Development of a SCAR Marker Linked to Ph-3 in Solanum ssp.

  • Park, Pue Hee (National Institute of Horticultural & Herbal Science, Rural Development Administration) ;
  • Chae, Young (National Institute of Horticultural & Herbal Science, Rural Development Administration) ;
  • Kim, Hyun-Ran (National Institute of Horticultural & Herbal Science, Rural Development Administration) ;
  • Chung, Kyeong-Ho (National Institute of Horticultural & Herbal Science, Rural Development Administration) ;
  • Oh, Dae-Geun (Department of Food Crops, Korea National College of Agriculture and Fisheries) ;
  • Kim, Ki-Taek (The Foundation of Agri. Tech. Commercialization & Transfer)
  • Received : 2010.06.10
  • Published : 2010.06.30

Abstract

Late blight caused by Phytophthora infestans is historically a serious epidemic disease in potato and tomato cultivations. Accession L3708 (Solanum pimpinellifolium), a new source for late blight resistance was identified in AVRDC, and carries the resistance gene, Ph-3, incompatible to P. infestans race 3. The AFLP markers linked to Ph-3 were previously developed from the L3708 accession (Chunwongse et al. 2002). To facilitate tomato breeding with the Ph-3 gene, an attempt was made to convert AFLP markers to sequence-characterized amplified region (SCAR) markers. Among 6 AFLP markers, only one AFLP marker, L87, was successfully converted to SCAR marker. The resistance-specific 230 bp AFLP fragment was cloned and sequenced, and the PCR primer amplifying a 123 bp fragment was designed. This SCAR marker could discriminate resistant and susceptible individuals with high stringency. The developed SCAR marker could be used for the marker assisted-selection in tomato breeding programs.

Keywords

References

  1. AVRDC. 1998. AVRDC Report 1997. Asian Vegetable Research and Development Center, Shanhua, Tainan, Taiwan, 83-4.
  2. Chague V, Mercier JC, Guenard M, Courcel A, Vedel F. 1996. Identification and mapping on chromosome 9 of RAPD markers linked to Sw-5 in tomato by bulked segregant analysis. Theor Appl Genet 92:1045-1051. https://doi.org/10.1007/BF00224047
  3. Chunwongse J, Chunwongse C, Black L, Hanson P. 2002. Molecular mapping of the Ph-3 gene for late blight resistance in tomato. J. Hort. Sci. & Biotech. 77(3):281-286.
  4. Gallegly ME. 1960. Resistance to the late blight fungus in tomato. Proceedings Plant Science Seminar. Campbell Soup Co., Camden, N.J., p. 113-135.
  5. Giovannoni, JJ, Wing, RA, Ganal, MW, Tanksley, SD. 1991. Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations, Nucleic Acids Res. 19:6553-6558. https://doi.org/10.1093/nar/19.23.6553
  6. Grube RC, Radwanski ER, Jahn M. 2000. Comparative genetics of disease resistance within the Solanaceae. Genetics 155:873-887.
  7. Jones JB, Jones JP, Stall RE, Zitter TA. 1991. Compendium of tomato disease. American Phytopathological Society, St. Paul, Minnesota, USA.
  8. Foolad MR. 2007. Genome mapping and molecular breeding of tomato. International Journal of Plant Genomics 2007:1-52.
  9. Meksem K, Ruben E, Hyten D, Triwitayakorn K, Lightfoot DA. 2001. Conversion of AFLP bands into high-throughput DNA markers. Mol Genet Genomics 265:207-214 https://doi.org/10.1007/s004380000418
  10. Moreau P, Thoquet P, Olivier J, Laterrot H, Grimsley N. 1998. Genetic mapping of Ph-2, a single locus controlling partial resistance to Phytophthora infestans in tomato. Mol Plant Microbe Interact 11:259-269. https://doi.org/10.1094/MPMI.1998.11.4.259
  11. Ohmori T, Murata M, Motoyoshi F. 1996. Molecular characterization of RAPD and SCAR markers linked to the Tm-1 locus in tomato. Theor Appl Genet 92:151-156. https://doi.org/10.1007/BF00223369
  12. Sobir, Ohmori T, Murata M, Motoyoshi F. 2000. Molecular characterization of the SCAR markers tightly linked to the Tm-2 locus of the genus Lycopersicon. Theor Appl Genet 101:64-69. https://doi.org/10.1007/s001220051450