Parasites, Hosts and Diseases

  • 제45권3호
  • /
  • Pages.181-190
  • /
  • 2007
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  • 2982-5164(pISSN)
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  • 1738-0006(eISSN)
대한기생충학·열대의학회 (The Korea Society for Parasitology and Tropical Medicine)
권호 표지

Molecular phylogeny of parasitic Platyhelminthes based on sequences of partial 28S rDNA D1 and mitochondrial cytochrome c oxidase subunit I

  • Lee, Soo-Ung (Department of Environmental and Tropical Medicine, School of Medicine, KonKuk University) ;
  • Chun, Ha-Chung (Department of Radiation Oncology, College of Medicine, Hanyang University) ;
  • Huh, Sun (Department of Parasitology, College of Medicine, Hallym University)
  • 발행 : 2007.09.30
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초록

The phylogenie relationships existing among 14 parasitic Platyhelminthes in the Republic of Korea were investigated via the use of the partial 28S ribosomal DNA (rDNA) D1 region and the partial mitochondrial cytochrome c oxidase subunit 1 (mCOI) DNA sequences. The nucleotide sequences were analyzed by length, G + C %, nucleotide differences and gaps in order to determine the analyzed phylogenie relationships. The phylogenie patterns of the 28S rDNA D1 and mCOI regions were closely related within the same class and order as analyzed by the PAUP 4.0 program, with the exception of a few species. These findings indicate that the 28S rDNA gene sequence is more highly conserved than are the mCOI gene sequences. The 28S rDNA gene may prove useful in studies of the systematics and population genetic structures of parasitic Platyhelminthes.

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참고문헌

  1. Benasson D, Zhang DX, Hartl DL and Hewitt GM (2001) Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends Ecol Evol 16: 314-321 https://doi.org/10.1016/S0169-5347(01)02151-6
  2. Blaxter ML, De Ley P, Garey JR, Liu LX, Scheldeman P, Vierstraete JR, Vanfleteren JR, Mackey LY, Dorris M, Frisse LM, Vida JT, Thomas WK (1998) A molecular evolutionary framework for the phylum Nematoda. Nature 392: 71-75 https://doi.org/10.1038/32160
  3. Bowles J, McManus DP (1994) Genetic characterization of the Asian Taenia, a newly described taeniid cestode of humans. Am J Trop Med Hyg 50: 33-44 https://doi.org/10.4269/ajtmh.1994.50.33
  4. Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucl Acids Res 16: 10881-10890 https://doi.org/10.1093/nar/16.22.10881
  5. Cribb TH, Bray RA, Littlewood DTJ, Pichelin SP, Herniou, EA (2001) The Digenea. In Interrelationships of the Platyhelminthes, Littlewood DTJ and Bray RA (eds.), Taylor and Francis, London, UK
  6. Gasser RB, Zhu X, McManus DP (1999) NADH dehydrogenase subunit 1 and cytochrome c oxidase subunit I sequences compared for members of the genus Taenia (Cestoda). Int J Parasitol 29: 1965-1970 https://doi.org/10.1016/S0020-7519(99)00153-8
  7. Halanych KM (2004) The new view of animal phylogeny. Ann Rev Ecol Evol Syst 35: 229-256 https://doi.org/10.1146/annurev.ecolsys.35.112202.130124
  8. Hoberg EP, Brooks DR, Mariaux J (1999) Phylogeny of the orders of the eucestoda: morphological and molecular evidence. Syst Parasitol 42: 12-37
  9. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120 https://doi.org/10.1007/BF01731581
  10. Lee SU, Huh S (2004) Variation of nuclear and mitochondrial DNAs in Korean and Chinese isolates of Clonorchis sinensis. Korean J Parasitol 42: 145-148 https://doi.org/10.3347/kjp.2004.42.3.145
  11. Lee SU, Huh S, Sohn WM (2004a) Molecular phylogenic location of the Plagiorchis muris (Digenea, Plagiorchiidae) based on sequences of partial 28S rDNA and mitochondrial cytochrome c oxidase subunit I. Korean J Parasitol 42: 71-75 https://doi.org/10.3347/kjp.2004.42.2.71
  12. Lee SU, Huh S, Sohn WM, Chai JY (2004b) Sequence comparisons of 28S ribosomal DNA and mitochondrial cytochrome c oxidase subunit I of Metagonimus yokogawai, M. takahashii and M. miyatai. Korean J Parasitol 42: 129-135 https://doi.org/10.3347/kjp.2004.42.3.129
  13. Littlewood DTJ and Bray RA (2001) Interrelationships of the Platyhelminthes. Taylor and Francis, London, UK
  14. Lockyer AE, Olson PD, Littlewood DTJ (2003) Utility of complete large and small subunit rRNA genes in resolving the phylogeny of the Neodermata (Platyhelminthes): implications and a review of the cercomer theory. Biol J Linn Soc 78: 155-171 https://doi.org/10.1046/j.1095-8312.2003.00141.x
  15. Morgan JAT and Blair D (1998) Relative merits of nuclear ribosomal internal transcribed spacer and mitochondrial COI and ND1 genes for distinguishing among Echinostoma species (Trematoda). Parasitology 116: 289- 297 https://doi.org/10.1017/S0031182097002217
  16. Olson PD, Cribb TH, Tkach VV, Bray RA and Littlewood DTJ (2003) Phylogeny and classification of the digenea (Platyhelminthes: Trematoda). Int J Parasitol 33: 733-755 https://doi.org/10.1016/S0020-7519(03)00049-3
  17. Olson PD, Littlewood DT, Bay RA, Mariaux J (2001) Interrelationships and evolution of the tapeworms (Platyhelminthes: Cestoda). Mol Phylogenet Evol 19: 443- 467 https://doi.org/10.1006/mpev.2001.0930
  18. Saitou N, Nei M (1987) The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
  19. Sambrook J, Russell DW (2002) Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, New York, USA
  20. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467
  21. Swofford DL (2001) Phylogenetic analysis using parsimony ($^{\ast}$ and other methods). Version 4. Sunderland, MA: Sinauer
  22. Tkach VV, Pawlowski J, Swiderski Z (2001) Molecular phylogeny of the suborder Plagiorchiata and its position in the system of Digenea. In Interrelationships of Platyhelminthes, Littlewood DTJ and Bray RA (eds.), Taylor and Francis, London, UK
  23. Tatusova TA, Madden TL (1999) BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 177: 187-188
  24. Vilas R, Criscione CD, Blouin MS (2005) A comparison between mitochondrial DNA and the ribosomal internal transcribed regions in prospecting for cryptic species of platyhelminth parasites. Parasitology 131: 839-846 https://doi.org/10.1017/S0031182005008437
  25. Yu JR, Chung JS, Huh S, Lee SH, Chai JY (1997) PCR-RFLP pattern of three kinds of Metagonimus in Korea. Korean J Parasitol 35: 271-276 https://doi.org/10.3347/kjp.1997.35.4.271