Journal of the Korean Society for Industrial and Applied Mathematics

  • 제15권3호
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  • Pages.161-175
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  • 2011
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  • 1226-9433(pISSN)
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  • 1229-0645(eISSN)
한국산업응용수학회 (Korean Society for Industrial and Applied Mathematics)
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A GENERALIZED 4-STRING SOLUTION TANGLE OF DNA-PROTEIN COMPLEXES

  • Kim, Soo-Jeong (DEPARTMENT OF APPLIED MATHEMATICAL AND COMPUTATIONAL SCIENCES, UNIVERSITY OF IOWA)
  • 투고 : 2011.04.04
  • 심사 : 2011.06.24
  • 발행 : 2011.09.23
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초록

An n-string tangle is a three dimensional ball with n strings properly embedded in it. A tangle model of a DNA-protein complex is first introduced by C. Ernst and D. Sumners in 1980's. They assumed the protein bound DNA as strings and the protein as a three dimensional ball. By using a tangle analysis, one can predict the topology of DNA within the complex. S.Kim and I. Darcy developed the biologically reasonable 4-string tangle equations and decided a solution tangle, called R-standard tangle. The author discussed more about the simple solution tangles of the equations and found a generalized R-standard tangle solution.

키워드

참고문헌

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피인용 문헌

  1. KNOTTED AND LINKED PRODUCTS OF RECOMBINATION ON T (2, n)#T (2, m) SUBSTRATES vol.51, pp.4, 2014, https://doi.org/10.4134/jkms.2014.51.4.817
  2. Topological tangle modeling of difference topology experiments: tangle analysis of DNA-protein complexes vol.622, pp.1, 2015, https://doi.org/10.1088/1742-6596/622/1/012023
  3. A SURVEY OF N-STRING TANGLE ANALYSES OF DNA-ENZYME SYNAPTIC COMPLEXES vol.35, pp.3, 2017, https://doi.org/10.14317/jami.2017.349
  4. AN ELEMENTARY PROOF OF THE EFFECT OF 3-MOVE ON THE JONES POLYNOMIAL vol.25, pp.2, 2011, https://doi.org/10.7468/jksmeb.2018.25.2.95