Acknowledgement
Supported by : National Institute of Biological Resources
References
- Abascal, F., Zardoya, R., and Posada, D. (2005). ProTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105 https://doi.org/10.1093/bioinformatics/bti263
- Adachi, J., and Hasegawa, M. (1996). Model of amino acid substitution in proteins encoded by mitochondrial DNA. J. Mol. Evol. 42, 459-468 https://doi.org/10.1007/BF02498640
- Akaike, H. (1974). A new look at the statistical model identification. IEEE Trans. Autom. Contr. 19, 716-723 https://doi.org/10.1109/TAC.1974.1100705
- Anderson, S., Bankier, A.T., Barrell, B.G., de Bruijin, M.H.L., Droujn, A.R.J., Eperon, I.C., Nierlich, D.P., Roe, B.A., Sanger, F., Schreier, P.H., et al. (1981). Sequence and organization of the human mitochondrial genome. Nature 290, 457-465 https://doi.org/10.1038/290457a0
- Arnoldi, F.G., Ogoh, K., Ohmiya, Y., and Viviani, V.R. (2007). Mitochondrial genome sequence of the Brazilian luminescent click beetle Pyrophorus divergens (Coleoptera: Elateridae): mitochondrial genes utility to investigate the evolutionary history of Coleoptera and its bioluminescence. Gene 405, 1-9 https://doi.org/10.1016/j.gene.2007.07.035
- Avise, J.C. (1994). Molecular markers, natural history and evolution (New York: Champman & Hall)
- Bae, J.S., Kim, I., Sohn, H.D., and Jin, B.R. (2004). The mitochondrial genome of the firefly, Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects. Mol. Phylogenet. Evol. 32, 978-985 https://doi.org/10.1016/j.ympev.2004.03.009
- Beutel, R.G. (1995). Phylogenetic analysis of Elateriformia (Coleoptera: Polyphaga) based on larval characters. J. Zool. Syst. Evol. Res, 33, 145-171 https://doi.org/10.1111/j.1439-0469.1995.tb00969.x
- Beutel, R.G. (1997). Uber phylogenese und evolution der Coleoptera (Insecta), insbesondere der Adephaga. Verh. Naturwiss. Ver. Hamburg 31, 1-164
- Beutel, R., and Haas, F. (2000). Phylogenetic relationships of the suborders of Coleoptera (Insecta). Cladistics 16, 103-141 https://doi.org/10.1111/j.1096-0031.2000.tb00350.x
- Bocakova, M., Bocak, L., Hunt, T., Teravainen, M., and Vogler, A.P. (2007). Molecular phylogenetics of Elateriformia (Coleoptera): evolution of bioluminescence and neoteny. Cladistics 23, 477-496 https://doi.org/10.1111/j.1096-0031.2007.00164.x
- Boore, J.L. (1999). Animal mitochondrial genomes. Nucleic Acids Res. 27, 1767-1780 https://doi.org/10.1093/nar/27.8.1767
- Brehm, A., Harris, D.J., Hernandez, M., Cabrera, V.M., Larruga, J.M., Pinto, F.M., and Gonzalez, A.M. (2001). Structure and evolution of the mitochondrial DNA complete control region in the Drosophila subobscura subgroup. Insect Mol. Biol. 10, 573-578 https://doi.org/10.1046/j.0962-1075.2001.00295.x
- Brodsky, L.I., Vasiliev, A.V., Kalaidzidis, Y.L., Osipov, Y.S., Tatuzov, A.R.L., and Feranchuk, S.I. (1992). GeneBee: the program package for biopolymer structure analysis. Dimacs 8, 127-139
- Cameron, S.L., and Whiting, M.F. (2008). The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths. Gene 408, 112-123 https://doi.org/10.1016/j.gene.2007.10.023
- Cantatore, P., Gadaleta, M.N., Roberti, M., Saccone, C., and Wilson, A.C. (1987). Duplication and remodeling of tRNA genes during the evolutionary rearrangement of mitochondrial genomes. Nature 329, 853-855 https://doi.org/10.1038/329853a0
- Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic tool. Curr. Opin. Genet. Dev. 8, 668-674
- Caterino, M.S., Shull, V.L., Hammond, P.M., and Vogler, A.P. (2002). Basal relationships of Coleoptera inferred from 18S rDNA sequences. Zool. Scr. 31, 41-49 https://doi.org/10.1046/j.0300-3256.2001.00092.x
- Caterino, M.S., Hunt, T., and Vogler, A.P. (2005). On the constitution and phylogeny of Staphyliniformia (Insecta: Coleoptera). Mol. Phylogenet. Evol. 34, 655-672 https://doi.org/10.1016/j.ympev.2004.11.012
- Cha, S.Y., Yoon, H.J., Lee, E.M., Yoon, M.H., Hwang, J.S., Jin, B.R., Han, Y.S., and Kim, I. (2007). The complete nucleotide sequence and gene organization of the mitochondrial genome of the bumblebee, Bombus ignitus (Hymenoptera: Apidae). Gene 392, 206-220 https://doi.org/10.1016/j.gene.2006.12.031
- Crozier, R.H., and Crozier, Y.C. (1993). The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics 133, 97-117
- Dowton, M., Castro, L.R., Campbell, S.L., Bargon, S.D., and Austin, A.D. (2003). Frequent mitochondrial gene rearrangements at the hymenopteran nad3-nad5 junction. J. Mol. Evol. 56, 517-526 https://doi.org/10.1007/s00239-002-2420-3
- Fauron, C.M.R., and Wolstenholme, D.R. (1980). Extensive diversity among Drosophila species with respect to nucleotide sequences within the adenine+thymine-rich region of mitochondrial DNA molecules. Nucleic Acids Res. U, 2439-2452 https://doi.org/10.1093/nar/8.11.2439
- Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791 https://doi.org/10.2307/2408678
- Folmer, O., Black, M., Hoeh, W., Lutz, R., and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3, 294-299
- Friedrich, M., and Muquim, N. (2003). Sequence and phylogenetic analysis of the complete mitochondrial genome of the flour beetle Trivolium castanaeum Mol. Phylogenet. Evol. 26, 502-512 https://doi.org/10.1016/S1055-7903(02)00335-4
- Guindon, S., Lethiec, F., Duroux, P., and Gascuel, O. (2005). PHYML: online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 33, W557-559 https://doi.org/10.1093/nar/gki352
- Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41, 95-98
- Hebert, P.D.A., Cywinska, A., Ball, S.L., and deWaard, J.R. (2003). Biological identifications through DNA barcodes. Proc. R. Soc. Lond. B 270, 313-322 https://doi.org/10.1098/rspb.2002.2218
- Hong, M.Y., Lee, E.M., Jo, Y.H., Park, H.C., Kim, S.R., Hwang, J.S., Jin, B.R., Kang, P.D., Kim, K.-G., Han, Y.S., et al. (2008). Complete nucleotide sequence and organization of the mito-genome of the silk moth Caligula boisduvalii (Lepidoptera: Saturniidae) and comparison with other lepidopteran insects. Gene 413, 49-57 https://doi.org/10.1016/j.gene.2008.01.019
- Hong, M.Y., Jeong, H.C., Kim, M.J., Jeong, H.U., Lee, S.H., and Kim, I. (2009). Complete mitogenome sequence of the jewel beetle, chrysochroa fulgidissma (Coleoptera: Buprestidae). Mitochondrial DNA. (in press) (DOI 10.1080/19401730802644978)
- Huelsenbeck, J.P., and Ronquist, F. (2001). MrBayes: Bayesian inference of phylogeny. Bioinformatics 17, 754-755 https://doi.org/10.1093/bioinformatics/17.8.754
- Hunt, T., Bergsten, J., Levkanicova, Z., Papadopoulou, A., St. John, O., Wild, R., Hammond, P.M., Ahrens, D., Balke, M., Caterino, M.S., et al. (2007). A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 318, 1913-1916 https://doi.org/10.1126/science.1146954
- Hwang, U.W., Friedrich, M., Tautz, D., Park, C.J., and Kim, W. (2001). Mitochondrial protein phylogeny joins myriapods with chelicerates. Nature 413, 154-157 https://doi.org/10.1038/35093090
- Inohira, K., Hara, T., and Matsuura, E.T. (1997). Nucleotide sequence divergence in the A+T-rich region of mitochondrial DNA in Drosophila simulans and Drosophila mauritiana. Mol. Biol. Evol. 14, 814-822 https://doi.org/10.1093/oxfordjournals.molbev.a025822
- Joyce, D.A., and Pullin, A.S. (2004). Using genetics to inform reintroduction strategies for the chequered skipper butterfly (Carterocephalus Palaemon, Pallas) in England. J. Insect Conserv. 8, 69-74 https://doi.org/10.1023/B:JICO.0000027510.59074.16
- Kim, I., Lee, E.M., Seol, K.Y., Yun, E.Y., Lee, Y.B., Hwang, J.S., and Jin, B.R. (2006). The mitochondrial genome of the Korean hairstreak, Coreana raphaelis(Lepidoptera: Lycaenidae). Insect Mol. Biol. 15, 217-225 https://doi.org/10.1111/j.1365-2583.2006.00630.x
- Kim, S.R., Kim, M.I., Hong, M.Y., Kim, K.Y., Kang, P.D., Hwang, J.S., Han, Y.S., Jin, B.R., and Kim, I. (2009). The complete mitogenome sequence of the Japanese oak silkmoth, antheraea uamamai(Lepidoptera: Saturniidae). Mol. Biol. Rep. (in press) (DOI 10.1007/s11033-008-9393-2)
- Kukalova-Peck, J., and Lawrence, J.F. (1993). Evolution of the hind wing in Coleoptera. Can. Entomol. 125, 181-258 https://doi.org/10.4039/Ent125181-2
- Lawrence, J.F. (1982). Coleoptera. In Synopsis and Classificatiion of Living Organisms, S. Parker, ed. (New York, USA: McGraw-Hill), pp. 482-553
- Lawrence, J.F., and Newton, A.F. (1982). Evolution and classification of beetles. Annu. Rev. Ecol. Syst. 13, 261-290 https://doi.org/10.1146/annurev.es.13.110182.001401
- Lewis, D.L., Farr, C.L., and Kaguni, L.S. (1995). Drosophila melanogaster mitochondrial DNA: completion of the nucleotide sequence and evolutionary comparisons. Insect Mol. Biol. 4, 263-278 https://doi.org/10.1111/j.1365-2583.1995.tb00032.x
- Li, X., Ogoh, K., Ohba, N., Liang, X., and Ohmiya, Y. (2007). Mitochondrial genomes of two luminous beetles, Rhagophthalmus lufengensis and R. ohbai (Arthropoda, Insecta, Coleoptera). Gene 392, 196-205 https://doi.org/10.1016/j.gene.2006.12.017
- Lowe, T.M., and Eddy, S.R. (1997). tRNA-scan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 https://doi.org/10.1093/nar/25.5.955
- Marvaldi, A.E., Duckett, C.N., Kjer, K.M., and Gillespie, J.J. (2008). Structural alignment of 18S and 28S rDNA sequences provides insights into phylogeny of Phytophaga (Coleoptera: Curculionoidea and Chrysomeloidea). Zool. Scr. 38, 63-77 https://doi.org/10.1111/j.1463-6409.2008.00360.x
- Monforte, A., Barrio, E., and Latorre, A. (1993). Characterization of the= length polymorphism in the A+T-rich region of the Drosophila obscura group species. J. Mol. Evol. 36, 214-223 https://doi.org/10.1007/BF00160476
- Moritz, C., Dowling, T.E., and Brown, W.M. (1987). Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18, 269-292 https://doi.org/10.1146/annurev.es.18.110187.001413
- Murata, K., Satou, M., Matsushima, K., Satake, S., and Yamamoto, Y. (2004). Retrospective estimation of genetic diversity of an extinct oriental white stork (Ciconia boyciana) population in Japan using mitochondrial specimens and implications for reintroduction programs. Conserv. Genetics 5, 553-560 https://doi.org/10.1023/B:COGE.0000041022.71104.1f
- Nam, S.H. (1996). The insects of Korea (Seoul, Korea: Kyo-Hak Publishing Co.)
- Nardi, F., Carapelli, A., Dallai, R., and Frati, F. (2003). The mitochondrial genome of the olive fly Bactrocera oleae: two haplotypes from distant geographical locations. Insect Mol. Biol. 12, 605-611 https://doi.org/10.1046/j.1365-2583.2003.00445.x
- Ojala, D., Montoya, J., and Attardi, G. (1981). tRNA punctuation model of RNA processing in human mitochondria. Nature 290, 470-474 https://doi.org/10.1038/290470a0
- Rand, D.M., and Harrison, R.G. (1989). Molecular population genetics of mtDNA size variation in crickets. Genetics 121, 551-569
- Renfu, S., Nick, J.H., Campbell, H., and Barker, S.C. (2001). Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera). Mol. Biol. Evol. 18, 858-865 https://doi.org/10.1093/oxfordjournals.molbev.a003867
- Salvato, P., Simonato, M., Battisti, A., and Negrisolo, E. (2008). The complete mitochondrial genome of the bag-shelter moth Ochrogaster Iunifer (Lepidoptera, Notodontidae). BMC Genomics 9, 331 https://doi.org/10.1186/1471-2164-9-331
- Schultheis, A.S., Weigt, L.A., and Hendricks, A.C. (2002). Arrangement and structural conservation of the mitochondrial control region of two species of Plecoptera: utility of tandem repeatcontaining regions in studies of population genetics and evolutionary history. Insect Mol. Biol. 11, 605-610 https://doi.org/10.1046/j.1365-2583.2002.00371.x
- Shao, R., Campbell, N.J.H., and Barker, S.C. (2001). Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, heterodozus macropus (Phthiraptera). Mol. Biol. Evol. 18, 858-865 https://doi.org/10.1093/oxfordjournals.molbev.a003867
- Sheffield, N.C., Song, H., Cameron, S.L., and Whiting, M.F. (2008). A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles. Mol. Biol. Evol. 25, 2499-2509 https://doi.org/10.1093/molbev/msn198
- Stewart, J.B., and Beckenbach, A.T. (2003). Phylogenetic and genomic analysis of the complete mitochondrial DNA sequence of the spotted asparagus beetle Crioceris duodecimpunctata. Mol. Phylogenet. Evol. 26, 513-526 https://doi.org/10.1016/S1055-7903(02)00421-9
- Swofford, D.L. (2002). PAUP*. Phylogenetic analysis using parsimony (*and other methods) ver 4.10 (Sunderland, USA: Sinauer Associates)
- Taanman, J.W. (1999). The mitochondrial genome: structure, transcription, translation and replication. Biochim. Biophys. Acta 1410, 103-123 https://doi.org/10.1016/S0005-2728(98)00161-3
- Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 https://doi.org/10.1093/nar/22.22.4673
- Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997). The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 173-216
- Wolstenholme, D.R. (1992). Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141, 173-216 https://doi.org/10.1016/S0074-7696(08)62066-5
- Yukuhiro, K., Sezutsu, H., Itoh, M., Shimizu, K., and Banno, Y. (2002). Significant levels of sequence divergence and gene rearrangements have occurred between the mitochondrial genomes of the wild mulberry silk moth, Bombyx mandarina, and its close relative, the domesticated silk moth, Bombyx mori Mol. Biol. Evol. 19, 1385-1389 https://doi.org/10.1093/oxfordjournals.molbev.a004200
- Zhang, D., Szymura, J.M., and Hewitt, G.M. (1995). Evolution and structural conservation of the control region of insect mitochondrial DNA. J. Mol. Evol. 40, 382-391 https://doi.org/10.1007/BF00164024
- Zhang, D.X., and Hewitt, G.M. (1997). Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies. Biochem. Syst. Evol. 25, 99-120 https://doi.org/10.1016/S0305-1978(96)00042-7
Cited by
- Complete mitochondrial genome of brown marmorated stink bug Halyomorpha halys (Hemiptera: Pentatomidae), and phylogenetic relationships of hemipteran suborders vol.28, pp.3, 2009, https://doi.org/10.1007/s10059-009-0125-9
- Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics vol.38, pp.21, 2009, https://doi.org/10.1093/nar/gkq807
- Conserved PCR Primer Set Designing for Closely-Related Species to Complete Mitochondrial Genome Sequencing Using a Sliding Window-Based PSO Algorithm vol.6, pp.3, 2009, https://doi.org/10.1371/journal.pone.0017729
- The mitochondrial genome of the ascalaphid owlfly Libelloides macaronius and comparative evolutionary mitochondriomics of neuropterid insects vol.12, pp.None, 2011, https://doi.org/10.1186/1471-2164-12-221
- Complete sequence and gene organization of the mitochondrial genome of Batocera lineolata Chevrolat (Coleoptera: Cerambycidae) vol.57, pp.27, 2009, https://doi.org/10.1007/s11434-012-5271-3
- The first mitochondrial genome for the wasp superfamily Platygastroidea: the egg parasitoidTrissolcus basalis vol.55, pp.3, 2009, https://doi.org/10.1139/g2012-005
- Complete mitochondrial genome of the seven-spotted lady beetle, Coccinella septempunctata (Coleoptera: Coccinellidae) vol.23, pp.3, 2009, https://doi.org/10.3109/19401736.2012.668901
- Characterization of the Mitochondrial Genome of the Diamondback MothPlutella xylostella(Lepidoptera: Plutellidae) and Phylogenetic Analysis of Advanced Moths and Butterflies vol.32, pp.4, 2009, https://doi.org/10.1089/dna.2012.1942
- Complete coding region of the mitochondrial genome of Monochamus alternatus hope (Coleoptera: Cerambycidae). vol.30, pp.7, 2009, https://doi.org/10.2108/zsj.30.570
- Description of Nearly Completed Mitochondrial Genome Sequences of the Garden Chafer Polyphylla laticollis manchurica, Endangered in Korea (Insecta: Coleoptera) vol.27, pp.1, 2013, https://doi.org/10.7852/ijie.2013.27.1.185
- First record of Rhoptrocentruspiceus Marshall ( Hymenoptera , Braconidae , Doryctinae ) as parasitoid of Psacotheahilarishilaris (Pascoe) ( Coleoptera , Cerambycidae ) vol.482, pp.None, 2009, https://doi.org/10.3897/zookeys.482.8946
- Complete mitochondrial genome of the two-spotted stag beetle, Metopodontus blanchardi (Coleoptera: Lucanidae) vol.26, pp.2, 2009, https://doi.org/10.3109/19401736.2013.825788
- Complete mitochondrial genome of the Burmese giant earthworm, Tonoscolex birmanicus (Clitellata: Megascolecidae) vol.26, pp.3, 2009, https://doi.org/10.3109/19401736.2013.830300
- The beetle tree of life reveals that Coleoptera survived end‐Permian mass extinction to diversify during the Cretaceous terrestrial revolution vol.40, pp.4, 2009, https://doi.org/10.1111/syen.12132
- The complete mitochondrial genome of the longhorn beetle,Massicus raddei vol.27, pp.1, 2016, https://doi.org/10.3109/19401736.2014.880892
- Complete mitochondrial genome of the Japanese pine sawyer,Monochamus alternatus(Coleoptera: Cerambycidae) vol.27, pp.2, 2009, https://doi.org/10.3109/19401736.2014.936321
- The mitochondrial genome of the multicolored Asian lady beetle Harmonia axyridis (Pallas) and a phylogenetic analysis of the Polyphaga (Insecta: Coleoptera) vol.27, pp.4, 2009, https://doi.org/10.3109/19401736.2015.1046165
- Complete mitochondrial genome of Cryptolestes pusillus (Coleoptera: Laemophloeidae) vol.27, pp.5, 2009, https://doi.org/10.3109/19401736.2015.1079865
- Complete mitochondrial genome of Callipogon relictus Semenov (Coleoptera: Cerambycidae): a natural monument and endangered species in Korea vol.2, pp.2, 2009, https://doi.org/10.1080/23802359.2017.1372718
- The complete mitochondrial genome sequence from the longicorn beetle Obrium sp. (Coleoptera: Cerambycidae) vol.28, pp.3, 2009, https://doi.org/10.3109/19401736.2015.1122766
- Revisiting Coleoptera a + T-rich region: structural conservation, phylogenetic and phylogeographic approaches in mitochondrial control region of bioluminescent Elateridae species (Coleoptera) vol.28, pp.5, 2009, https://doi.org/10.3109/24701394.2016.1174220
- The mitochondrial genomes of two walnut pests, Gastrolina depressa depressa and G . depressa thoracica (Coleoptera: Chrysomelidae), and phylogenetic analyses vol.6, pp.None, 2009, https://doi.org/10.7717/peerj.4919
- The Complete Mitochondrial Genome of the Longhorn Beetle Dorysthenes paradoxus (Coleoptera: Cerambycidae: Prionini) and the Implication for the Phylogenetic Relationships of the Cerambycidae Species vol.18, pp.2, 2009, https://doi.org/10.1093/jisesa/iey012
- The complete mitochondrial genomes of five longicorn beetles (Coleoptera: Cerambycidae) and phylogenetic relationships within Cerambycidae vol.7, pp.None, 2009, https://doi.org/10.7717/peerj.7633
- The complete mitochondrial genome of Xystrocera globosa (Coleoptera: Cerambycidae) and its phylogeny vol.4, pp.1, 2009, https://doi.org/10.1080/23802359.2019.1605852
- Mitochondrial genomes of twelve species of hyperdiverse Trigonopterus weevils vol.8, pp.None, 2009, https://doi.org/10.7717/peerj.10017
- The complete mitochondrial genome of Annamanum lunulatum (Coleoptera: Lamiinae) and its phylogeny vol.5, pp.1, 2009, https://doi.org/10.1080/23802359.2019.1710284
- Comparative mitochondrial genome analysis of Dendrolimus houi (Lepidoptera: Lasiocampidae) and phylogenetic relationship among Lasiocampidae species vol.15, pp.5, 2009, https://doi.org/10.1371/journal.pone.0232527
- Mitogenome Analysis of Four Lamiinae Species (Coleoptera: Cerambycidae) and Gene Expression Responses by Monochamus alternatus When Infected with the Parasitic Nematode, Bursaphelenchus mucronatus vol.12, pp.5, 2009, https://doi.org/10.3390/insects12050453
- Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878) vol.6, pp.11, 2021, https://doi.org/10.1080/23802359.2021.1989334