Methylation Pattern of H19 Gene at Various Preimplantation Development Stages of In Vitro Fertilized and Cloned Porcine Embryos

  • Im, Young-Bin (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Han, Dong-Wook (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Gupta, Mukesh Kumar (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Uhm, Sang-Jun (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Heo, Young-Tae (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Kim, Jin-Hoi (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Park, Chan-Kyu (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University) ;
  • Lee, Hoon-Taek (Department of Animal Biotechnology, Bio-Organ Research Center/Institute of Biomedical Science and Technology, Konkuk University)
  • Published : 2007.06.30

Abstract

Insulin-like growth factor II (IGF2) and H19 genes are mutually imprinted genes which may be responsible for abnormalities in the cloned fetuses and offspring. This study was performed to identify putative differentially methylated regions (DMRs) of porcine H19 locus and to explore its genomic imprinting in in vitro fertilized (IVF) and somatic cell nuclear transferred (SCNT) embryos. Based on mice genomic data, we identified DMRs on H19 and found porcine H19 DMRs that included three CTCF binding sites. Methylation patterns in IVF and SCNT embryos at the 2-, 4-, $8{\sim}16$-cells and blastocyst stages were analyzed by BS (Bisulfite Sequencing)-PCR. The CpGs in CTCF1 was significantly unmethylated in the 2-cell stage IVF embryos. However, the 4- (29.1%) and $8{\sim}16$-cell (68.2%) and blastocyst (48.2%) stages showed higher methylation levels (p<0.01). On the other hand, SCNT embryos were unmethylayted ($0{\sim}2%$) at all stages of development. The CpGs in CTCF2 showed almost unmethylation levels at the 2-,4- and $8{\sim}16$-cell and blastocyst stages of development in both IVF ($0{\sim}14.1%$) and SCNT ($0{\sim}6.4%$) embryos. At all stages of development, CTCF3 was unmethylated in IVF ($0{\sim}17.3%$) and SCNT ($0{\sim}1.2%$) embryos except at the blastocyst stage (54.5%) of IVF embryos. In conclusion, porcine SCNT embryos showed an aberrant methylation pattern comprised to IVF embryos. Therefore, we suggest that the aberrant methylation pattern of H19 loci may be a reason for increased abnormal fetus after embryo transfer of porcine SCNT embryos.

Keywords

References

  1. Bell AC, Felsenfeld G (2000): Methylation of a CTCF-dependent boundary controls imprinted expression of the IGF2 gene. Nature 405:482-485 https://doi.org/10.1038/35013100
  2. Boiani M, Eckardt S, Scholer HR, McLaughlin KJ (2002): Oct4 distribution and level in mouse clones: consequences for pluripotency. Genes Dev 16:1209-1219 https://doi.org/10.1101/gad.966002
  3. Dean W, Bowden L, Aitchison A, Klose J, Moore T, Meneses JJ (1998): Altered imprinted gene methylation and expression in completely ES cell-derived mouse fetuses: association with aberrant phenotypes. Development 125:2273-2282
  4. Dean, W, Santos F, Stojkovic M, Zakhartchenko V, Walter J, Wolf E, Reik W (2001): Conservation of methylation reprogramming in mammalian development: Aberrant reprogramming in cloned embryos. Proc Natl Acad Sci USA 98:13734-13738
  5. Ferguson-Smith AC, Surani MA (2001): Imprinting and the epigenetic asymmetry between parental genomes. Science 293:1086-1089 https://doi.org/10.1126/science.1064020
  6. Gardiner-Garden M, Frommer M (1987): CpG islands in vertebrate genomes. J Mol Biol 196:261- 282 https://doi.org/10.1016/0022-2836(87)90689-9
  7. Gupta MK, Uhm SJ, Lee HT (2007): Differential but beneficial effect of phytohemagglutinin on efficiency of in vitro porcine embryo production by so matic cell nuclear transfer or in vitro fertilization. Mol Reprod Dev May 1 [Epub ahead of print]
  8. Han DW, Song SJ, Uhm SJ, Do JT, Kim NH, Chung KS, Lee HT (2003a): Expression of IGF2 and IGF receptor mRNA in bovine nuclear transferred embryos. Zygote 11:245-252 https://doi.org/10.1017/S0967199403002296
  9. Han YM, Kang YK, Koo DB, Lee KK (2003b): Nuclear reprogramming of cloned embryos produced in vitro. Theriogenology 59:33-44 https://doi.org/10.1016/S0093-691X(02)01271-2
  10. Hark AT, Schroenherr CJ, Katz DJ, Ingram RS, Levorse JM, Tilghman SM (2000): CTCF mediates methylation-sensitive enhancer blocking activity at the H19/IGF2 locus. Nature 405:486-489 https://doi.org/10.1038/35013106
  11. Howlett SK, Reik W (1991): Methylation levels of maternal and paternal genomes during preimplantation development. Development 113:119-127
  12. Humpherys D, Eggan K, Akutsu H, Hochedlinger K, Rideout WM, Biniszkiewitz D (2001): Epigenetic instability in ES cells and cloned mice. Science 293: 95-97 https://doi.org/10.1126/science.1061402
  13. Ishihara K, Sasaki H (2002): An evolutionarily conserved putative insulator element near the 3' boundary of the imprinted IGF2/H19 domain. Hum Mol Genet 11:1627-1636 https://doi.org/10.1093/hmg/11.14.1627
  14. Kanduri CV, Pant V, Loukinov D, Pugacheva E, Qi CF, Wolffe A, Ohlsson R, Lobanenkov VV (2000): Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive. Curr Biol 10:853-856 https://doi.org/10.1016/S0960-9822(00)00597-2
  15. Kang YK, Koo DB, Park JS, Choi YH, Chung AS, Lee KK, Han YM (2001a): Aberrant methylation of donor genome in cloned bovine embryos. Nat Genet 28:173-177 https://doi.org/10.1038/88903
  16. Kang YK, Koo DB, Park JS, Choi YH, Lee KK, Han YM (2001b): Influence of the oocyte nuclei on demethylation of genome in cloned bovine embryos. FEBS Lett 499:55-58 https://doi.org/10.1016/S0014-5793(01)02514-5
  17. Kang YK, Koo DB, Park JS, Choi YH, Kim HN, Chang WK, Lee KK, Han YM (2001c): Typical demethylation events in cloned pig embryos. J Biol Chem 276:39980-39984 https://doi.org/10.1074/jbc.M106516200
  18. Kang YK, Park JS, Koo DB, Choi YH, Kim SU, Lee KK, Han YM (2002). Limited demethylation leaves mosaic-typemethylation states in cloned bovine preimplantation embryos. EMBO J 21:1092-1100 https://doi.org/10.1093/emboj/21.5.1092
  19. Kang YK, Yeo SE, Kim SH, Koo DB, Park JS, Wee GI, Han JS, Oh KB, Lee KK, Han YM (2003): Precise recapitulation of methylation change in early cloned embryos. Mol Reprod Dev 66:32-37 https://doi.org/10.1002/mrd.10330
  20. Kato Y, Tani T, Sotomaru Y, Kurokawa K, Kato J, Doguchi H, Yasue H, Tsunoda Y (1998): Eight calves cloned from somatic cells of a single adult. Science 282:2095-2098 https://doi.org/10.1126/science.282.5396.2095
  21. Li E, Beard C, Jaenisch R (1993): Role for DNA methylation in genomic imprinting. Nature 366:362-365 https://doi.org/10.1038/366362a0
  22. Li L, Keverne EB, Aparicio SA, Ishino F, Barton SC, Surani MA (1999): Regulation of maternal behavior and offspring growth by paternally expressed Peg3. Science 284:330-333 https://doi.org/10.1126/science.284.5412.330
  23. Mann MR, Chung YG, Nolen LD, Verona RI, Latham KE, Bartolomei MS (2003): Disruption of imprinted gene methylation and expression in cloned preimplantation stage mouse embryos. Biol Reprod 69:902-914 https://doi.org/10.1095/biolreprod.103.017293
  24. Onishi A, Iwamoto M, Akita T, Mikawa S, Takeda K, Awata T, Hanada H, Perry AC (2000): Pig cloning by microinjection of fetal fibroblast nuclei. Science 289:1188-1190 https://doi.org/10.1126/science.289.5482.1188
  25. Oswald J, Engemann S, Lane N, Mayer W, Olek A, Fundele R, Dean W, Reik W, Walter J (2000): Active demethylation of the paternal genome in the mouse zygote. Curr Biol 10:475-478 https://doi.org/10.1016/S0960-9822(00)00448-6
  26. Park CY, Uhm SJ, Song SJ, Kim KS, Hong SB, Chung KS, Park C, Lee HT (2005). Increase of ICSI efficiency with hyaluronic acid binding sperm for low aneuploidy frequency in pig. Theriogenology 64:1158-1169 https://doi.org/10.1016/j.theriogenology.2005.01.010
  27. Reik W, Walter J (2001): Genomic imprinting: parental influence on the genome. Nat Rev Genet 2: 21-32
  28. Rideout WM, Eggan K, Jaenisch R (2001): Nuclear cloning and epigenetic reprogramming of the genome. Science 293:1093-1098 https://doi.org/10.1126/science.1063206
  29. Szabo P, Tang SH, Rentsendorj A, Pfeifer GP, Mann JR (2000): Maternal-specific footprints at putative CTCF sites in the H19 imprinting control region give evidence for insulator function. Curr Biol 10: 607-610 https://doi.org/10.1016/S0960-9822(00)00489-9
  30. Takai D, Gonzales FA, Tsai YC, Thayer MJ, Jones PA (2001): Large scale mapping of methylcytosines in CTCF-binding sites in the human H19 promoter and aberrant hypomethylation in human bladder cancer. Hum Mol Genet 10:2619-2626 https://doi.org/10.1093/hmg/10.23.2619
  31. Thorvaldsen JL, Duran KL, Bartolomei MS (1998): Deletion of the H19 differentially methylated domain results in loss of imprinted expression of H19 and IGF2. Genes Dev 12:3693-3702 https://doi.org/10.1101/gad.12.23.3693
  32. Uhm SJ, Chung HM, Kim C, Shim H, Kim NH, Lee HT, Chung KS (2000): In vitro development of porcine enucleated oocytes reconstructed by the transfer of porcine fetal fibroblasts and cumulus cells. Theriogenology 54:559-570 https://doi.org/10.1016/S0093-691X(00)00371-X
  33. Wakayama T, Perry ACF, Zuccotti M, Johnson KR, Yanagimachi R (1998): Full-term development of mice from enucleated oocytes injected with cumulus cell nuclei. Nature 394:369-374 https://doi.org/10.1038/28615
  34. Warnecke PM, Mann JR, Frommer M, Clark SJ (1998): Bisulfite sequencing in preimplantation embryos: DNA methylation profile of the upstream region of the mouse imprinted H19 gene. Geno mics 51:182-190 https://doi.org/10.1006/geno.1998.5371
  35. Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH (1997): Viable offspring derived from fetal and adult mammalian cells. Nature 385:810-813 https://doi.org/10.1038/385810a0