korea

  • Lee, Seo-Jin (Conservation Genome Resource Bank for Korean Wildlife and Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University) ;
  • Jung, Gil-A (Department of Life Science, Sangmyung University) ;
  • Min, Mi-Sook (Conservation Genome Resource Bank for Korean Wildlife and Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University) ;
  • Kim, Chuel-Kyu (Department of Toxicological Evaluation and Research, National Institute of Food and Drug Safety Evaluation, Korea Food & Drug Administration) ;
  • Lee, Hang (Conservation Genome Resource Bank for Korean Wildlife and Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University) ;
  • Kim, Chang-Bae (Department of Life Science, Sangmyung University) ;
  • Lee, Mu-Yeong (Conservation Genome Resource Bank for Korean Wildlife and Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University)
  • 투고 : 2010.10.22
  • 심사 : 2011.01.19
  • 발행 : 2011.06.30

초록

Siberian chipmunks, Tamias sibiricus, are one of several popular companion animals found in the pet shops of South Korea. At present, however, there have been no studies done in South Korea examining their origin even though they could be potential carriers of zoonotic diseases, and are a species of concern for efficient conservation and management strategies. Sequences of the mitochondrial cytochrome b gene (1140 bp) were determined to investigate the origin of Siberian chipmunks sold in four South Korean pet shops through comparison with sequence data from animals of known locality. Nine Siberian chipmunks were collected from pet shops in South Korea, which resulted in nine haplotypes. One (AR) of these coincided with the haplotype previously described. Phylogenetic and network analyses using 53 haplotypes including 45 haplotypes from GenBank showed three phylogenetic groups in South Korea, almost concordant to locality, designated as northern, central, and southern parts as described in a previous study. Of the nine individuals examined from the pet shops, eight were clustered into the northern phylogroup but one (cgrb9153) was grouped with the southern phylogroup, implying that at least the Siberian chipmunks examined in this study did not originate from other countries. It is likely that most individuals sold in the pet shops of Seoul were caught in the wild in Gyeonggi-do and Gangwon-do, or are maternal descendants of captive-bred individuals originating from the northern part of South Korea. It is recommended that conservation and management units of Korean chipmunks should be examined in further detail.

키워드

참고문헌

  1. Aguirre AA, Ostfeld RS, Tabor GM, House C, Pearl MC. 2002. Conservation medicine: ecological health in practice. 1st ed. New York: Oxford University Press.
  2. An JH, Lee MY, Min MS, Lee MH, Lee H. 2007. A molecular genetic approach for species identification of mammals and sex determination of birds in a forensic case of poaching from South Korea. Forensic Sci Int. 167:59-61. https://doi.org/10.1016/j.forsciint.2005.12.031
  3. Baker CS. 2008. A truer measure of the market: the molecular ecology of fisheries and wildlife trade. Mol Ecol. 17:3985-3998. https://doi.org/10.1111/j.1365-294X.2008.03867.x
  4. Baker CS, Steel D, Choi Y, Lee H, Kim KS, Choi SK, Ma Y-U, Hambleton C, Psihoyos L, Brownell RL, Funahashi N. 2010. Genetic evidence of illegal trade in protected whales links Japan with the US and South Korea. Biol Lett. 14: online version.
  5. Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37-48. https://doi.org/10.1093/oxfordjournals.molbev.a026036
  6. Chang SW. 2008. Identification of chipmunks sold in pet shops of Taiwan. Teyou Shengwu Yanjiu. 10:25-34 (in Chinese).
  7. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Heled J, Kearse M, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A. 2010. Geneious v5.0, available from http://www.geneious.com.
  8. Gunnell J,Wauters L, Lurz PWW, Tosi G. 2004. Alien species and interspecific competition: effects of introduced eastern grey squirrels on red squirrel population dynamics. J Anim Ecol. 73:26-35. https://doi.org/10.1111/j.1365-2656.2004.00791.x
  9. Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci USA. 86:6196-6200. https://doi.org/10.1073/pnas.86.16.6196
  10. Koh HS, Wang J, Lee BK, Yang BG, Heo SW, Jang KH, Chun TY. 2009. A phylogroup of the Siberian chipmunk from Korea (Tamias sibiricus barberi) revealed from the mitochondrial DNA cytochrome b gene. Biochem Genet. 47:1-7. https://doi.org/10.1007/s10528-008-9200-8
  11. Lee MY, Lissovsky AA, Park SK, Obolenskaya EV, Dokuchav NE, Zhang Y, Yu L, Kim YJ, Voloshina I, Choi TY, Min MS, Lee H. 2008. Mitochondrial cytochrome b sequence variations and population structure of Siberian chipmunk (Tamias sibiricus) in Northeastern Asia and population substructure in South Korea. Mol Cells. 26:566-575.
  12. Lorenzini R. 2005. DNA forensics and the poaching of wildlife in Italy: a case study. Forensic Sci Int. 153:218-221. https://doi.org/10.1016/j.forsciint.2005.04.032
  13. National Institute of Environmental Research in South Korea. 2004. The second National Ecosystem Survey.
  14. Obolenskaya EV, Lee MY, Dokuchaev NE, Oshida T, Lee MS, Lee H, Andrey AL. 2009. Diversity of Palaearctic chipmunks (Tamias, Sciuridae). Mammalia. 73:281-298.
  15. Pimentel D, Lach L, Zuniga R, Morrison D. 2000. Environmental and economic costs of nonindigenous species in the United States. BioScience. 50:53-65. https://doi.org/10.1641/0006-3568(2000)050[0053:EAECON]2.3.CO;2
  16. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817-818. https://doi.org/10.1093/bioinformatics/14.9.817
  17. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19:2496-2497. https://doi.org/10.1093/bioinformatics/btg359
  18. Sandro B. 2008. Introduction of the American grey squirrel (Sciurus carolinensis) in Europe: a case study in biological invasion. Curr Sci. 95:903-906.
  19. Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony (and Other Methods) 4.0 Beta. Sinauer Associates, Massachusetts.
  20. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882. https://doi.org/10.1093/nar/25.24.4876
  21. Tompkins DM, Sainsbury AW, Nettleton P, Buxton D, Gunnell J. 2002. Parapox virus causes a deleterious disease in red squirrels associated with UK population declines. Proc Biol Sci. 269:529-533. https://doi.org/10.1098/rspb.2001.1897
  22. Vourc'h G, Marmet J, Chassagne M, Bord S, Chapuis J-L. 2007. Borrelia burgdorferi sensu lato in Siberian chipmunks (Tamias sibiricus) introduced in suburban forests in France. Vector Borne Zoonotic Dis. 7:637-641. https://doi.org/10.1089/vbz.2007.0111
  23. Wauters LA, Lurz PWW, Gunnell J. 2000. Interspecific effects of grey squirrels (Sciurus carolinensis) on the space use and population demography of red squirrels (Sciurus vulgaris) in conifer plantations. Ecol Res. 15:271-284. https://doi.org/10.1046/j.1440-1703.2000.00354.x

피인용 문헌

  1. Narrow phylogeographic origin of five introduced populations of the Siberian chipmunk Tamias (Eutamias) sibiricus (Laxmann, 1769) (Rodentia: Sciuridae) established in France vol.15, pp.6, 2011, https://doi.org/10.1007/s10530-012-0375-x
  2. Whole genome survey of big cats (Genus: Panthera) identifies novel microsatellites of utility in conservation genetic study vol.11, pp.1, 2021, https://doi.org/10.1038/s41598-021-92781-0