DOI QR코드

DOI QR Code

Determination of Genetic Divergence Based on DNA Markers Amongst Monosporidial Strains Derived from Fungal Isolates of Karnal Bunt of Wheat

  • Seneviratne, J.M. (Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and Technology) ;
  • Gupta, Atul K. (Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and Technology) ;
  • Pandey, Dinesh (Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and Technology) ;
  • Sharma, Indu (Department of Genetics and Plant Breeding, Punjab Agricultural University) ;
  • Kumar, Anil (Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and Technology)
  • Published : 2009.12.01

Abstract

Genetic variation among the base isolates and monosporidial strains derived from these isolates of Tilletia indica- the causal agent of Karnal bunt (KB) in wheat, was analyzed by morphological, growth behaviors and RAPD-ISSR based molecular polymorphism. Genetic make up of fungal cultures vary among each other. The magnitude of variation in KBPN group is less (narrow genetic base) when compared to the other groups KB3, KB9 and JK (broad genetic base) reflecting that variability is a genetically governed process. The generation of new variation with different growth characteristics is not a generalized feature and is totally dependant on the original genetic make-up of the base isolate generating new monosporidial strains. Thus, it can be concluded that monosporidial strains derived from mono-teliosporic isolate, consists of genetically heterogeneous population. The morphological and genetic variability further suggests that the variation in T. indica strains is predominantly derived through the genetic rearrangements through para sexual means.

Keywords

References

  1. Aujla, S. S. and Sharma, I. 1990. Compatibility systems in N. indica. Indian Phytopathol. 43:222-223
  2. Borja, I., Solheim, H., Hietala, A M. and Fosdal, C. G. 2006. Etiology and realtime polymerase chain reaction-based detection of Gremmeniella- and Phomopsis-associated disease in Norway spruce seedling. Phytopathology 96:1305-1314 https://doi.org/10.1094/PHYTO-96-1305
  3. Chadha, S. and Gopalakrishna, T. 2005. Genetic diversity of Indian isolates of rice blast pathogen (Magnaporthe grisea) using molecular markers. Curr. Science 88:1466-1469
  4. Cohen, S., Allasia, v., Venard, P., Notter, S., Verniere, C. H. and Panabieres, F. 2003. Intraspecific variation in Phytophthora citrophthora from citrus trees in eastern Corsica. Eur. J. Plant Pathol. 109:791-805 https://doi.org/10.1023/A:1026190318631
  5. Duran, R. and Cromarty, R. 1977. Tilletia indica: A heterothallic wheat bunt fungus with multiple alleles controlling incompatibility. Phytopathology 67:812-815
  6. Elbakali, A. M., Lilja, A, Hantula, J. and Martin, M. 2003. Identification of Spanish isolates of Rhizoctonia solani from potato by anastomosis grouping, ITS-RFLP and RAMS-fingerprinting. Phytopathologia Mediterranea 42:167-176
  7. Geeta Rai, Anil Kumar, Singh, A. and Garg, G. K. 2000. Modulation of antigenicity of mycelial antigens during developmental cycle of Kamal Bunt (T. indica) of wheat. Indian J. Exp. BioI. 38:488-492
  8. Gill, K. S., Sharma, Indu and Aujla, S. S. 1993. Kamal bunt and wheat production. Punjab Agricultural University Ludhiana, 153 pp
  9. Hantula, J., Dusabenyagasani, M. and Hamelin, R. C. 1996. Random amplified microsatellites (RAMS) da novel method for characterizing genetic variation within fungi. Eur. J. Forest Pathol. 26:159-166 https://doi.org/10.1111/j.1439-0329.1996.tb00720.x
  10. Hantula, J., Lilja, A. and Parikka, P. 1997. Genetic variation and host specificity of Phytophthora cactorum isolated in Europe. Mycol. Res. 101:565-572 https://doi.org/10.1017/S0953756296002900
  11. Hernandez, J. F., Posado, M. A., del Portillo, P. and Arbelaez, G. 1999. Identification of molecular markers of Fusarium oxysporum f.sp. dianthi by RAPD. Acta Horti No 482:123-131
  12. Jain, D. 2004. PCR amplification and sequencing of wheat cystatin gene families for understanding their role in Kamal bunt resistance. M.Sc. thesis 2004, G.B. Pant University, Pantnagar, India
  13. Majer, D., Mithen, R., Lewis, B. G, Vos, P. and Oliver, R. P. 1996. The use of AFLP fmgerprinting for detection of genetic variation in fungi. Mycol. Res. 100:31-48 https://doi.org/10.1016/S0953-7562(96)80097-9
  14. Milbourne, D., Meyer, R., Bradshow, J. E., Baired, E., Bonar, N., Provan, J., Powell, W. and Waugh, R. 1997. Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato. Mol. Breeding 3:127-136 https://doi.org/10.1023/A:1009633005390
  15. Mishra, P., Fox, R. T. and Culham, A. 2003. Inter-simple sequence repeat and aggressiveness analysis revealed high genetic diversity, recombination and long-range dispersal in Fusarium culmorum. Annals Applied Biology 143:291-301 https://doi.org/10.1111/j.1744-7348.2003.tb00297.x
  16. Mishra, A., Anil Kumar, Garg, G. K. and Sharma, I. 2001. Determination of Genetic Variability among Isolates of T. indica using Random Amplified Polymorphic DNA analysis. Plant cell Biotech. Mol. BioI. 1:29-36
  17. Mahuku, G. S., Henriquez, M. A., Munoz, J. and Buruchara, R. 2002. Molecular markers dispute the existence of the Afro-Andean group of the bean angular leaf spot pathogens. Phaeoisariopsis griseola. Phytopathology 92:580-589 https://doi.org/10.1094/PHYTO.2002.92.6.580
  18. Mahuku, G. S. and Riascos, J. J. 2004. Virulence and molecular diversity within Colletotrichum lindemuthianum isolates from Andean and Mesoamerican bean varieties and regions. Eur. J. Plant Phytol. 110:253-263 https://doi.org/10.1023/B:EJPP.0000019795.18984.74
  19. Murray, M. G. and Thompson, W. F. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acid Res. 8:4321-4325 https://doi.org/10.1093/nar/8.19.4321
  20. Narayanasamy, P. 200l. Plant pathogen detection and disease diagnosis. Second edition marcel Dekker Inc, New York
  21. Nei, M. and Li, W. H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Nat. Acad Sci. USA 76: 5269-5273 https://doi.org/10.1073/pnas.76.10.5269
  22. Nicholas, J. T. 1998. Molecular variability among fungal pathogens: Using the rice blast fungus as a case study. Molecular Variability of Fungal Pathogens (p. Bridge, Y. Couteaudier and J. Clarkson), 1-14 pp
  23. Powel, W., Morgante, M. Andre, C., Hanafey, M., Vogel, J., Tingery, S. and Rafalski, A. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breeding 2:225-238 https://doi.org/10.1007/BF00564200
  24. Royer, M. H. and Rytter, J. 1985. Artificial inoculation of wheat with Tilletia indica from Mexico and India. Plant Dis. 69:317-319
  25. Sambrook, J., Fritch, E. F. and Maniatis, T. 1989. Molecular Cloning a laboratory manual 2nd ed. N.Y. cold spring Harbor Laboratory, cold spring Harbor Laboratory Press, 1659 p
  26. Schilling, A. G, Moller, E. M. and Geiger, H. H. 1994. RAPDs of Fusarium culmorum and F graminearum: application of genotyping and species identification. In: Modern assays for plant pathogenic fo,ngi: identification detection and quantification. ed. by A. Schots, F. H. Derwey and R Oliver, pp 47-56. CAB International, Walling ford, UK
  27. Schull, V. and Hamer, J. E. 1994. Genomic structure and variability in Pyricularia grisea. In: Rice blast disease ed. by R Zeigler, S. A. Leong, and P. S. Teng, pp. 65-86. CAB International, Wallingford, UK
  28. Semagn, K., Bjornstad, A., Skinnes, H., Maroy, A. G, Tarkegne, T. and William, M. 2006b. Distribution of DART, AFLP, and SSR markers in a genetic linkage map of a doubled haploid hexaploid wheat population. Genome 49:545-555 https://doi.org/10.1139/G06-002
  29. Tooley, P. W, O'Neill, N. R., Goley, E. D. and Carras, M. M. 2000. Assessment of diversity in Claviceps africana and other Claviceps by RAM and AFLP analysis Phytopathology 90:1126-1130 https://doi.org/10.1094/PHYTO.2000.90.10.1126
  30. Zanotti, M. G. S., deQueiroz, M. V., dos Santos, J. K., Rocha, R. B., deBarros, E. G. and Arujo, E. F. 2006. Analysis of genetic diversity of Fusarium oxysporum f.sp. phaseoli isolates pathogenic and nonpathogenic to common bean (Phaseolus vulgaris L). J. Phytopathol. 154:549-559 https://doi.org/10.1111/j.1439-0434.2006.01145
  31. Zhou, S., Smith, D. Rand Stanosz, G. R. 2001. Differentiation of Botryosphaeria species and related anamorphic fungi using inter simple or short sequence repeat (ISSR) ingerprinting. Mycol. Res. 105:919-926 https://doi.org/10.1016/S0953-7562(08)61947-4
  32. Zietkiewicz, E., Rafalski, A. and Labuda, D. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183 https://doi.org/10.1006/geno.1994.1151

Cited by

  1. Foliar application of the leaf-colonizing yeast Pseudozyma churashimaensis elicits systemic defense of pepper against bacterial and viral pathogens vol.7, 2017, https://doi.org/10.1038/srep39432
  2. Determination of variability in monosporidial lines ofTilletia indicaby RAPD analysis vol.44, pp.13, 2011, https://doi.org/10.1080/03235408.2010.496560
  3. Benzothiadiazole-elicited defense priming and systemic acquired resistance against bacterial and viral pathogens of pepper under field conditions vol.6, pp.4, 2012, https://doi.org/10.1007/s11816-012-0234-3
  4. Cloning, in silico characterization and induction of TiKpp2 MAP kinase in Tilletia indica under the influence of host factor(s) from wheat spikes vol.40, pp.8, 2013, https://doi.org/10.1007/s11033-013-2597-0
  5. Alteration of Genetic Make-up in Karnal Bunt Pathogen (Tilletia indica) of Wheat in Presence of Host Determinants vol.31, pp.2, 2015, https://doi.org/10.5423/PPJ.OA.10.2014.0106
  6. Overexpression of Zm-HINT1 in Arabidopsis thaliana enhances resistance to Fusarium graminearum vol.121, pp.2, 2015, https://doi.org/10.1007/s11240-015-0709-3
  7. of wheat from related fungal species vol.166, pp.10, 2018, https://doi.org/10.1111/jph.12756
  8. Complementary Proteomics, Genomics approaches identifies potential pathogenicity/virulence factors in Tilletia indica induced under the influence of host factor vol.9, pp.1, 2019, https://doi.org/10.1038/s41598-018-37810-1