References
- FAO/IAEA Mutant Variety and Genetic Stock Database. http://mvgs.iaea.org/
- Buckling, A., R. Craig Maclean, M. A. Brockhurst, and N. Colegrave. 2009. The Beagle in a bottle. Nature 457: 824-829. https://doi.org/10.1038/nature07892
- Cairns, J., J. Overbaugh, and S. Miller. 1988. The origin of mutants. Nature 335: 142-145. https://doi.org/10.1038/335142a0
- Datsenko, K. A. and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U S A 97: 6640-6645. https://doi.org/10.1073/pnas.120163297
- Edwards, J. S., R. U. Ibarra, and B. O. Palsson. 2001. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat. Biotechnol. 19: 125-130. https://doi.org/10.1038/84379
- Ellis, H. M., D. Yu, T. DiTizio, and D. L. Court. 2001. High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proc. Natl. Acad. Sci. U S A 98: 6742-6746. https://doi.org/10.1073/pnas.121164898
- Fong, S. S., A. P. Burgard, C. D. Herring, E. M. Knight, F. R. Blattner, C. D. Maranas, and B. O. Palsson. 2005. In silico design and adaptive evolution of Escherichia coli for production of lactic acid. Biotechnol. Bioeng. 91: 643-648. https://doi.org/10.1002/bit.20542
- Friedland, W., P. Jacob, P. Bernhardt, H. G. Paretzke, and M. Dingfelder. 2003. Simulation of DNA damage after proton irradiation. Radiat. Res. 159: 401-410. https://doi.org/10.1667/0033-7587(2003)159[0401:SODDAP]2.0.CO;2
- Goodhead, D. T. 1994. Initial events in the cellular effects of ionizing radiations: clustered damage in DNA. Int. J. Radiat. Biol. 65: 7-17. https://doi.org/10.1080/09553009414550021
- Gu, S. B., S. C. Li, H. Y. Feng, Y. Wu, and Z. L. Yu. 2008. A novel approach to microbial breeding-low-energy ion implantation. Appl. Microbiol. Biotechnol. 78: 201-209. https://doi.org/10.1007/s00253-007-1312-2
- Hada, M. and B. M. Sutherland. 2006. Spectrum of complex DNA damages depends on the incident radiation. Radiat. Res. 165: 223-230. https://doi.org/10.1667/RR3498.1
- Hada, M. and A. G. Georgakilas. 2008. Formation of clustered DNA damage after high-LET irradiation: a review. J. Radiat. Res. 49: 203-210. https://doi.org/10.1269/jrr.07123
-
Hoebee, B., J. Brouwer, P. van de Putte, H. Loman, and J. Retel. 1988.
$^{60}Co$ gamma-rays induce predominantly C/G to G/C transversions in double-stranded M13 DNA. Nucleic Acids Res. 16: 8147-8156. https://doi.org/10.1093/nar/16.16.8147 - Hsiao, Y. and R. D. Stewart. 2008. Monte Carlo simulation of DNA damage induction by x-rays and selected radioisotopes. Phys. Med. Biol. 53: 233-244. https://doi.org/10.1088/0031-9155/53/1/016
- http://www.dt.co.kr/contents.html?article_no=2008110402019922732016.
- Jeong, H. and J. Han. 2010. Enhancing the 1-butanol tolerance in Escherichia coli through repetitive proton beam irradiation. J. Kor. Phy. Soc. 56: 2041-2045. https://doi.org/10.3938/jkps.56.2041
- Jung, I. L., K. H. Phyo, K. C. Kim, H. K. Park, and I. G. Kim. 2005. Spontaneous liberation of intracellular polyhydroxybutyrate granules in Escherichia coli. Res. Microbiol. 156: 865-873. https://doi.org/10.1016/j.resmic.2005.04.004
- Kanbashi, K., X. Wang, J. Komura, T. Ono, and K. Yamamoto. 1997. Frameshifts, base substitutions and minute deletions constitute X-ray-induced mutations in the endogenous tonB gene of Escherichia coli K12. Mutat. Res. 385: 259-267. https://doi.org/10.1016/S0921-8777(97)00056-6
- Kaul, B. L. 1970. Studies on radioprotective role of dimethyl sulfoxide in plants. Radiation Botany 10: 69-78. https://doi.org/10.1016/S0033-7560(70)80053-9
- Knoshaug, E. P. and M. Zhang. 2009. Butanol tolerance in a selection of microorganisms. Appl. Biochem. Biotechnol. 153: 13-20. https://doi.org/10.1007/s12010-008-8460-4
- Monobe, M., A. Uzawa, M. Hino, K. Ando, and S. Kojima. 2005. Glycine betaine, a beer component, protects radiationinduced injury. J. Radiat. Res. 46: 117-121. https://doi.org/10.1269/jrr.46.117
- Moos, W. S. and S. E. Kim. 1966. Radioprotective effect of topically applied dimethyl sulfoxide on mice. Experientia 22: 814. https://doi.org/10.1007/BF01897433
- Muller, H. J. 1927. Artificial Transmutation of the Gene. Science 66: 84-87. https://doi.org/10.1126/science.66.1699.84
- Park, H. S., S. H. Nam, J. K. Lee, C. N. Yoon, B. Mannervik, S. J. Benkovic, and H. S. Kim. 2006. Design and evolution of new catalytic activity with an existing protein scaffold. Science 311: 535-538. https://doi.org/10.1126/science.1118953
- Park, J. H., S. Y. Lee, T. Y. Kim, and H. U. Kim. 2008. Application of systems biology for bioprocess development. Trends Biotechnol. 26: 404-412. https://doi.org/10.1016/j.tibtech.2008.05.001
- Posfai, G., G. Plunkett, 3rd, T. Feher, D. Frisch, G. M. Keil, K. Umenhoffer, V. Kolisnychenko, B. Stahl, S. S. Sharma, M. de Arruda, V. Burland, S. W. Harcum, and F. R. Blattner. 2006. Emergent properties of reduced-genome Escherichia coli. Science 312: 1044-1046. https://doi.org/10.1126/science.1126439
- Reed, J. L. and B. O. Palsson. 2003. Thirteen years of building constraint-based in silico models of Escherichia coli. J. Bacteriol. 185: 2692-2699. https://doi.org/10.1128/JB.185.9.2692-2699.2003
- Romero, P. A. and F. H. Arnold. 2009. Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell Biol. 10: 866-876. https://doi.org/10.1038/nrm2805
- Rosenberg, S. M. 2001. Evolving responsively: adaptive mutation. Nat. Rev. Genet. 2: 504-515.
- Rust, D. M. 1992. Solar flares: An overview. Adv. Space Res. 12: 289-301.
- Sapora, O., F. Barone, M. Belli, A. Maggi, M. Quintiliani, and M. A. Tabocchini. 1991. Relationships between cell killing, mutation induction and DNA damage in X-irradiated V79 cells: the influence of oxygen and DMSO. Int. J. Radiat. Biol. 60: 467-482. https://doi.org/10.1080/09553009114552321
- Sargentini, N. J. and K. C. Smith. 1994. DNA sequence analysis of gamma-radiation (anoxic)-induced and spontaneous lacId mutations in Escherichia coli K-12. Mutat. Res. 309: 147-163. https://doi.org/10.1016/0027-5107(94)90088-4
- Sharan, S. K., L. C. Thomason, S. G. Kuznetsov, and D. L. Court. 2009. Recombineering: a homologous recombinationbased method of genetic engineering. Nat. Protoc. 4: 206-223. https://doi.org/10.1038/nprot.2008.227
- Shikazono, N., M. Noguchi, K. Fujii, A. Urushibara, and A. Yokoya. 2009. The yield, processing, and biological consequences of clustered DNA damage induced by ionizing radiation. J. Radiat. Res. 50: 27-36. https://doi.org/10.1269/jrr.08086
- Singh, D. R., J. M. Mahajan, and D. Krishnan. 1976. Effect of dimethyl sulfoxide (DMSO) on radiation-induced heteroallelic reversion in diploid yeast. Mutat. Res. 37: 193-200. https://doi.org/10.1016/0027-5107(76)90033-6
- Stadler, L. J. 1928. Mutations in Barley Induced by X-Rays and Radium. Science 68: 186-187. https://doi.org/10.1126/science.68.1756.186
- Stemmer, W. P. 1994. Rapid evolution of a protein in vitro by DNA shuffling. Nature 370: 389-391. https://doi.org/10.1038/370389a0
- Takimoto, K., K. Uchino, K. Ishizaki, and M. Ikenaga. 1991. Specificity of mutational DNA sequence changes induced by X-rays in the cloned Escherichia coli crp gene. Mutat. Res. 254: 199-206. https://doi.org/10.1016/0921-8777(91)90057-V
- Tanaka, A., N. Shikazono and Y. Hase. Studies on biological effects of ion beams on lethality, molecular nature of mutation, mutation rate, and spectrum of mutation phenotype for mutation breeding in higher plants. J. Radiat. Res. 51: 223-233.
- Tanaka, A., A. Sakamoto, Y. Ishigaki, O. Nikaido, G. Sun, Y. Hase, N. Shikazono, S. Tano, and H. Watanabe. 2002. An ultraviolet-B-resistant mutant with enhanced DNA repair in Arabidopsis. Plant Physiol. 129: 64-71. https://doi.org/10.1104/pp.010894
- Wang, H. H., F. J. Isaacs, P. A. Carr, Z. Z. Sun, G. Xu, C. R. Forest, and G. M. Church. 2009. Programming cells by multiplex genome engineering and accelerated evolution. Nature 460: 894-898. https://doi.org/10.1038/nature08187
- Yamaguchi, H., S. Nagatomi, T. Morishita, K. Degi, A. Tanaka, N. Shikazono, and Y. Hase. 2003. Mutation induced with ion beam irradiation in rose. Nucl. Instrum. Meth. B 206: 561-564. https://doi.org/10.1016/S0168-583X(03)00825-5
- Yu, B. J., B. H. Sung, M. D. Koob, C. H. Lee, J. H. Lee, W. S. Lee, M. S. Kim, and S. C. Kim. 2002. Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system. Nat. Biotechnol. 20: 1018-1023. https://doi.org/10.1038/nbt740
- Yu, Z., J. Deng, J. He, Y. Huo, Y. Wu, X. Wang, and G. Lui. 1991. Mutation breeding by ion implantation. Nucl. Instrum. Meth. B 59-60: 705-708. https://doi.org/10.1016/0168-583X(91)95307-Y
- Yu, Z. 2007. Study on the interaction of low-energy ions with organisms. Surf. Coat. Tech. 201: 8006-8013. https://doi.org/10.1016/j.surfcoat.2006.09.316
- Zengliang, Y., Y. Jianbo, W. Yuejin, C. Beijiu, H. Jianjun, and H. Yuping. 1993. Transferring Gus gene into intact rice cells by low energy ion beam. Nucl. Instrum. Meth. B 80-81: 1328-1331. https://doi.org/10.1016/0168-583X(93)90793-6
- Zengliang, Y. Introduction to Ion Beam Biotechnology, Springer Science+Buisiness Media Inc., New York, 2006.