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Development of Variation Marker of Myzus persicae by Altitude

고도에 따른 지역별 복숭아혹진딧물 집단 변이 마커 개발

  • Kim, Ju-Il (Highland Agriculture Research Center, National Institute of Crop Science, Rural Development Administration) ;
  • Kwon, Min (Highland Agriculture Research Center, National Institute of Crop Science, Rural Development Administration)
  • 김주일 (농촌진흥청 국립식량과학원 고령지농업연구센터) ;
  • 권민 (농촌진흥청 국립식량과학원 고령지농업연구센터)
  • Received : 2011.10.04
  • Accepted : 2011.11.17
  • Published : 2011.12.30

Abstract

This study focused on the green peach aphid, Myzus persicae, as an indicator pest in Chinese cabbage cultivation to develop a genetic marker. We hypothesized that M. persicae gene flow is related to climate change. Genetic variation was analyzed using five local populations collected at different altitudes (157 m, 296 m, 560 m, 756 m and 932 m above sea level) in Hoengseong, Pyeongchang, and Gangneung areas, plus a laboratory strain used as an outgroup. There were no differences in ecological characteristics among strains. Esterase isozyme pattern and inter-simple sequence repeat (ISSR) PCR results showed significantly different bands between laboratory and wild, local populations. However, there was no difference among local populations. Partial fragments of ribosomal RNA (rRNA) and mitochondrial cytochrome oxidase I (mtCO I) were amplified and their nucleotide sequence was analyzed. Single nucleotide polymorphisms (SNPs) were detected in internal transcribed spacer-2 (ITS-2) and mtCO I regions among the five local populations. These SNPs can be use to discriminate different populations of M. persicae to monitor gene flow.

기후변화에 따른 고도별 곤충의 유전 변이를 분석하고자 배추에서 복숭아혹진딧물(Myzus persicae)을 지표해충으로 변이 분석이 가능한 마커를 개발하고자 하였다. 즉, 지역의 기후가 변하면 유전자가 변동할 것이라는 가설 하에 실내에서 누대 사육된 계통을 비교집단으로 가정하고 횡성, 평창과 강릉 지역에서 고도별 5개 지역(157 m, 296 m, 560 m, 756 m, 932 m)에서 채집된 지역 집단간의 변이를 찾고자 하였다. 생태적 변이는 모든 집단에서 찾을 수가 없었고, 에스터레이즈 동위효소 분석 및 inter-simple sequence repeat (ISSR) PCR 결과에서 실내 사육 계통과 지역 집단간의 차이는 보였으나 지역 집단간의 큰 차이는 찾을 수가 없었다. 그러나 rRNA와 mtCO I 부분 염기서열을 분석하여 5개의 지역집단 내에서 internal transcribed spacer-2 (ITS-2) 와 mtCO I에 각각 한 개씩의 단일염기다형성(SNP)를 발견하였다. 이 SNP는 유전 변동 추적이 가능한 매우 유용한 마커로 사용 될 수 있다.

Keywords

References

  1. Balanya, J.M. Oller, R. B. Huey, G. W. Gilchrist and L. Serra 2006. Global genetic change tracks global climate warming in Drosophila subobscura. Science 313: 1773-1775. https://doi.org/10.1126/science.1131002
  2. Berezovskaia, O.P., O. Moroz and A. Sidorenko. 2002. Intra- and interspecies differences in the ISSR-PCR patterns of bumble bee (Hymenoptera: Bombinae). Tsitol. Gene 36: 28-35.
  3. Birch, A.N., G.S. Begg and G.R. Squire. 2011. How agro-ecological research helps to address food security issues under new IPM and pesticide reduction policies for global crop production systems. J. Exp. Bot. 62: 3251-3261. https://doi.org/10.1093/jxb/err064
  4. Black, W.C. 4th and J.G. Vontas. 2007. Affordable assays for genotyping single nucleotide polymorphisms in insects. Insect Mol. Biol. 16: 377-387. https://doi.org/10.1111/j.1365-2583.2007.00736.x
  5. Bradford, M. M. 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254. https://doi.org/10.1016/0003-2697(76)90527-3
  6. Chatterjee, S.N. and T. P. Mohandas 2003. Identification of ISSR markers associated with productivity traits in silkworm, Bombyx mori L. Genome 46: 438-447. https://doi.org/10.1139/g03-024
  7. Choi, J.H., T. Kijimoto, R.E. Snell, H. Tae, Y. Yang, A.P. Moczek and J. Andrews 2010. Gene discovery in the horned beetle Onthophagus taurus. BMC Genomics 14: 703.
  8. Coates, B.S., D.V.Sumerford, N.J. Miller, K.S. Kim, T.W. Sappington, B.D. Siegfried and L.C. Lewis. 2009. Comparative performance of single nucleotide polymorphism and microsatellite markers for population genetic analysis. J Hered. 100: 556-564. https://doi.org/10.1093/jhered/esp028
  9. Crawford, D., N.M. Tago, T.F. Stuessy, G.J. Anderson, G. Bernardello, E. Ruiz, R.J. Jensen, C. M. Baeza, A. D. Wolfe and O.M. Silva. 2001. Inter simple sequence repeat (ISSR) variation in Lactoris fernandeziana (Lactoridaceae), a rare endemic of the Juan Fernandez Archipelago, Chile. Plant Species Biol. 16: 185-192. https://doi.org/10.1046/j.1442-1984.2001.00065.x
  10. Farris, R.E., R. Ruiz-Arce, M. Ciomperlik, J.D. Vasquez and R. Deleon. 2010. Development of a ribosomal DNA ITS2 marker for the identification of the thrips, Scirtothrips dorsalis. J. Insect Sci. 10: 26.
  11. Frentiu, F.D., M. Adamski, E.A. McGraw, M.W. Blows and S.F. Chenoweth. 2009. An expressed sequence tag (EST) library for Drosophila serrata, a model system for sexual selection and climatic adaptation studies. BMC Genomics 21: 40.
  12. Godwin, I.D., E.A. Aitken and L.W. Smith. 1997. Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis 18: 1524-1528. https://doi.org/10.1002/elps.1150180906
  13. Gornall, J., R. Betts, E. Burke, R. Clark, J. Camp, K. Willett and A. Wiltshire. 2010. Implications of climate change for agricultural productivity in the early twenty-first century. Phil. Trans. R. Soc. B 365: 2973-2989. https://doi.org/10.1098/rstb.2010.0158
  14. Gupta, M., Y.S. Chyi, S.J. Romero and J.L. Owen. 1994. Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theoret. Applied Genet. 89: 998-1006.
  15. Kellermann, V., B. Heerwaarden, C.M. Sgro and A.A. Hoffmann. 2009. Fundamental evolutionary limits in ecological traits drive Drosophila species distributions. Science 325: 1244-1246. https://doi.org/10.1126/science.1175443
  16. Kwon, D.H., K.S. Yoon, J.P. Strycharz, J.M. Clark and S.H. Lee. 2008. Determination of permethrin resistance allele frequency of human head louse populations by quantitative sequencing. J. Med. Entomol. 45: 912-920. https://doi.org/10.1603/0022-2585(2008)45[912:DOPRAF]2.0.CO
  17. Na, Y.N., H.S. Bang, M.H. Kim, Y.J. Oh, M.S. Han, M.K. Kim, K.A. Roh, J.T. Lee and D.R. Choi. 2007. The characteristic on egg-laying and vegetation grazing of Paratlanticus ussuriensis. Kor. J. Environ. Agric. 26: 364-366. https://doi.org/10.5338/KJEA.2007.26.4.364
  18. Oakeshott, J.G., C. Claudianos, R.J. Russell and G.C. Robin. 1999. Carboxyl/cholinesterases: a case study of the evolution of a successful multigene family. BioEssays 21: 1031-1042. https://doi.org/10.1002/(SICI)1521-1878(199912)22:1<1031::AID-BIES7>3.0.CO;2-J
  19. Matsumoto, Y., T. Yanase, T. Tsuda and H. Noda. 2009. Characterization of internal transcribed spacer (ITS1)-ITS2 region of ribosomal RNA gene from 25 species of Culicoides biting midges (Diptera: Ceratopogonidae) in Japan. J. Med. Entomol. 46: 1099-108. https://doi.org/10.1603/033.046.0517
  20. Mort, M.E., D.J. Crawford, G.A. Santos, O.J. Francisco, E.J. Esselman and A.D. Wolfe. 2003. Relationships among the Macaronesian members of Tolpis (Asteraceae: actuceae) based upon analyses of inter-simple sequence repeat (ISSR) markers. Taxon. 52: 511-518. https://doi.org/10.2307/3647449
  21. Nagaraju, J., K.D. Reddy, G.M. Nagaraja and B.N. Sethuraman. 2001. Comparison of multilocus RFLPs and PCR-based marker systems for genetic analysis of the silkworm, Bombyx mori. Heredity 86: 588-597. https://doi.org/10.1046/j.1365-2540.2001.00861.x
  22. Puinean, A.M., S.P. Foster, L. Oliphant, I. Denholm, L.M. Field, N.S. Williamson and C. Bass. 2010. Amplification of a cytochrome P450 gene is associated with resistance to neonicotinoid insecticides in the aphid Myzus persicae. PLoS Genet. 24: e1000999.
  23. Rao. Q., C. Luo, H. Zhang, X. Guo and G.J. Devine. 2011. Distribution and dynamics of Bemisia tabaci invasive biotypes in central China. Bull. Entomol. Res. 101: 81-88. https://doi.org/10.1017/S0007485310000428
  24. Roux, O., M. Gevrey, L. Arvanitakis, C. Gers, D. Bordat and L. Legal. 2007. ISSR-PCR: tool for discrimination and genetic structure analysis of Plutella xylostella populations native to different geographical areas. Mol. Phylogenet. Evo. 43: 240-250. https://doi.org/10.1016/j.ympev.2006.09.017
  25. Schoville, S.D. and G.K. Roderick. 2010. Evolutionary diversification of cryophilic Grylloblatta species (Grylloblattodea: Grylloblattidae) in alpine habitats of California. BMC Evol. Biol. 10: 163. https://doi.org/10.1186/1471-2148-10-163
  26. Song, S.S. and N. Motoyama. 1996. Effect of temperatures on the growth of susceptible and malathion resistant green peach aphid strains. Kor. J. Appl. Entomol. 35: 297-301.
  27. Shigehara, T. and H. Takada. 2004. Mode of inheritance of the polymorphic esterases in Myzus persicae (Hemiptera: Aphididae) in Japan. Bull Entomol. Res. 94: 65-74.
  28. The International Aphid Genomics Consortium. 2010. Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol. 23: e1000313.
  29. Tymon, A.M. and J.K. Pell. 2005. ISSR, ERIC and RAPD techniques to detect genetic diversity in the aphid pathogen Pandora neoaphidi. Mycol. Res. 109: 285-293. https://doi.org/10.1017/S0953756204001807
  30. Umina, P.A., A.R. Weeks, M.R. Kearney, S.W. McKechnie and A.A. Hoffmann. 2005. A rapid shift in a classic cline pattern in Drosophila reflecting climate change. Science 308: 691-693. https://doi.org/10.1126/science.1109523
  31. Xianchun, L., A.S. Mary and R.B. May. 2007. Molecular Mechanisms of Metabolic Resistance to Synthetic and Natural Xenobiotics. Annu. Rev. Entomol. 52: 231-253. https://doi.org/10.1146/annurev.ento.51.110104.151104
  32. Zhumei, R., Z. Bin, W. Dingjiang, M. Enbo, S. Deming and Z. Yang. 2008. Comparative population structure of Chinese sumac aphid Schlechtendalia chinensis and its primary host-plant Rhus chinens. Genetica 132: 103-112. https://doi.org/10.1007/s10709-007-9153-6
  33. Zietkiewicz, E., A. Rafalski and D. Labuda. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183. https://doi.org/10.1006/geno.1994.1151
  34. Zhang, D.X. 2004. Lepidopteran microsatellite DNA: redundant but promising. Trends in Ecol. Evol. 19: 507-509. https://doi.org/10.1016/j.tree.2004.07.020

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