DOI QR코드

DOI QR Code

Identification and Characterization of Alternative Promoters of the Rice MAP Kinase Gene OsBWMK1

  • Koo, Sung Cheol (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Choi, Man Soo (National Institute of Crop Science, Rural Development Administration) ;
  • Chun, Hyun Jin (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Park, Hyeong Cheol (Plant Molecular Biology and Biotechnology Research Center and Environmental Biotechnology National Core Research Center, Gyeongsang National University) ;
  • Kang, Chang Ho (Plant Molecular Biology and Biotechnology Research Center and Environmental Biotechnology National Core Research Center, Gyeongsang National University) ;
  • Shim, Sang In (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Chung, Jong Il (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Cheong, Yong Hwa (Department of Bio-Environmental Science, Sunchon National University) ;
  • Lee, Sang Yeol (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Yun, Dae-Jin (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Chung, Woo Sik (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Cho, Moo Je (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University) ;
  • Kim, Min Chul (Division of Applied Life Science (Brain Korea 21 program), Graduate School of Gyeongsang National University)
  • Received : 2009.01.19
  • Accepted : 2009.02.26
  • Published : 2009.04.30

Abstract

Our previous study suggested that OsBWMK1, a gene which encodes a member of the rice MAP kinase family, generates transcript variants which show distinct expression patterns in response to environmental stresses. The transcript variants are generated by alternative splicing and by use of alternative promoters. To test whether the two alternative promoters, pOsBWMK1L (promoter for the OsBWMK1L splice variant) and pOsBWMK1S (promoter for the OsBWMK1S splice variant), are biologically functional, we analyzed transgenic plants expressing GUS fusion constructs for each promoter. Both pOsBWMK1L and pOsBWMK1S are biologically active, although the activity of pOsBWMK1S is lower than that of pOsBWMK1L. Histochemical analysis revealed that pOsBWMK1L is constitutively active in most tissues at various developmental stages in rice and Arabidopsis, whereas pOsBWMK1S activity is spatially and temporally restricted. Furthermore, the expression of pOsBWMK1S::GUS was upregulated in response to hydrogen peroxide, a plant defense signaling molecule, in both plant species. These results suggest that the differential expression of OsBWMK1 splice variants is the result of alternative promoter usage and, moreover, that the mechanisms controlling OsBWMK1 gene expression are conserved in both monocot and dicot plants.

Keywords

Acknowledgement

Supported by : Ministry of Education, Science and Technology of Korea, Korea Science and Engineering Foundation, Rural Development Administration

References

  1. Agrawal, G.K., Jwa, N.S., and Rakwal, R. (2000). A novel rice (Oryza sativa L.) acidic moN gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors. Biochem. Biophys. Res. Commun. 274, 157-165 https://doi.org/10.1006/bbrc.2000.3114
  2. Agrawal, G.K., Agrawal, S.K., Shibato, J., Iwahashi, H., and Rakwal, R. (2003). Novel rice MAP kinases OsMSRMK3 and OsWJIMK1 involved in encountering diverse environmental stresses and developmental regulation. Biochem. Biophys. Res. Commun. 300, 775-783 https://doi.org/10.1016/S0006-291X(02)02868-1
  3. Asai, T., Tena, G., Plotnikova, J., Willmann, M.R., Chiu, W.L., Gomez-Gomez, L., Boller, T., Ausubel, F.M., and Sheen, J. (2002) MAP kinase signalling cascade in Arabidopsis innate immunity. Nature 415, 977-983 https://doi.org/10.1038/415977a
  4. Bai, X., Peirson, B.N., Dong, F., Xue, C., and Makaroff, C.A. (1999). Isolation and characterization of SYN1, a RAD21-like gene essential for meiosis in Arabidopsis. Plant Cell 11, 417-430 https://doi.org/10.1105/tpc.11.3.417
  5. Bonham, K., Ritchie, S.A., Dehm, S.M., Snyder, K., and Boyd, F.M. (2000). An alternative, human SRC promoter and its regulation by hepatic nuclear factor-1alpha. J. Biol. Chem. 275, 37604-37611 https://doi.org/10.1074/jbc.M004882200
  6. Cheong, Y.H., Moon, B.C., Kim, J.K., Kim, C.Y., Kim, M.C., Kim, I.H., Park, C.Y., Kim, J.C., Park, B.O., Koo, S.C., et al. (2003). BWMK1, a rice mitogen-activated protein kinase, locates in the nucleus and mediates pathogenesis-related gene expression by activation of a transcription factor. Plant Physiol. 132, 1961-1972 https://doi.org/10.1104/pp.103.023176
  7. Chen, W.H., Lv, G., Lv, C., Zeng, C., and Hu, S. (2007). Systematic analysis of alternative first exons in plant genomes. BMC Plant Biol. 7, 1-13 https://doi.org/10.1186/1471-2229-7-1
  8. Clough, S.J., and Bent, A.F. (1998). Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743 https://doi.org/10.1046/j.1365-313x.1998.00343.x
  9. Eulgem, T., and Somssich, I.E. (2007). Networks of WRKY transcription factors in defense signaling. Curr. Opin. Plant Biol. 10, 366-371 https://doi.org/10.1016/j.pbi.2007.04.020
  10. Eulgem, T., Rushton, P.J., Schmelzer, E., Hahlbrock, K., and Somssich, I.E. (1999). Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors. EMBO J. 18, 4689-4699 https://doi.org/10.1093/emboj/18.17.4689
  11. Fu, S.F., Chou, W.C., Huang, D.D., and Huang, H.J. (2002). Transcriptional regulation of a rice mitogen-activated protein kinase gene, OsMAPK4, in response to environmental stresses. Plant Cell Physiol. 43, 958-963 https://doi.org/10.1093/pcp/pcf111
  12. Huang, H.J., Fu, S.F., Tai, Y.H., Chou, W.C., and Huang, D.D. (2002). Expression of Oryza sativa MAP kinase gene is developmentally regulated and stress-responsive. Physiol. Plant 114, 572-580 https://doi.org/10.1034/j.1399-3054.2002.1140410.x
  13. Iwamoto, M., Higo, H., and Higo, K. (2004). Strong expression of the rice catalase gene CatB promoter in protoplasts and roots of both monocots and dicots. Plant Physiol. Biochem. 42, 241-249 https://doi.org/10.1016/j.plaphy.2004.01.008
  14. Jefferson, R.A., Kavanagh, T.A., and Bevan, M.W. (1987). GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6, 3901-3907
  15. Jeon, J.S., Lee, S., and An, G. (2008). Intragenic Control of Expression of a Rice MADS Box Gene OsMADS1. Mol. Cells 26, 474-480
  16. Johnson, C.S., Kolevski, B., and Smyth, D.R. (2002). TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 14, 1359-1375 https://doi.org/10.1105/tpc.001404
  17. Kazan, K. (2003). Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged. Trends Plant Sci. 8, 468-471 https://doi.org/10.1016/j.tplants.2003.09.001
  18. Kimura, K., Wakamatsu, A., Suzuki, Y., Ota, T., Nishikawa, T., Yamashita, R., Yamamoto, J., Sekine, M., Tsuritani, K., Wakaguri, H., et al. (2006). Diversification of transcriptional modulation: largescale identification and characterization of putative alternative promoters of human genes. Genome Res. 16, 55-65 https://doi.org/10.1101/gr.4039406
  19. Kitagawa, N., Washio, T., Kosugi, S., Yamashita, T., Higashi, K., Yanagawa, H., Higo, K., Satoh, K., Ohtomo, Y., Sunako, T., et al. (2005). Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa). Bioinformatics 21, 1758-1763 https://doi.org/10.1093/bioinformatics/bti253
  20. Koo, S.C., Yoon, H.W., Kim, C.Y., Moon, B.C., Cheong, Y.H., Han, H.J., Lee, S.M., Kang, K.Y., Kim, M.C., Lee, S.Y., et al. (2007). Alternative splicing of the OsBWMK1 gene generates three transcript variants showing differential subcellular localizations. Biochem. Biophys. Res. Commun. 360, 188-193 https://doi.org/10.1016/j.bbrc.2007.06.052
  21. Kornblihtt, A.R. (2005). Promoter usage and alternative splicing. Curr. Opin. Cell Biol. 17, 262-268 https://doi.org/10.1016/j.ceb.2005.04.014
  22. Lareau, L.F., Green, R.E., Bhatnagar, R.S., and Brenner, S.E. (2004). The evolving roles of alternative splicing. Curr. Opin. Struct. Biol. 14, 273-282 https://doi.org/10.1016/j.sbi.2004.05.002
  23. Lee, S., Jeon, J.S., Jung, K.H., and An, G. (1999). Binary vectors for efficient transformation of rice. J. Plant Biol. 42, 310-316 https://doi.org/10.1007/BF03030346
  24. Lescot, M., Dehais, P., Thijs, G., Marchal, K., Moreau, Y., Van de Peer, Y., Rouze, P., and Rombauts, S. (2002). PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for silico analysis of promoter sequences. Nucleic Acids Res. PM, 325-327. https://doi.org/10.1093/nar/30.1.325
  25. Lewis, W.J., van Lenteren, J.C., Phatak, S.C., and Tumlinson, J.H. 3rd. (1997). A total system approach to sustainable pest management. Proc. Natl. Acad. Sci. USA 94, 12243-12248 https://doi.org/10.1073/pnas.94.23.12243
  26. Li, L., Zhao, Y., McCaig, B.C., Wingerd, B.A., Wang, J., Whalon, M.E., Pichersky, E., and Howe, G.A. (2004). The tomato homolog of CORONATINE-INSENSITIVE1 is required for the maternal control of seed maturation, jasmonate-signaled defense responses, and glandular trichome development. Plant Cell 16, 126-143 https://doi.org/10.1105/tpc.017954
  27. Liang, H., and Landweber, L.F. (2006). A genome-wide study of dual coding regions in human alternatively spliced genes. Genome Res. 16, 190-196 https://doi.org/10.1101/gr.4246506
  28. Liu, Z.Z., Wang, J.L., Huang, X., Xu, W.H., Liu, Z.M., and Fang, R.X. (2003). The promoter of a rice glycine-rich protein gene, Osgrp2, confers vascular-specific expression in transgenic plants. Planta 216, 824-833
  29. Liu, X., Bai, X., Wang, X., and Chu, C. (2007). OsWRKY71, a rice transcription factor, is involved in rice defense response. J. Plant Physiol. 164, 969-979 https://doi.org/10.1016/j.jplph.2006.07.006
  30. Morello, L., Bardini, M., Sala, F., and Breviario, D. (2002). A long leader intron of the Ostub16 rice beta-tubulin gene is required for high-level gene expression and can autonomously promote transcription both in vivo and in vivo. Plant J. 29, 33-44 https://doi.org/10.1046/j.0960-7412.2001.01192.x
  31. Parsley, K., and Hibberd, J.M. (2006). The Arabidopsis PPDK gene is transcribed from two promoters to produce differentially expressed transcripts responsible for cytosolic and plastidic proteins. Plant Mol. Biol. 62, 339-349 https://doi.org/10.1007/s11103-006-9023-0
  32. Qi, X.T., Zhang, Y.X., and Chai, T.Y. (2007). The bean PvSR2 gene produces two transcripts by alternative promoter usage. Biochem. Biophys. Res. Commun. 356, 273-278 https://doi.org/10.1016/j.bbrc.2007.02.124
  33. Song, F., and Goodman, R.M. (2002). OsBIMK1, a rice MAP kinase gene involved in disease resistance responses. Planta 215, 997-1005 https://doi.org/10.1007/s00425-002-0794-5
  34. Tittarelli, A., Milla, L., Vargas, F., Morales, A., Neupert, C., Meisel, L.A., Salvo-G, H., Penaloza, E., Munoz, G., Corcuera, L.J., et al. (2007). Isolation and comparative analysis of the wheat TaPT2 promoter: identification in silico of new putative regulatory motifs conserved between monocots and dicots. J. Exp. Bot. 58, 2573-2582 https://doi.org/10.1093/jxb/erm123
  35. Viegas, L.R., Vicent, G.P., Baranao, J.L., Beato, M., and Pecci, A. (2004). Steroid hormones induce bcl-X gene expression through direct activation of distal promoter P4. J. Biol. Chem. 279, 9831-9839 https://doi.org/10.1074/jbc.M312402200
  36. Wagner, G.J., Wang, E., and Shepherd, R.W. (2004). New approaches for studying and exploiting an old protuberance, the plant trichome. Ann. Bot. 93, 3-11 https://doi.org/10.1093/aob/mch011
  37. Wang, X., Su, H., and Bradley, A. (2002). Molecular mechanisms governing Pcdh-gamma gene expression: evidence for a multiple promoter and cis-alternative splicing model. Genes Dev. 16, 1890-1905 https://doi.org/10.1101/gad.1004802
  38. Yan, Y., Phan, L., Yang, F., Talpaz, M., Yang, Y., Xiong, Z., Ng, B., Timchenko, N.A., Wu, C.J., Ritz, J., et al. (2004). A novel mechanism of alternative promoter and splicing regulates the epitope generation of tumor antigen CML66-L. J. Immunol. 172, 651-660 https://doi.org/10.4049/jimmunol.172.1.651

Cited by

  1. A protocol to remove colored metabolites and other inhibitors from plant tissues to facilitate RNA isolation suitable for downstream applications vol.28, pp.5, 2012, https://doi.org/10.1002/btpr.1577
  2. Expression Analysis of Segmentally Duplicated ZmMPK3-1 and ZmMPK3-2 genes in Maize vol.31, pp.2, 2009, https://doi.org/10.1007/s11105-012-0489-4
  3. Stress-Induced Changes in Alternative Splicing Landscape in Rice: Functional Significance of Splice Isoforms in Stress Tolerance vol.10, pp.4, 2021, https://doi.org/10.3390/biology10040309