Purification and Characterization of NAD-Dependent n-Butanol Dehydrogenase from Solvent-Tolerant n-Butanol-Degrading Enterobacter sp. VKGH12

  • Veeranagouda, Y. (Department of Biochemistry, Gulbarga University) ;
  • Benndorf, Dirk (Department of Bioremediation, UFZ - Helmholtz Centre for Environmental Research Leipzig-Halle) ;
  • Heipieper, Hermann J. (Department of Bioremediation, UFZ - Helmholtz Centre for Environmental Research Leipzig-Halle) ;
  • Karegoudar, T.B. (Department of Biochemistry, Gulbarga University)
  • Published : 2008.04.30

Abstract

The solvent-tolerant bacterium Enterobacter sp. VKGH12 is capable of utilizing n-butanol and contains an $NAD^+$-dependent n-butanol dehydrogenase (BDH). The BDH from n-butanol-grown Enterobacter sp. was purified from a cell-free extract (soluble fraction) to near homogeneity using a 3-step procedure. The BDH was purified 15.37-fold with a recovery of only 10.51, and the molecular mass estimated to be 38 kDa. The apparent Michaelis-Menten constant ($K_m$) for the BDH was found to be 4 mM with respect to n-butanol. The BDH also had a broad range of substrate specificity, including primary alcohols, secondary alcohols, and aromatic alcohols, and exhibited an optimal activity at pH 9.0 and $40^{\circ}C$. Among the metal ions studied, $Mg^{2+}$ and $Mn^{2+}$ had no effect, whereas $Cu^{2+},\;Zn^{2+}$, and $Fe^{2+}$ at 1 mM completely inhibited the BDH activity. The BDH activity was not inhibited by PMSF, suggesting that serine is not involved in the catalytic site. The known metal ion chelator EDTA had no effect on the BDH activity. Thus, in addition to its physiological significance, some features of the enzyme, such as its activity at an alkaline pH and broad range of substrate specificity, including primary and secondary alcohols, are attractive for application to the enzymatic conversion of alcohols.

Keywords

References

  1. Alisa, V. S. and J. D Arp. 2001. An inducible 1-butanol dehydrogenase, a quinohaemoprotein, is involved in the oxidation of butane by Pseudomonas butanovora. Microbiology 147: 745- 756 https://doi.org/10.1099/00221287-147-3-745
  2. Alisa, V. S., J. D. Arp, and L. A. Sayavedra-Soto. 2002. Two distinct alcohol dehydrogenases participate in butane metabolism by Pseudomonas butanovora. J. Bacteriol. 184: 1916-1924 https://doi.org/10.1128/JB.184.7.1916-1924.2002
  3. Anthony, C. 1993. Methanol dehydrogenase in Gram-negative bacteria, pp. 17-45. In V. L. Davidson (ed.), Principles and Applications of Quinoproteins. Marcel Dekker, Inc., New York, N.Y.
  4. Anthony, C. 1998. The pyrroloquinoline quinone (PQQ)-containing quinoprotein dehydrogenases. Biochem. Soc. Trans. 26: 413- 417 https://doi.org/10.1042/bst0260413
  5. Ashraf, W. and J. C. Murrell. 1990. Purification and characterization of a $NAD^+$-dependent secondary alcohol dehydrogenase from propane-grown Rhodococcus rhodochrous PNKb1. Arch. Microbiol. 153: 163-168 https://doi.org/10.1007/BF00247815
  6. Ashraf, W. and J. C. Murrell. 1992. Genetic, biochemical and immunological evidence for the involvement of two alcohol dehydrogenases in the metabolism of propane by Rhodococcus rhodochrous PNKb1. Arch. Microbiol. 157: 488-492
  7. Beardmore-Gray, M. and C. Anthony. 1986. The oxidation of glucose by Acinetobacter calcoaceticus: Interaction of the quinoprotein glucose dehydrogenase with the electron transport chain. J. Gen. Microbiol. 132: 1257-1268
  8. Beers, P. J. 1988. The diversity of alcohol dehydrogenases in Pseudomonas butanovora and their role in alkane metabolism. MSc thesis, University of Warwick
  9. Coleman, J. P. and J. J. Perry. 1985. Purification and characterization of the secondary alcohol dehydrogenase from propane-utilizing Mycobacterium vaccae strain JOB5. J. Gen. Microbiol. 131: 2901-2907
  10. EPA. 1994. Chemicals in the Environment: 1-Butanol. Environmental Protection Agency, Office of Pollution Prevention and Toxics, Washington DC
  11. Grit, Z., T. Schraderr, and J. R. Andreesen. 1997. Degradation of tetrahydrofurfuryl alcohol by Ralstonia eutropha is initiated by an inducible pyrroloquinoline quinone-dependent alcohol dehydrogenase. Appl. Microbiol. Biotechnol. 63: 4891-4898
  12. Jendrossek, D., N. Kruger, and A. Steinbuchel. 1990. Characterization of alcohol dehydrogenase genes of derepressible wild-type Alcaligenes eutrophus H16 and constitutive mutants. J. Bacteriol. 172: 4844-4851 https://doi.org/10.1128/jb.172.9.4844-4851.1990
  13. Lowry, O. H., M. J. Rosebrough, A. Farr, and R. J. Randall. 1951. Protein measurement with folin phenol reagent. J. Biol. Chem. 193: 265-275
  14. Madyastha, K. M. and T. L. Gururaja. 1995. Purification and some properties of a novel secondary alcohol dehydrogenase from Alcaligenes eutrophus. Biochem. Biophys. Res. Commun. 211: 540-546 https://doi.org/10.1006/bbrc.1995.1847
  15. Matsushita, K., H. Toyama, and O. Adashi. 1994. Respiratory chains and bioenergetics of acetic acid bacteria. Adv. Microbiol. Physiol. 36: 247-301 https://doi.org/10.1016/S0065-2911(08)60181-2
  16. Neumann, G., Y. Veeranagouda, T. B Karegoudar, O. Sahin, I. Mausezahl, N. Kabelitz, U. Kappelmeyer, and H. J. Heipieper. 2005. Cells of Pseudomonas and Enterobacter sp. adapt to the presence of toxic organic compounds by increasing their cell size. Extremophiles 9: 63-68
  17. Ramos, J. L., M. T. Gallegos, S. Marques, M. I. Ramos- Gonzalez, M. Espinosa-Urgel, and A. Segura. 2001. Responses of Gram-negative bacteria to certain environmental stresses. Curr. Opin. Microbiol. 4: 166-171 https://doi.org/10.1016/S1369-5274(00)00183-1
  18. Shevchenko, A., M. Wilm, O. Vorm, and M. Mann. 1996. Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal. Chem. 68: 850-858 https://doi.org/10.1021/ac950914h
  19. Shim, E. J., J. Sang-hoon, and K. Kwang-Hoon. 2003. Overexpression, purification, and biochemical characterization of the thermostable NAD-dependent alcohol dehydrogenase from Bacillus stearothermophilus. J. Microbiol. Biotechnol. 13: 738- 744
  20. Sikkema, J., B. J. De Bont, and B. Poolman. 1995. Mechanisms of membrane toxicity of hydrocarbons. Microbiol. Rev. 59: 201- 222
  21. Singer, M. E. and W. R. Finnerty. 1985. Alcohol dehydrogenase in Acinetobacter sp. strain H01-N: Role in hexadecane and hexadecanol metabolism. J. Bacteriol. 164: 1017-1024
  22. Toyama, H. A., K. Fujii, E. Matsushita, M. Shinagawa, and A. O. Ameyama. 1995. Three distinct quinoprotein alcohol dehydrogenases are expressed when Pseudomonas putida is grown on different alcohols. J. Bacteriol. 177: 2442-2450 https://doi.org/10.1128/jb.177.9.2442-2450.1995
  23. Veeranagouda, Y., T. B. Karegoudar, G. Neumann, and H. J. Heipieper. 2006. Enterobacter sp. VKGH12 growing with nbutanol as sole carbon source and cells to which the alcohol is added as pure toxin show great differences in their adaptive responses. FEMS Microbiol. Lett. 254: 48-54 https://doi.org/10.1111/j.1574-6968.2005.00017.x
  24. Veeranagouda, Y., M. H. Vijaykumar, P. K. Neelakanteshwar, S. N. Anand, and T. B. Karegoudar. 2006. Degradation of 1-butanol by solvent tolerant Enterobacter sp. VKGH12. Int. Biodeterior. Biodegradation 57: 186-189 https://doi.org/10.1016/j.ibiod.2006.01.005