참고문헌
- Bebenek K, Tissier A, Frank EG, McDonald JP, Prasad R, Wilson SH, Woodgate R, Kunkel TA. 5'-Deoxyribose phosphate lyase activity of human DNA polymerase iota in vitro. Science 2001. 291: 2156-2159. https://doi.org/10.1126/science.1058386
- Berthet N, Roupioz Y, Constant JF, Kotera M, Lhomme J. Translesional synthesis on DNA templates containing the 2'-deoxyribonolactone lesion. Nucleic Acids Res. 2001. 29: 2725-2732. https://doi.org/10.1093/nar/29.13.2725
- Chowdhury G, Junnotula V, Daniels JS, Greenberg MM, Gates KS. DNA strand damage product analysis provides evidence that the tumor cell-specific cytotoxin tirapazamine produces hydroxyl radical and acts as a surrogate for O(2). J Am Chem Soc. 2007. 129: 12870-12877. https://doi.org/10.1021/ja074432m
- Copeland WC, Longley MJ. DNA polymerase gamma in mitochondrial DNA replication and repair. Scientific World J.2003. 3: 34-44. https://doi.org/10.1100/tsw.2003.09
- Costa M. DNA-protein complexes induced by chromate and other carcinogens. Environ Health Perspect. 1991. 92: 45-52. https://doi.org/10.2307/3431136
- David SS, O'Shea VL, Kundu S. Base-excision repair of oxidative DNA damage. Nature 2007. 447: 941-950. https://doi.org/10.1038/nature05978
- DeMott MS, Beyret E, Wong D, Bales BC, Hwang JT, Greenberg MM, Demple B. Covalent trapping of human DNA polymerase beta by the oxidative DNA lesion 2-deoxyribonolactone. J Biol Chem. 2002. 277: 7637-7640. https://doi.org/10.1074/jbc.C100577200
- Demple B, DeMott MS. Dynamics and diversions in base excision DNA repair of oxidized abasic lesions. Oncogene 2002. 21: 8926-8934. https://doi.org/10.1038/sj.onc.1206178
- Demple B, Sung, JS. Molecular and biological roles of Ape1 protein in mammalian base excision repair. DNA Repair (Amst) 2005. 4: 1442-1449. https://doi.org/10.1016/j.dnarep.2005.09.004
- Fan J, Wilson DM 3rd. Protein-protein interactions and posttranslational modifications in mammalian base excision repair. Free Radical Biol Med. 2005. 38: 1121-1138. https://doi.org/10.1016/j.freeradbiomed.2005.01.012
- Farge G, Pham XH, Holmlund T, Khorostov I, Falkenberg M. The accessory subunit B of DNA polymerase γ is required for mitochondrial replisome function. Nucleic Acids Res. 2007. 35: 902-911. https://doi.org/10.1093/nar/gkl1116
-
Faure V, Constant JF, Dumy P, Saparbaev M. 2'-deoxyribonolactone lesion produces
$G{\rightarrow}A$ transitions in Escherichia coli. Nucleic Acids Res. 2004. 32: 2937-2946. https://doi.org/10.1093/nar/gkh622 - Friedberg EC. DNA damage and repair. Nature 2003. 421: 436 -440. https://doi.org/10.1038/nature01408
- Halliwell B, Gutteridge JM, Cross CE. Free radicals, antioxidants, and human disease: where are we now- J Lab Clin Med. 1992. 119: 598-620.
- Kappen LS, Goldberg IH. Neocarzinostatin acts as a sensitive probe of DNA microheterogeneity: switching of chemistry from C-1' to C-4' by a GT mismatch 5' to the site of DNA damage. Proc Natl Acad Sci USA 1992. 89: 6706-6710.
- Kow YW, Bao G, Minesinger B, Jinks-Robertson S, Siede W, Jiang YL, Greenberg MM. Mutagenic effects of abasic and oxidized abasic lesions in Saccharomyces cerevisiae. Nucleic Acids Res. 2005. 33: 6196-6202. https://doi.org/10.1093/nar/gki926
- Kroeger KM, Hashimoto M, Kow YW, Greenberg MM. Crosslinking of 2-deoxyribonolactone and its beta-elimination product by base excision repair enzymes. Biochemistry 2003. 42: 2449-2455. https://doi.org/10.1021/bi027168c
- Kroeger KM, Jiang YL, Kow YW, Goodman MF, Greenberg MM. Mutagenic effects of 2-deoxyribonolactone in Escherichia coli. An abasic lesion that disobeys the A-rule. Biochemistry 2004. 43: 6723-6733. https://doi.org/10.1021/bi049813g
- Krokan HE, Nilsen H, Skorpen F, Otterlei M, Slupphaug G. Base excision repair of DNA in mammalian cells. FEBS Lett. 2000. 476: 73-77. https://doi.org/10.1016/S0014-5793(00)01674-4
- Luch A. Nature and nurture - lessons from chemical carcinogenesis. Nat Rev Cancer 2005. 5: 113-125. https://doi.org/10.1038/nrc1546
- Lim SE, Longley MJ, Copeland WC. The mitochondrial P55 accessory subunit of human DNA polymerase γ enhances DNA binging, promotes processive DNA synthesis, and confers N-ethylmaleimide resistance. J Biol Chem. 1999. 274: 38197-38203. https://doi.org/10.1074/jbc.274.53.38197
- Lindahl T. Instability and decay of the primary structure of DNA. Nature 1993. 362: 709-715. https://doi.org/10.1038/362709a0
- Liu P, Qian L, Sung JS, de Souza-Pinto NC, Zheng L, Bogenhagen DF, Bohr VA, Wilson DM 3rd, Shen B, Demple B. Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria. Mol Cell Biol. 2008. 28: 4975-4987. https://doi.org/10.1128/MCB.00457-08
- Longley MJ, Prasad R, Srivastava DK, Wilson SH, Copeland WC. Identification of 5'-deoxyribose phosphate lyase activity in human DNA polymerase gamma and its role in mitochondrial base excision repair in vitro. Proc Natl Acad Sci USA 1998. 95: 12244-12248.
-
Matsumoto Y, Kim K. Excision of deoxyribose phosphate residues by DNA polymerase
$\beta$ during DNA repair. Science 1995. 269: 699-702. https://doi.org/10.1126/science.7624801 - Miller CA 3rd, Costa M. Immunodetection of DNA-protein crosslinks by slot blotting. Mutat Res. 1990. 234: 97-106. https://doi.org/10.1016/0165-1161(90)90036-N
- Mol CD, Izumi T, Mitra S, Tainer JA. DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination. Nature 2000. 403: 451-456. https://doi.org/10.1038/35000249
- Nakano T, Terato H, Asagoshi K, Masaoka A, Mukuta M, Ohyama Y, Suzuki T, Makino K, Ide H. DNA-protein cross-link formation mediated by oxanine. A novel genotoxic mechanism of nitric oxide-induced DNA damage. J Biol Chem. 2003. 278: 25264-25272.
- Nakamura J, Swenberg, JA. Endogenous apurinic/apyrimidinic sites in genomic DNA of mammalian tissues. Cancer Res. 1999. 59: 2522-2526.
- Paustenbach DJ, Finley BL, Kasew S. Biological relevance and consequences of chemical- or metal-induced DNA crosslinking. Proc Soc Exp Biol Med. 1996. 211: 211-217.
- Pratviel G, Pitie M, Bernadou J, Meunier B. Mechanism of DNA cleavage by cationic manganese porphyrins: hydroxylations at the 1'-carbon and 5'-carbon atoms of deoxyriboses as initial damages. Nucleic Acids Res. 1991. 19: 6283-6288. https://doi.org/10.1093/nar/19.22.6283
- Richter W, Jury KM, Loeffler D, Manfras BJ, Eiermann TH, Boehm BO. Immunoglobulin variable gene analysis of human autoantibodies reveals antigen-driven immune response to glutamate decarboxylase in type 1 diabetes mellitus. Eur J Immunol. 1995. 25: 1703-1712. https://doi.org/10.1002/eji.1830250633
- Schuessler H, Jung E. Protein-DNA crosslinks induced by primary and secondary radicals. Int J Radiat Biol. 1989. 56: 423-435. https://doi.org/10.1080/09553008914551581
- Sigman DS, Mazumder A, Perrin DM. Chemical nucleases. Chem Rev. 1993. 93: 2295-2316. https://doi.org/10.1021/cr00022a011
- Stadtman ER, Berlett BS. Reactive oxygen-mediated protein oxidation in aging and disease. Drug Metab Rev. 1998. 30: 225-243. https://doi.org/10.3109/03602539808996310
-
Sung JS, DeMott MS, Demple B. Long-patch base excision DNA repair of 2-deoxyribonolactone prevents the formation of DNA-protein cross-links with DNA polymerase
$\beta$ . J Biol Chem. 2005. 280: 39095-39103. https://doi.org/10.1074/jbc.M506480200 - Sung JS, Demple B. Roles of base excision repair subpathways in correcting oxidized abasic sites in DNA. FEBS J. 2006a. 273: 1620-1629. https://doi.org/10.1111/j.1742-4658.2006.05192.x
- Sung JS, Demple B. Analysis of base excision DNA repair of the oxidative lesion 2-deoxyribonolactone and the formation of DNA-protein cross-links. Methods Enzymol. 2006b. 408: 48 -64. https://doi.org/10.1016/S0076-6879(06)08004-9
- Sung JS, Mosbaugh DW. Escherichia coli uracil- and ethenocytosine-initiated base excision DNA repair: ratelimiting step and patch size distribution. Biochemistry 2003. 42: 4613-4625. https://doi.org/10.1021/bi027115v
- Szczesny B, Tann AW, Longley MJ, Copeland WC, Mitra S. Long patch base excision repair in mammalian mitochondrial genomes. J Biol Chem. 2008. 283: 26349-26356. https://doi.org/10.1074/jbc.M803491200
- Xu YJ, DeMott MS, Hwang JT, Greenberg MM, Demple B. Action of human apurinic endonuclease (Ape1) on C1'- oxidized deoxyribose damage in DNA. DNA Repair (Amst) 2003. 2: 175-185. https://doi.org/10.1016/S1568-7864(02)00194-5