Genomics & Informatics

  • 제6권2호
  • /
  • Pages.95-97
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  • 2008
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  • 1598-866X(pISSN)
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  • 2234-0742(eISSN)
한국유전체학회 (Korea Genome Organization)
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A Bio-database Management System for the Monitoring and Automatic FTP of Public Databases

  • Tae, Hong-Seok (Information Technology Institute, SmallSoft Co. Ltd.) ;
  • Han, Jeong-Min (Korean Medicine Information Division, Korea Institute of Oriental Medicine) ;
  • Ahn, Bu-Young (Contents Convergence Team, Korea Institute of Science and Technology Information) ;
  • Park, Kie-Jung (Information Technology Institute, SmallSoft Co. Ltd.)
  • 발행 : 2008.06.30
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초록

Many bioinformatics sites have managed local bio-databases, including major databases such as GenBank and PIR with update load. We have developed several programs to monitor the update status of these databases and to FTP them automatically. These programs can be used for maintaining local bio-databases as recent versions and providing up-to-date databases through FTP sites. Currently, the program serves major bio-databases and will extend to accommodate many more bio-databases.

키워드

참고문헌

  1. Benson, D.A., Boguski, M., Lipman, D.J., and Ostell, J. (1994). GenBank. Nucleic Acid Res. 22, 3441-3444. https://doi.org/10.1093/nar/22.17.3441
  2. McGarvey, P.B., Huang, H., Barker, W.C., Orcutt, B.C., Garavelli, J.S, Srinivasarao, G.Y., Yeh, L.L., Xiao, C., and Wu, C.H. (2000). PIR: a new resource for bioinformatics. Bioinformatics 16, 290-291. https://doi.org/10.1093/bioinformatics/16.3.290
  3. Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N., and Bourne, P.E. (2000). The protein data bank. Nucleic Acids Res. 28, 235-242. https://doi.org/10.1093/nar/28.1.235

피인용 문헌

  1. An Integrated Database and Web Service for Microbial Resources at KACC vol.7, pp.1, 2009, https://doi.org/10.5808/GI.2009.7.1.041