DOI QR코드

DOI QR Code

Genetic Diversity Measures of 8 Local Sheep Breeds in Northwest of China for Genetic Resource Conservation

  • Zeng, X.C. (College of Animal Science and Technology, Shihezi University) ;
  • Chen, H.Y. (College of Pharmacy, Shihezi University) ;
  • Hui, W.Q. (College of Animal Science and Technology, Shihezi University) ;
  • Jia, B. (College of Animal Science and Technology, Shihezi University) ;
  • Du, Y.C. (College of Animal Science and Technology, Shihezi University) ;
  • Tian, Y.Z. (College of Animal Science and Technology, Shihezi University)
  • Received : 2010.04.06
  • Accepted : 2010.07.28
  • Published : 2010.12.01

Abstract

The aim of this study was to evaluate, through the use of microsatellite markers, the current genetic diversity and the relationships of 375 individuals from 8 local sheep breeds reared in typical breeding farms in the northwest of China, and moreover, to offer a contribution towards genetic conservation decisions for the studied breeds. The expected heterozygosities and allelic richness for the 8 breeds varied from 0.474 to 0.623 and from 3.8 to 5.4, respectively. All the populations showed a significant deficit in heterozygosity and a relatively low level of genetic diversity. Furthermore, the high positive FIS value (ranging from 0.255 to 0.556) indicated inbreeding to be one of the main causes for high genetic homogeneity and lack of heterozygosity in all breeds. The clustering analysis performed with the DISPAN package showed that Aletai, Kazak, Bashibai and Bayinbuluke were grouped together, and Hetian, Qira black and Duolang were grouped together, which indicated that the relationship among breeds displayed some degree of consistency with their geographical distribution, production and origin. These findings indicate that improved conservation measures must be undertaken to avoid further losses of genetic diversity and minimize inbreeding represented by these breeds.

Keywords

References

  1. Arora, R. and S. Bhatia. 2009. Evaluation of genetic effects of demographic bottleneck in Muzzafarnagri sheep from india using microsatellite markers. Asian-Aust. J. Anim. Sci. 22(1):1-6. https://doi.org/10.5713/ajas.2009.60444
  2. Bhatia, S. and R. Arora. 2007. Genetic characterization and differentiation of Indian sheep breeds using microsatellite marker information. Korean J. Genet. 29(3):297-306.
  3. Cheng, S. R., Y. Z. Luo, Z. Liu, Z. W. Zhang, J. Hu and S. L. Fang. 2009. Microsatellite marker analyses on genetic diversity and phylogenetics in Gansu local breeds of sheeps. Acta Veterinaria & Zootechnica Sinica 41(4):19-23 (in Chinese with English abstract ).
  4. Chen, Y. C. 1995. The significance of conservation of domestic animal diversity in China. Biodiversity 3:143-146 (in Chinese).
  5. Chen, W. D. and X. T. Chen. 2002. Xinjiang sheep industry at present and counter measure. Grass-feeding Livestock 117:7-9 (in Chinese).
  6. Chen, S. Y., Z. Y. Duan, T. Sha, J. G. Xiangyu, S. F. Wu and Y. P. Zhang. 2006. Origin, genetic diversity, and population structure of Chinese domestic sheep. Gene 376:216-223. https://doi.org/10.1016/j.gene.2006.03.009
  7. Dalvit, C., E. Sacca, M. Cassandro, M. Gervaso, E. Pastore and E. Piasentier. 2008. Genetic diversity and variability in Alpine sheep breeds. Small Rumin. Res. 80:45-51. https://doi.org/10.1016/j.smallrumres.2008.09.005
  8. Dixit, S. P., N. K. Verma, R. A. K. Aggarwal, Sandeep Kumar, Ramesh Chander, M. K. Vyas and K. P. Singh. 2009. Genetic structure and differentiation of three Indian goat breeds. Asian-Aust. J. Anim. Sci. 22:1234-1240. https://doi.org/10.5713/ajas.2009.80510
  9. Gao, Z. Y., Q. Y. Yang, D. X. Ha, M. T. Mahe, S. H. Mirini, J. Yuan, C. S. Xu, J. F. Ri, J. G. Yu and L. N. Gu. 2008. Current status and prospect for selection of Qira Black sheep. China Anim. Husb. Vet. Med. 35(7):155-156 (in Chinese with English abstract).
  10. Glowatzki-Mullis, M. L., J. Muntwyler, E. Bäumle and C. Gaillard. 2008. Genetic diversity measures of Swiss goat breeds as decision-making support for conservation policy. Small Rumin. Res. 74:202-211. https://doi.org/10.1016/j.smallrumres.2007.07.002
  11. Goudet, J. 1995. FSTAT (version 1.2): A computer programme to calculate F-statistics. J. Hered. 86:485-486.
  12. Hao, H. Z., L. S. Zan, C. S. Liu, Z. G. Wang, G. X. Zhang, X. Han and R. C. Hao. 2009. Analysis of genetic diversity in 13 sheep breeds. Journal of Northwest A&F University 37:7-14 (in Chinese with English abstract ).
  13. Jiang, W. S. 2006. Current status and prospect for selection of Duolang sheep. China Herbivores 26(2):28-30 (in Chinese ).
  14. Kusza, S., I. Nagy, Z. Sasvári, A. Stagel, T. Nemeth, A. Molnar, K. Kume, Z. Bosze, A. Javor and S. Kukovics. 2008. Genetic diversity and population structure of Tsigai and Zackel type of sheep breeds in the Central-, Eastern- and Southern-European regions. Small Rumin. Res. 78:13-23. https://doi.org/10.1016/j.smallrumres.2008.04.002
  15. Ligda, C. H., J. Altarayrah, A. Georgoudis and ECONOGENE Consortium. 2009. Genetic analysis of Greek sheep breeds using microsatellite markers for setting conservation priorities. Small Rumin. Res. 83:42-48. https://doi.org/10.1016/j.smallrumres.2009.04.002
  16. Liu, Y. F., J. F. Gao, X. L. Pan, J. S. Dai and D. Q. Li. 1997. A study on preparation of DNA from sheep blood. Journal of Shihezi University (Natural Science). 1(2):136-138 (in Chinese with English abstract).
  17. Luo, Y. Z., S. R. Cheng, J. Hu, O. Hanotte and J. L. Han. 2009. Assessment of genetic relationships among the plateau merino populations in China using microsatellite DNA markers. Agric. Sci. China 42(2):669-676.
  18. Lv, S. J., Y. H. Ma, Y. Yang and S. M. Geng. 2006. Genetic diversity analysis on 7 indigenous sheep populations with microsatellite DNA in western China. Acta Ecologiae Animalis Domastici 27:18-22 (in Chinese with English abstract).
  19. Ma, Y. H., S. Q. Rao, S. J. Lu, G. Y. Hou, W. J. Guan, H. B. Li, X. Li, Q. J. Zhao and J. Guo. 2006. Phylogeography and origin of sheep breeds in Northern China. Conserv. Genet. 7:117-127. https://doi.org/10.1007/s10592-005-8670-z
  20. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genet. 89:583-590.
  21. Qi, C. N., J. J. Yang and L. Fang. 2007. Using polymorphism of blood protein to analyze the hereditary distance of Qira black sheep, Hetian sheep, and Karaku sheep. Journal of Tarim University 119:7-9 (in Chinese with English abstract).
  22. Qi, Y., J. Luo, X. F. Han, Y. Z. Zhu, C. Chen, J. X. Liu and H. J. Sheng. 2009. Genetic diversity and relationships of 10 Chinese goat breeds in the Middle and Western China. Small Rumin. Res. 82:88-93. https://doi.org/10.1016/j.smallrumres.2009.01.015
  23. Ota, T. 1993. DISPAN: Genetic distance and phylogenetic analysis. Pennsylvania State University, PA.
  24. Qu, D. Y., R. J. Chen, Y. J. Mao, C. C. Sun, Y. Gen, D. J. Tian, L. Chen, X. Y. Zhao and Z. P. Yang. 2009. Genetic polymorphic analysis and forecast of heterosis of sheep in Ningxia Autonom ous Region. Acta Veterinaria & Zootechnica Sinica 40(1):1-6 (in Chinese with English abstract ).
  25. Raymond, M. and F. Rousset. 1995. Genepop (version 1.2), population genetics software for exact tests and ecumenicism. J. Hered. (86):248-249.
  26. Santos-Silva, F., R. S. Ivo, M. C. O. Sousa, M. I. Carolino, C. Ginja and L. T. Gama. 2008. Assessing genetic diversity and differentiation in Portuguese coarse-wool sheep breeds with microsatellite markers. Small Rumin. Res. 78:32-40. https://doi.org/10.1016/j.smallrumres.2008.04.006
  27. Sun, W., H. Chang, D. J. Ji, X. J. Liao, L. Du, S. X. Lu and T. kenji. 2007. Analysis on genetic diversity and isolation mechanism by distance of different ecological type sheep breeds in Mongolia sheep group. J. Genet. Genomics 34:1001-1009. https://doi.org/10.1016/S1673-8527(07)60113-1
  28. Takahashi, H., D. Nyamsamba, B. Mandakh, Y. Zagdsuren, T. Amano, K. Nomura, M. Yokohama, S. Ito and M. Minezawa. 2008. Genetic structure of Mongolian goat populations using microsatellite loci analysis. Asian-Aust. J. Anim. Sci. 21:947-953. https://doi.org/10.5713/ajas.2008.70285
  29. Xiao, F., Y. Shi, Y. Fu and J. F. Wang. 2009. The overview of conservation of local sheep in Xinjiang province. Heilongjiang Animal Science and Veterinary Medicine. 12:42-43 (in Chinese).

Cited by

  1. Mitochondrial DNA diversity and the origin of Chinese indigenous sheep vol.45, pp.8, 2013, https://doi.org/10.1007/s11250-013-0420-5
  2. Genetic Diversity and Phylogenetic Evolution of Tibetan Sheep Based on mtDNA D-Loop Sequences vol.11, pp.7, 2016, https://doi.org/10.1371/journal.pone.0159308
  3. Genetic diversity studies using microsatellite markers and their contribution in supporting sustainable sheep breeding programs: A review vol.4, pp.1, 2018, https://doi.org/10.1080/23311932.2018.1459062
  4. Phylogeography and Phylogenetic Evolution in Tibetan Sheep Based on MT-CYB Sequences vol.10, pp.7, 2010, https://doi.org/10.3390/ani10071177